Publications

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2020
Z. Chen, Zhao, J., Qiao, J., Li, W., Li, J., Xu, R., Wang, H., Liu, Z., Xing, B., and Wendel, J. F., “Comparative analysis of codon usage between Gossypium hirsutum and G. barbadense mitochondrial genomes”, Mitochondrial DNA Part B, vol. 5, no. 3, pp. 2500-2506, 2020.
S. Kumar Mishra, Muthye, V., and Kandoi, G., “Computational Methods for Predicting Functions at The mRNA Isoform Level”, 2020.
J. P. Gallagher, Grover, C. E., Hu, G., Jareczek, J. J., and Wendel, J. F., “Conservation and Divergence in Duplicated Fiber Coexpression Networks Accompanying Domestication of the Polyploid Gossypium hirsutum L.”, G3: Genes, Genomes, Genetics, 2020.
B. Bond‐Lamberty, Christianson, D. S., Malhotra, A., Pennington, S. C., Sihi, D., AghaKouchak, A., Anjileli, H., M Arain, A., Armesto, J. J., and Ashraf, S., “COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data”, Global change biology, 2020.
2019
L. Hu, Xu, Z., Wang, M., Fan, R., Yuan, D., Wu, B., Wu, H., Qin, X., Yan, L., and Tan, L., “The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis”, Nature Communications, vol. 10, no. 1, pp. 1-11, 2019.
R. A. Y. S. ANDRADE, PIANISSOLA, E. V. A. N. D. R. O. M., VIDAL, K. A. I. O. V. I. N. I. C. I. U. S. D., DA MOTA, A. L. I. N. E. C. O. S. T. A., Clark, L. G., and OLIVEIRA, R. E. Y. J. A. N. E. P., “Chusquea parviligulata (Poaceae: Bambusoideae: Bambuseae): a new species of C. subg. Chusquea endemic to the Atlantic rainforest of Bahia, Brazil”, Phytotaxa, vol. 405, no. 1, pp. 27-36, 2019.
C. R. I. S. T. I. E. L. L. E. DE JESUS-COSTA, VIANA, P. E. D. R. O. L., Clark, L. G., and SANTOS-GONÇALVES, A. N. A. P. A. U. L. A., “Colanthelia longipetiolata (Poaceae: Bambusoideae), a new species of woody bamboo from the Brazilian Atlantic forest”, Phytotaxa, vol. 401, no. 2, pp. 133-138, 2019.
T. D. Leandro, Scatena, V. L., and Clark, L. G., “Comparative leaf blade anatomy and micromorphology in the systematics and phylogeny of Bambusoideae (Poaceae: Poales)”, Botanical Journal of the Linnean Society, 2019.
C. N. Passow, Bronikowski, A. M., Blackmon, H., Parsai, S., Schwartz, T. S., and McGaugh, S. E., “Contrasting patterns of rapid molecular evolution within the p53 network across mammal and sauropsid lineages”, Genome Biology and Evolution, 2019.
L. G. Clark, Londoño, X., Tyrrell, C. D., and Judziewicz, E. J., “Convergence strikes again in the Neotropical woody bamboos (Poaceae: Bambusoideae: Bambuseae): a new Andean genus and a new species”, Botanical Journal of the Linnean Society, 2019.
M. B. Hufford, Mier y Teran, J. C. Berny, and Gepts, P., “Crop Biodiversity: An Unfinished Magnum Opus of Nature”, Annual Review of Plant Biology, vol. 70, pp. 727-751, 2019.
M. L. Silveira de Carvalho, de Jesus, I. S. D., da Silva, R. M., Leite, K. R. B., Schnadelbach, A. S., Clark, L. G., and R De Oliveira, P., “Cryptic speciation in the herbaceous bamboo genus Piresia (Poaceae, Olyreae)”, Botanical Journal of the Linnean Society, 2019.
2018
F. Manfredini, Brown, M. J. F., and Toth, A. L., “Candidate genes for cooperation and aggression in the social wasp Polistes dominula”, Journal of Comparative Physiology A, pp. 1-15, 2018.
V. Muthye and Lavrov, D. V., “Characterization of mitochondrial proteomes of nonbilaterian animals”, IUBMB life, 2018.
S. M. Rehan, Glastad, K. M., Steffen, M. A., Fay, C. R., Hunt, B. G., and Toth, A. L., “Conserved genes underlie phenotypic plasticity in an incipiently social bee”, Genome Biology and Evolution, 2018.
