Publications

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2020
M. G. Palacios, Gangloff, E. J., Reding, D. M., and Bronikowski, A. M., “Genetic background and thermal environment differentially influence the ontogeny of immune components during early life in an ectothermic vertebrate”, Journal of Animal Ecology, 2020.
J. - F. Cao, Huang, J. - Q., Liu, X., Huang, C. - C., Zheng, Z. - S., Zhang, X. - F., Shangguan, X. - X., Wang, L. - J., Zhang, Y. - G., and Wendel, J. F., “Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium”, BMC genomics, vol. 21, no. 1, pp. 1-16, 2020.
B. Wang, Lin, Z., Li, X., Zhao, Y., Zhao, B., Wu, G., Ma, X., Wang, H., Xie, Y., and Li, Q., “Genome-wide selection and genetic improvement during modern maize breeding”, Nature Genetics, pp. 1-7, 2020.
Y. Wu, Lin, F., Zhou, Y., Wang, J., Sun, S., Wang, B., Zhang, Z., Li, G., Lin, X., and Wang, X., “Genomic mosaicism due to homoeologous exchange generates extensive phenotypic diversity in nascent allopolyploids”, National Science Review, 2020.
G. Nieto Feliner, Casacuberta, J., and Wendel, J. F., “Genomics of evolutionary novelty in hybrids and polyploids”, Frontiers in Genetics, vol. 11, 2020.
A. Walton, Sheehan, M. J., and Toth, A. L., “Going wild for functional genomics: RNA interference as a tool to study gene-behavior associations in diverse species and ecological contexts”, Hormones and Behavior, vol. 124, p. 104774, 2020.
2019
B. L. Bodensteiner, Warner, D. A., Iverson, J. B., Milne‐Zelman, C. L., Mitchell, T. S., Refsnider, J. M., and Janzen, F. J., “Geographic variation in thermal sensitivity of early life traits in a widespread reptile”, Ecology and Evolution, 2019.
2017
M. Branstetter, Childers, A. K., Cox-Foster, D., Hopper, K. R., Kapheim, K. M., Toth, A. L., and Worley, K. C., “Genomes of the Hymenoptera”, Current Opinion in Insect Science, 2017.
P. Bilinski, Han, Y., Hufford, M. B., Lorant, A., Zhang, P., Estep, M. C., Jiang, J., and Ross-Ibarra, J., “Genomic abundance is not predictive of tandem repeat localization in grass genomes”, PloS one, vol. 12, no. 6, p. e0177896, 2017.
Z. Yu, Wang, J., Liu, S., Rentch, J. S., Sun, P., and Lu, C., “Global gross primary productivity and water use efficiency changes under drought stress”, Environmental Research Letters, vol. 12, no. 1, p. 014016, 2017.
B. Zhang, Tian, H., Lu, C., Dangal, S. R. S., Yang, J., and Pan, S., “Global manure nitrogen production and application in cropland during 1860–2014: a 5 arcmin gridded global dataset for Earth system modeling”, Earth System Science Data, vol. 9, no. 2, pp. 667-678, 2017.
C. Lu and Tian, H., “Global nitrogen and phosphorus fertilizer use for agriculture production in the past half century: shifted hot spots and nutrient imbalance”, Earth System Science Data, vol. 9, no. 1, p. 181, 2017.
2015
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., “Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective”, Genetics, vol. 200, no. 1, pp. 91-104, 2015.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., “Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective”, Genetics, 2015.
J. McD. Stewart, Craven, L. A., Brubaker, C., and Wendel, J. F., “Gossypium anapoides (Malvaceae), a new species from Western Australia”, Novon, vol. 23, no. 4, pp. 447-451, 2015.
2014
D. C. Adams, “A generalized K statistic for estimating phylogenetic signal from shape and other high-dimensional multivariate data”, Systematic biology, vol. 63, no. 5, pp. 685-697, 2014.
