Publications

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2020
J. - F. Cao, Zhao, B., Huang, C. - C., Chen, Z. - W., Zhao, T., Liu, H. - R., Hu, G. - J., Shangguan, X. - X., Shan, C. - M., and Wang, L. - J., “The miR319-Targeted GhTCP4 Promotes the Transition from Cell Elongation to Wall Thickening in Cotton Fiber”, Molecular Plant, 2020.
S. J. Hall, Ye, C., Weintraub, S. R., and Hockaday, W. C., “Molecular trade-offs in soil organic carbon composition at continental scale”, Nature Geoscience, pp. 1-6, 2020.
R. O. N. A. L. D. O. VINÍCIUS-SILVA, Clark, L. G., Fregonezi, J. Nunes, and SANTOS-GONÇALVES, A. N. A. P. A. U. L. A., “Morphological evolution and molecular phylogenetics of the Merostachys clade (Poaceae: Bambusoideae: Bambuseae: Arthrostylidiinae) based on multi-locus plastid sequences”, Botanical Journal of the Linnean Society, 2020.
B. H. Juarez, Moen, D. S., and Adams, D. C., “A Morphological Method to Approximate Jumping Performance in Anurans for Macroevolutionary Studies”, Evolutionary Biology, pp. 1-12, 2020.
2019
E. K. Baken and Adams, D. C., “Macroevolution of arboreality in salamanders”, Ecology and Evolution, 2019.
E. K. Baken, Mellenthin, L. E., and Adams, D. C., “Macroevolution of desiccation‐related morphology in plethodontid salamanders as inferred from a novel surface area to volume ratio estimation approach”, Evolution, 2019.
H. S. Rogers and Fricke, E. C., “Maternal microbes complicate coexistence for tropical trees”, Proceedings of the National Academy of Sciences, p. 201902736, 2019.
C. Ye and Hall, S. J., “Mechanisms underlying limited soil carbon gains in perennial and cover‐cropped bioenergy systems revealed by stable isotopes”, GCB Bioenergy, 2019.
D. G Smedley, Audino, J. A., Grula, C., Porath-Krause, A., Pairett, A. N., Alejandrino, A., Lacey, L., Masters, F., Duncan, P. F., and Strong, E. E., “Molecular phylogeny of the Pectinoidea (Bivalvia) indicates Propeamussiidae to be a non-monophyletic family with one clade sister to the scallops (Pectinidae)”, Molecular Phylogenetics and Evolution, 2019.
A. Checinska Sielaff, H Polley, W., Fuentes-Ramirez, A., Hofmockel, K., and Wilsey, B. J., “Mycorrhizal colonization and its relationship with plant performance differs between exotic and native grassland plant species”, Biological Invasions, 2019.
2018
J. L. Conover, Karimi, N., Stenz, N., Ané, C., Grover, C. E., Skema, C., Tate, J. A., Wolff, K., Logan, S. A., and Wendel, J. F., “A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?”, Journal of Integrative Plant Biology, 2018.
B. W. Perry, Card, D. C., McGlothlin, J. W., Pasquesi, G. I. M., Adams, R. H., Schield, D. R., Hales, N. R., Corbin, A. B., Demuth, J. P., and Hoffmann, F. G., “Molecular adaptations for sensing and securing prey and insight into amniote genome diversity from the garter snake genome”, Genome biology and evolution, 2018.
C. D. Tyrrell, Londoño, X., Prieto, R. Oviedo, Attigala, L., McDonald, K., and Clark, L. G., “Molecular phylogeny and cryptic morphology reveal a new genus of West Indian woody bamboo (Poaceae: Bambusoideae: Bambuseae) hidden by convergent character evolution”, Taxon, vol. 67, no. 5, pp. 916-930, 2018.
C. de Jesus-Costa, Clark, L. G., and SANTOS-GONÇALVES, A. N. A. P. A. U. L. A., “Molecular Phylogeny of Atractantha, and the Phylogenetic Position and Circumscription of Athroostachys (Poaceae: Bambusoideae: Bambuseae: Arthrostylidiinae)”, Systematic Botany, vol. 43, no. 3, pp. 656-663, 2018.
2017
J. M. Jandt, Suryanarayanan, S., Hermanson, J. C., Jeanne, R. L., and Toth, A. L., “Maternal and nourishment factors interact to influence offspring developmental trajectories in social wasps”, Proc. R. Soc. B, vol. 284, no. 1857. The Royal Society, p. 20170651, 2017.
E. A. Addis, Gangloff, E. J., Palacios, M. G., Carr, K. E., and Bronikowski, A. M., “Merging the “Morphology–Performance–Fitness” Paradigm and Life-History Theory in the Eagle Lake Garter Snake Research Project”, Integrative and Comparative Biology, 2017.
S. R. S. Dangal, Tian, H., Zhang, B., Pan, S., Lu, C., and Yang, J., “Methane emission from global livestock sector during 1890‐2014: magnitude, trends and spatio‐temporal patterns”, Global Change Biology, 2017.
Z. Chen, Grover, C. E., Li, P., Wang, Y., Nie, H., Zhao, Y., Wang, M., Liu, F., Zhou, Z., and Wang, X., “Molecular evolution of the plastid genome during diversification of the cotton genus”, Molecular Phylogenetics and Evolution, 2017.
