Publications

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Book Chapter
J. F. Wendel, Brubaker, C., Álvarez, I., Cronn, R., and Stewart, J. McD., Evolution and natural history of the cotton genus, in Genetics and genomics of cotton, Springer US, 2009, pp. 3-22.
N. F. Weeden and Wendel, J. F., Genetics of plant isozymes, in Isozymes in plant biology, Springer Netherlands, 1989, pp. 46-72.
J. F. Wendel, Genome evolution in polyploids, in Plant molecular evolution, Springer Netherlands, 2000, pp. 225-249.
J. F. Wendel, Flagel, L. E., and Adams, K. L., Jeans, genes, and genomes: cotton as a model for studying polyploidy, in Polyploidy and genome evolution, Springer Berlin Heidelberg, 2012, pp. 181-207.
R. Whitkus, Doebley, J., and Wendel, J. F., Nuclear DNA markers in systematics and evolution, in DNA-based markers in plants, Springer Netherlands, 1994, pp. 116-141.
J. F. Wendel, Brubaker, C. L., and Seelanan, T., The origin and evolution of Gossypium, in Physiology of cotton, Springer Netherlands, 2010, pp. 1-18.
J. F. Wendel and Doyle, J. J., Phylogenetic incongruence: window into genome history and molecular evolution, in Molecular systematics of plants II, Springer US, 1998, pp. 265-296.
M. L. Ainouche and Wendel, J. F., Polyploid speciation and genome evolution: Lessons from recent allopolyploids, in Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life, Springer International Publishing, 2014, pp. 87-113.
K. L. Adams, Flagel, L., and Wendel, J. F., Responses of the cotton genome to polyploidy, in Genetics and Genomics of Cotton, Springer US, 2009, pp. 419-429.
Conference Proceedings
M. D. Edwards, Stuber, C. W., and Wendel, J. F., THE GENETIC-BASIS OF QUANTITATIVE TRAITS-EVIDENCE FROM AN EXPERIMENTAL MAIZE POPULATION, AMERICAN JOURNAL OF BOTANY, vol. 72, no. 6. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 875-876, 1985.
M. L. Ainouche and Wendel, J. F., Genome technologies, polyploidy and evolution, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
J. F. Wendel, Jeans, Genes, and The Independent Domestications Of Cotton, Plant and Animal Genome XXI Conference. Plant and Animal Genome, 2013.
J. F. Wendel, Edwards, M. D., and Stuber, C. W., MULTILOCUS GENETIC-CONTROL OF PREFERENTIAL FERTILIZATION IN ZEA-MAYS-L, AMERICAN JOURNAL OF BOTANY, vol. 74, no. 5. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 671-671, 1987.
J. F. Wendel, Edwards, M. D., and Stuber, C. W., SOME GENETIC CONSEQUENCES OF REUNITING 2 RACIALLY DIVERGENT POPULATIONS OF ZEA-MAYS-L, AMERICAN JOURNAL OF BOTANY, vol. 72, no. 6. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 879-879, 1985.
C. R. Parks, Wendel, J. F., Sewell, M. M., and He, S. - A., STUDIES OF GENETIC-DIVERGENCE IN THE GENUS LIRIODENDRON (MAGNOLIACEAE), AMERICAN JOURNAL OF BOTANY, vol. 73, no. 5. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 686-687, 1986.
Journal Article
C. I. Castillo-Davis, Miller, D. J., Ball, E. E., Technau, U., Adams, K. L., Wendel, J. F., Neeman, Y., Dahary, D., Levanon, E. Y., and Sorek, R., 553 Multievidence microarray mining, Genetics, vol. 21, no. 10, pp. 533-582, 2005.
J. F. Wendel and Doyle, J., 7 Polyploidy and evolution in plants, Plant diversity and evolution: genotypic and phenotypic variation in higher plants, p. 97, 2005.
K. L. Adams and Wendel, J. F., Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids, Genetics, vol. 171, no. 4, pp. 2139-2142, 2005.
J. F. Wendel and Percy, R. G., Allozyme diversity and introgression in the Galapagos Islands endemic Gossypium darwinii and its relationship to continental G. barbadense, Biochemical Systematics and Ecology, vol. 18, no. 7, pp. 517-528, 1990.
R. G. Percy and Wendel, J. F., Allozyme evidence for the origin and diversification of Gossypium barbadense L., Theoretical and Applied Genetics, vol. 79, no. 4, pp. 529-542, 1990.
R. Cronn, Brothers, M., Klier, K., Bretting, P. K., and Wendel, J. F., Allozyme variation in domesticated annual sunflower and its wild relatives, Theoretical and applied genetics, vol. 95, no. 4, pp. 532-545, 1997.
S. Renny-Byfield, Gallagher, J. P., Grover, C. E., Szadkowski, E., Page, J. T., Udall, J. A., Wang, X., Paterson, A. H., and Wendel, J. F., Ancient gene duplicates in Gossypium (Cotton) exhibit near-complete expression divergence, Genome biology and evolution, vol. 6, no. 3, pp. 559-571, 2014.