A. Marie Gawel, Rogers, H. S., Miller, R. H., and Kerr, A. M., “Contrasting ecological roles of non-native ungulates in a novel ecosystem”, Royal Society Open Science, vol. 5, no. 4, p. 170151, 2018.
C. Li, Sun, X., Conover, J. L., Zhang, Z., Wang, J., Wang, X., Deng, X., Wang, H., Liu, B., and Wendel, J. F., “Cytonuclear coevolution following homoploid hybrid speciation in Aegilops tauschii”, Molecular Biology and Evolution, 2018.
2017
S. Radhakrishnan and Valenzuela, N., “Chromosomal context affects the molecular evolution of sex-linked genes and their autosomal counterparts in turtles and other vertebrates”, Journal of Heredity, 2017.
L. Attigala, FUENTES, A. L. F. R. E. D. O. F., and Clark, L. G., “Chusquea sect. Tenellae (Bambuseae, Bambusoideae, Poaceae), a taxonomic revision of a new section from South America”, Phytotaxa, vol. 324, no. 3, pp. 239-265, 2017.
E. Ruiz‐Sanchez, Castro‐Castro, A., and Clark, L. G., “Chusquea septentrionalis sp. nov.(Poaceae: Bambusoideae) from the Madrean region in Durango, Mexico”, Nordic Journal of Botany, 2017.
A. D. Keiser and Bradford, M. A., “Climate masks decomposer influence in a cross-site litter decomposition study”, Soil Biology and Biochemistry, vol. 107, pp. 180-187, 2017.
A. J. Berens, Tibbetts, E. A., and Toth, A. L., “Cognitive specialization for learning faces is associated with shifts in the brain transcriptome of a social wasp”, Journal of Experimental Biology, vol. 220, no. 12, pp. 2149-2153, 2017.
2016
Z. Chen, Feng, K., Grover, C. E., Li, P., Liu, F., Wang, Y., Xu, Q., Shang, M., Zhou, Z., and Cai, X., “Chloroplast DNA Structural Variation, Phylogeny, and Age of Divergence among Diploid Cotton Species”, PloS one, vol. 11, no. 6, p. e0157183, 2016.
E. Chiel, Kuslitzky, W., Corcuera, P., Valverde, P. Luis, Jiménez, M. Luisa, Ponce-Mendoza, A., De la Rosa, G., Nieto, G., Graça, M. B., and Morais, J. W., “COMMUNITY AND ECOSYSTEM ECOLOGY Diversity and Abundance of House Fly Pupal Parasitoids in Israel, with First Records of Two Spalangia”, Environmental Entomology, vol. 45, no. 2, 2016.
M. B. Hufford, “Comparative genomics provides insight into maize adaptation in temperate regions”, Genome Biology, vol. 17, no. 1, p. 1, 2016.
D. C. Adams and Collyer, M. L., “On the comparison of the strength of morphological integration across morphometric datasets”, Evolution, 2016.
J. Derek Scasta, Duchardt, C., Engle, D. M., Miller, J. R., Debinski, D. M., and Harr, R. N., “Constraints to restoring fire and grazing ecological processes to optimize grassland vegetation structural diversity”, Ecological Engineering, vol. 95, pp. 865-875, 2016.
G. M. Janzen and Hufford, M. B., “Crop Domestication: A Sneak-Peek into the Midpoint of Maize Evolution”, Current Biology, vol. 26, no. 23, pp. R1240-R1242, 2016.
E. E. Montiel, Badenhorst, D., Lee, L. S., Literman, R., Trifonov, V., and Valenzuela, N., “Cytogenetic Insights into the Evolution of Chromosomes and Sex Determination Reveal Striking Homology of Turtle Sex Chromosomes to Amphibian Autosomes”, Cytogenetic and Genome Research, 2016.
2015
C. E. Grover, Gallagher, J. P., and Wendel, J. F., “Candidate Gene Identification of Flowering Time Genes in Cotton”, The Plant Genome, 2015.
A. J. Berens, Tibbetts, E. A., and Toth, A. L., “Candidate genes for individual recognition in Polistes fuscatus paper wasps”, Journal of Comparative Physiology A, pp. 1-15, 2015.
J. M. Jandt and Toth, A. L., “Chapter Three-Physiological and Genomic Mechanisms of Social Organization in Wasps (Family: Vespidae)”, Advances in Insect Physiology, vol. 48, pp. 95-130, 2015.