M. Yoon Chung, Nason, J. D., Lopez-Pujol, J., Yamashiro, T., Yang, B. - Y., Luo, Y. - B., and Chung, M. Gi, “Genetic consequences of fragmentation on populations of the terrestrial orchid Cymbidium goeringii”, Biological Conservation, vol. 170, pp. 222-231, 2014.
C. Xu, Bai, Y., Lin, X., Zhao, N., Hu, L., Gong, Z., Wendel, J. F., and Liu, B., “Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies”, Molecular biology and evolution, vol. 31, no. 5, pp. 1066-1076, 2014.
2013
A. Madlung and Wendel, J. F., “Genetic and epigenetic aspects of polyploid evolution in plants”, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
J. Greilhuber and Leitch, I. J., “Genome size and the phenotype”, in Plant Genome Diversity Volume 2, Springer Vienna, 2013, pp. 323-344.
D. C. Adams and OTÁROLA‐CASTILLO, E. R. I. K., “geomorph: an R package for the collection and analysis of geometric morphometric shape data”, Methods in Ecology and Evolution, vol. 4, no. 4, pp. 393-399, 2013.
D. M. Debinski, Caruthers, J. C., Cook, D., Crowley, J., and Wickham, H., “Gradient-based habitat affinities predict species vulnerability to drought”, Ecology, vol. 94, no. 5, pp. 1036-1045, 2013.
2012
D. Allen McGranahan, Engle, D. M., Wilsey, B. J., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., “Grazing and an invasive grass confound spatial pattern of exotic and native grassland plant species richness”, Basic and Applied Ecology, vol. 13, no. 8, pp. 654-662, 2012.
2011
G. Hu, Houston, N. L., Pathak, D., Schmidt, L., Thelen, J. J., and Wendel, J. F., “Genomically biased accumulation of seed storage proteins in allopolyploid cotton”, Genetics, vol. 189, no. 3, pp. 1103-1115, 2011.
2010
P. Piras, Colangelo, P., Adams, D. C., Buscalioni, A., Cubo, J., Kotsakis, T., Meloro, C., and Raia, P., “The Gavialis–Tomistoma debate: the contribution of skull ontogenetic allometry and growth trajectories to the study of crocodylian relationships”, Evolution & development, vol. 12, no. 6, pp. 568-579, 2010.
A. S. Rivera, M Pankey, S., Plachetzki, D. C., Villacorta, C., Syme, A. E., Serb, J. M., Omilian, A. R., and Oakley, T. H., “Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach”, BMC evolutionary biology, vol. 10, no. 1, p. 123, 2010.
R. A. Rapp, Haigler, C. H., Flagel, L., Hovav, R. H., Udall, J. A., and Wendel, J. F., “Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication”, BMC biology, vol. 8, no. 1, p. 139, 2010.
2009
L. E. Flagel and Wendel, J. F., “Gene duplication and evolutionary novelty in plants”, New Phytologist, vol. 183, no. 3, pp. 557-564, 2009.
D. C. Adams and Collyer, M. L., “A general framework for the analysis of phenotypic trajectories in evolutionary studies”, Evolution, vol. 63, no. 5, pp. 1143-1154, 2009.
L. Schmidt, Hu, G., and Wendel, J. F., “Genetic Analysis of Seed Storage Proteins in Gossypium”, 2009.
R. A. Rapp, Udall, J. A., and Wendel, J. F., “Genomic expression dominance in allopolyploids”, Bmc Biology, vol. 7, no. 1, p. 18, 2009.
2008
B. Chaudhary, Hovav, R., Rapp, R., Verma, N., Udall, J. A., and Wendel, J. F., “Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense”, Evolution & development, vol. 10, no. 5, pp. 567-582, 2008.
T. L. Dickson, Wilsey, B. J., Busby, R. R., and Gebhart, D. L., “Grassland plant composition alters vehicular disturbance effects in Kansas, USA”, Environmental management, vol. 41, no. 5, pp. 676-684, 2008.