J. F. Wendel and Parks, C. R., Application of electrophoresis to taxonomic and breeding problems in Camellias, Camellia J, vol. 34, no. 4, pp. 39-41, 1979.
J. F. Doebley and Wendel, J. F., Application of RFLPs to plant systematics, Development and application of molecular markers to problems in plant genetics. New York, USA Cold Spring Harbor Laboratories, pp. 57-67, 1989.
C. E. Grover, Grupp, K. K., Wanzek, R. J., and Wendel, J. F., Assessing the monophyly of polyploid Gossypium species, Plant systematics and evolution, vol. 298, no. 6, pp. 1177-1183, 2012.
W. Zhang, Wendel, J. F., and Clark, L. G., Bamboozled again! Inadvertent isolation of fungal rDNA sequences from bamboos (Poaceae: Bambusoideae), Molecular phylogenetics and evolution, vol. 8, no. 2, pp. 205-217, 1997.
C. L. Brubaker, Koontz, J. A., and Wendel, J. F., Bidirectional cytoplasmic and nuclear introgression in the New World cottons, Gossypium barbadense and G. hirsutum (Malvaceae), American Journal of Botany, pp. 1203-1208, 1993.
J. F. Wendel, Schnabel, A., and Seelanan, T., Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium), Proceedings of the National Academy of Sciences, vol. 92, no. 1, pp. 280-284, 1995.
D. A. Baum, Small, R. L., and Wendel, J. F., Biogeography and floral evolution of Baobabs Adansonia, Bombacaceae as inferred from multiple data sets, Systematic Biology, vol. 47, no. 2, pp. 181-207, 1998.
K. M. Olsen and Wendel, J. F., A bountiful harvest: genomic insights into crop domestication phenotypes, Annual Review of Plant Biology, vol. 64, pp. 47-70, 2013.
C. E. Grover, Gallagher, J. P., and Wendel, J. F., Candidate Gene Identification of Flowering Time Genes in Cotton, The Plant Genome, 2015.
R. E. Masonbrink, Gallagher, J. P., Jareczek, J. J., Renny-Byfield, S., Grover, C. E., Gong, L., and Wendel, J. F., CenH3 evolution in diploids and polyploids of three angiosperm genera, BMC plant biology, vol. 14, no. 1, p. 383, 2014.
A. Schnabel and Wendel, J. F., Cladistic biogeography of Gleditsia (Leguminosae) based on ndhF and rpl16 chloroplast gene sequences, American Journal of Botany, vol. 85, no. 12, pp. 1753-1765, 1998.
L. Gong, Masonbrink, R. E., Grover, C. E., Renny-Byfield, S., and Wendel, J. F., A Cluster of Recently Inserted Transposable Elements Associated with siRNAs in, The Plant Genome, 2015.
W. L. Applequist, Cronn, R., and Wendel, J. F., Comparative development of fiber in wild and cultivated cotton, Evolution & development, vol. 3, no. 1, pp. 3-17, 2001.
M. - J. Yoo and Wendel, J. F., Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome, 2014.
C. L. Brubaker, Paterson, A. H., and Wendel, J. F., Comparative genetic mapping of allotetraploid cotton and its diploid progenitors, Genome, vol. 42, no. 2, pp. 184-203, 1999.
B. S. Gaut, Clark, L. G., Wendel, J. F., and Muse, S. V., Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae)., Molecular Biology and Evolution, vol. 14, no. 7, pp. 769-777, 1997.
L. Gong, Kakrana, A., Arikit, S., Meyers, B. C., and Wendel, J. F., Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species, Genome biology and evolution, vol. 5, no. 12, pp. 2449-2459, 2013.
T. Seelanan, Schnabel, A., and Wendel, J. F., Congruence and consensus in the cotton tribe (Malvaceae), Systematic Botany, pp. 259-290, 1997.
D. J. Crawford, Doyle, J. J., Soltis, D. E., Soltis, P. S., and Wendel, J. F., Contemporary and future studies in plant speciation, 2014.
D. J. Crawford, Doyle, J. J., Soltis, D. E., Soltis, P. S., and Wendel, J. F., Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology, Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 369, no. 1648, p. 20130341, 2014.
L. E. Flagel, Chen, L., Chaudhary, B., and Wendel, J. F., Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton, Journal of heredity, p. esp003, 2009.
P. L. VanderWiel, Voytas, D. F., and Wendel, J. F., Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.), Journal of molecular evolution, vol. 36, no. 5, pp. 429-447, 1993.
R. L. Small and Wendel, J. F., Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium), Genetics, vol. 155, no. 4, pp. 1913-1926, 2000.
K. M. Olsen and Wendel, J. F., Crop plants as models for understanding plant adaptation and diversification, Frontiers in plant science, vol. 4, 2013.
I. Álvarez and Wendel, J. F., Cryptic interspecific introgression and genetic differentiation within Gossypium aridum (Malvaceae) and its relatives, Evolution, vol. 60, no. 3, pp. 505-517, 2006.
R. Cronn, Small, R. L., Haselkorn, T., and Wendel, J. F., Cryptic repeated genomic recombination during speciation in Gossypium gossypioides, Evolution, vol. 57, no. 11, pp. 2475-2489, 2003.

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