E. Ruiz-Sanchez, Mejía-Saulés, T., Cortés, G., and Clark, L. G., “Chusquea gibcooperi (Poaceae: Bambusoideae: Bambuseae: Chusqueinae), a new species endemic to Mexico”, Brittonia, pp. 1-6, 2015.
M. S. Strickland, Keiser, A. D., and Bradford, M. A., “Climate history shapes contemporary leaf litter decomposition”, Biogeochemistry, vol. 122, no. 2-3, pp. 165-174, 2015.
L. Gong, Masonbrink, R. E., Grover, C. E., Renny-Byfield, S., and Wendel, J. F., “A Cluster of Recently Inserted Transposable Elements Associated with siRNAs in”, The Plant Genome, 2015.
S. M. Thomas and Moloney, K. A., “Combining the effects of surrounding land-use and propagule pressure to predict the distribution of an invasive plant”, Biological Invasions, vol. 17, no. 1, pp. 477-495, 2015.
J. W. Leff, Jones, S. E., Prober, S. M., Barberán, A., Borer, E. T., Firn, J. L., W Harpole, S., Hobbie, S. E., Hofmockel, K. S., and Knops, J. M. H., “Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe”, Proceedings of the National Academy of Sciences, p. 201508382, 2015.
S. Hyberg, Iovanna, R., Crumpton, W., and Richmond, S., “The cost effectiveness of wetlands designed and sited for nitrate removal: The effect of increased efficiency, rising easement costs, and lower interest rates”, Journal of Soil and Water Conservation, vol. 70, no. 2, 2015.
2014
R. E. Masonbrink, Gallagher, J. P., Jareczek, J. J., Renny-Byfield, S., Grover, C. E., Gong, L., and Wendel, J. F., “CenH3 evolution in diploids and polyploids of three angiosperm genera”, BMC plant biology, vol. 14, no. 1, p. 383, 2014.
A. C. Kraemer, Serb, J. M., and Adams, D. C., “Coevolution of Coloration and Conspicuousness in a Batesian Mimic”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 54. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E114-E114, 2014.
M. - J. Yoo and Wendel, J. F., “Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome”, 2014.
D. Allen McGranahan, Daigh, A. L., Veenstra, J. J., Engle, D. M., Miller, J. R., and Debinski, D. M., “Connecting Soil Organic Carbon and Root Biomass with Land-Use and Vegetation in Temperate Grassland”, The Scientific World Journal, vol. 2014, 2014.
D. J. Crawford, Doyle, J. J., Soltis, D. E., Soltis, P. S., and Wendel, J. F., “Contemporary and future studies in plant speciation”, 2014.
D. J. Crawford, Doyle, J. J., Soltis, D. E., Soltis, P. S., and Wendel, J. F., “Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology”, Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 369, no. 1648, p. 20130341, 2014.
C. - M. Shan, Shangguan, X. - X., Zhao, B., Zhang, X. - F., Chao, L. -men, Yang, C. - Q., Wang, L. - J., Zhu, H. - Y., Da Zeng, Y. -, and Guo, W. - Z., “Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3”, Nature communications, vol. 5, 2014.
L. Gong, Olson, M., and Wendel, J. F., “Cytonuclear evolution of rubisco in four allopolyploid lineages”, Molecular biology and evolution, vol. 31, no. 10, pp. 2624-2636, 2014.
2013
D. M. Debinski, Caruthers, J., Cook, D., Crowley, J., and Wickham, H., “Coenonympha haydenii Responds to Drought”, Bulletin of the Ecological Society of America, vol. 94, no. 2, pp. 182-182, 2013.
Y. Huang, Martin, L. M., Isbell, F. I., and Wilsey, B. J., “Is community persistence related to diversity? A test with prairie species in a long-term experiment”, Basic and Applied Ecology, vol. 14, no. 3, pp. 199-207, 2013.
J. Deitloff, Petersen, J. D., and Adams, D. C., “Complex species interactions lead to unpredictable outcomes in Plethodon”, Herpetologica, vol. 69, no. 1, pp. 1-10, 2013.
L. Gong, Kakrana, A., Arikit, S., Meyers, B. C., and Wendel, J. F., “Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species”, Genome biology and evolution, vol. 5, no. 12, pp. 2449-2459, 2013.

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