2007
R. J. Percifield, Hawkins, J. S., McCoy, J. - A., Widrlechner, M. P., and Wendel, J. F., “Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L.”, Planta medica, vol. 73, no. 15, p. 1614, 2007.
J. Rong, F Feltus, A., Waghmare, V. N., Pierce, G. J., Chee, P. W., Draye, X., Saranga, Y., Wright, R. J., Wilkins, T. A., and O May, L., “Genetics of complex traits-Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development”, Genetics, vol. 176, no. 4, pp. 2577-2588, 2007.
2006
J. A. Udall, Swanson, J. M., Haller, K., Rapp, R. A., Sparks, M. E., Hatfield, J., Yu, Y., Wu, Y., Dowd, C., and Arpat, A. B., “A global assembly of cotton ESTs”, Genome research, vol. 16, no. 3, pp. 441-450, 2006.
2005
A. Salmon, Ainouche, M. L., and Wendel, J. F., “Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)”, Molecular ecology, vol. 14, no. 4, pp. 1163-1175, 2005.
J. Rong, Pierce, G. J., Waghmare, V. N., Rogers, C. J., Desai, A., Chee, P. W., O May, L., Gannaway, J. R., Wendel, J. F., and Wilkins, T. A., “Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton”, Theoretical and applied genetics, vol. 111, no. 6, pp. 1137-1146, 2005.
V. N. Waghmare, Rong, J., Rogers, C. J., Pierce, G. J., Wendel, J. F., and Paterson, A. H., “Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum”, Theoretical and Applied Genetics, vol. 111, no. 4, pp. 665-676, 2005.
J. F. Wendel and Adams, K. L., “Genome evolution and gene silencing in polyploid cotton”, REGNUM VEGETABILE, vol. 143, p. 271, 2005.
M. L. Ainouche and Wendel, J. F., “Genome technologies, polyploidy and evolution”, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
E. S. Krafsur, Cummings, M. A., Endsley, M. A., Marquez, J. G., and Nason, J. D., “Geographic differentiation in the house fly estimated by microsatellite and mitochondrial variation”, Journal of Heredity, vol. 96, no. 5, pp. 502-512, 2005.
2004
N. Valenzuela, Adams, D. C., Bowden, R. M., Gauger, A. C., and Douglas, M. E., “Geometric morphometric sex estimation for hatchling turtles: a powerful alternative for detecting subtle sexual shape dimorphism”, Copeia, vol. 2004, no. 4, pp. 735-742, 2004.
D. C. Adams, F Rohlf, J., and Slice, D. E., “Geometric morphometrics: ten years of progress following the ‘revolution’”, Italian Journal of Zoology, vol. 71, no. 1, pp. 5-16, 2004.
2003
K. L. Adams, Cronn, R., Percifield, R., and Wendel, J. F., “Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing”, Proceedings of the National Academy of Sciences, vol. 100, no. 8, pp. 4649-4654, 2003.
2002
J. L. Hamrick, Nason, J. D., Fleming, T. H., and Nassar, J. M., “Genetic diversity in columnar cacti”, Columnar cacti and their mutualists: Evolution, Ecology, and Conservation. University of Arizona Press, Tucson, AZ, pp. 122-133, 2002.
2000
J. L. Hamrick, Nason, J. D., Young, A., Boshier, D., and Boyle, T., “Gene flow in forest trees.”, Forest conservation genetics: principles and practice, pp. 81-90, 2000.
J. F. Wendel, “Genome evolution in polyploids”, in Plant molecular evolution, Springer Netherlands, 2000, pp. 225-249.
1998
K. J. Nadelhoffer, Raich, J. W., and Aber, J. D., “A global trend in belowground carbon allocation: comment”, Ecology, vol. 79, no. 5, pp. 1822-1825, 1998.
1997
K. Goodell, Elam, D., Nason, J., and Ellstrand, N., “Gene flow among small populations of a self-incompatible plant: an interaction between demography and genetics.”, American Journal of Botany, vol. 84, no. 10, pp. 1362-1362, 1997.

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