V. Pocius, Debinski, D., and Hellmich, R., “Monarch Oviposition and Larval Survival on Nine Native Milkweed Species During the 2016 Breeding Season”, Farm Progress Reports, vol. 2016, no. 1, p. 73, 2017.
D. C. Adams and Collyer, M. L., “Multivariate Phylogenetic Comparative Methods: Evaluations, Comparisons, and Recommendations”, Systematic Biology, 2017.
E. C. Fricke, Tewksbury, J. J., Wandrag, E. M., and Rogers, H. S., “Mutualistic strategies minimize coextinction in plant–disperser networks”, Proc. R. Soc. B, vol. 284, no. 1854. The Royal Society, p. 20162302, 2017.
2016
J. Pleasants, “Milkweed restoration in the Midwest for monarch butterfly recovery: estimates of milkweeds lost, milkweeds remaining and milkweeds that must be added to increase the monarch population”, Insect Conservation and Diversity, 2016.
2015
E. Sherratt, Adams, D. C., and Serb, J. M., “Macroevolution, phylomorphospace and directional evolution in recessing scallops”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 55. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E166-E166, 2015.
T. S. Schwartz, Arendsee, Z. W., and Bronikowski, A. M., “Mitochondrial divergence between slow-and fast-aging garter snakes”, Experimental Gerontology, 2015.
W. Pett and Lavrov, D., “Mito-nuclear interactions in the evolution of animal mitochondrial tRNA metabolism”, Genome Biology and Evolution, p. evv124, 2015.
A. C. Kraemer, Serb, J. M., and Adams, D. C., “Model toxin level does not directly influence the evolution of mimicry in the salamander Plethodon cinereus”, Evolutionary Ecology, pp. 1-13, 2015.
A. C. Kraemer, Serb, J. M., and Adams, D. C., “Model toxin level does not directly influence the evolution of mimicry in the salamander Plethodon cinereus”, Evolutionary Ecology, pp. 1-13, 2015.
A. M. Wright, Lloyd, G. T., and Hillis, D. M., “Modeling character change heterogeneity in phylogenetic analyses of morphology through the use of priors”, Systematic Biology, p. syv122, 2015.
E. Ruiz-Sanchez, Clark, L. G., Londoño, X., Mejía-Saulés, T., and Cortés, G., “Morphological keys to the genera and species of bamboos (Poaceae: Bambusoideae) of Mexico”, Phytotaxa, vol. 236, no. 1, pp. 1-24, 2015.
L. ‐F. Li, Liu, B., Olsen, K. M., and Wendel, J. F., “Multiple rounds of ancient and recent hybridizations have occurred within the Aegilops–Triticum complex”, New Phytologist, 2015.
2014
M. L. Collyer, Sekora, D. J., and Adams, D. C., “A method for analysis of phenotypic change for phenotypes described by high-dimensional data”, Heredity, 2014.
D. C. Adams, “A METHOD FOR ASSESSING PHYLOGENETIC LEAST SQUARES MODELS FOR SHAPE AND OTHER HIGH‐DIMENSIONAL MULTIVARIATE DATA”, Evolution, vol. 68, no. 9, pp. 2675-2688, 2014.
C. E. Grover, Zhu, X., Grupp, K. K., Jareczek, J. J., Gallagher, J. P., Szadkowski, E., Seijo, J. G., and Wendel, J. F., “Molecular confirmation of species status for the allopolyploid cotton species, Gossypium ekmanianum Wittmack”, Genetic Resources and Crop Evolution, vol. 62, no. 1, pp. 103-114, 2014.
G. Mynhardt, Alejandrino, A., Puslednik, L., Corrales, J., and Serb, J. M., “Molluscan Studies”, Journal of Molluscan Studies, vol. 80, pp. 400-411, 2014.
2013
I. Ibáñez, Gornish, E. S., Buckley, L., Debinski, D. M., Hellmann, J., Helmuth, B., HilleRisLambers, J., Latimer, A. M., Miller‐Rushing, A. J., and Uriarte, M., “Moving forward in global‐change ecology: capitalizing on natural variability”, Ecology and evolution, vol. 3, no. 1, pp. 170-181, 2013.
D. Allen McGranahan, Engle, D. M., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., “Multivariate analysis of rangeland vegetation and soil organic carbon describes degradation, informs restoration and conservation”, Land, vol. 2, no. 3, pp. 328-350, 2013.
2012
A. P. Kuester and Nason, J. D., “Microsatellite loci for Gossypium davidsonii (Malvaceae) and other D-genome, Sonoran Desert endemic cotton species”, American journal of botany, vol. 99, no. 3, pp. e91-e93, 2012.
A. C. Kraemer, Kissner, J., and Adams, D. C., “Morphological color-change in the red-backed salamander (Plethodon cinereus) while kept in captivity”, Copeia, vol. 2012, no. 4, pp. 748-755, 2012.
2011
J. M. Serb, Alejandrino, A., OTÁROLA‐CASTILLO, E. R. I. K., and Adams, D. C., “Morphological convergence of shell shape in distantly related scallop species (Mollusca: Pectinidae)”, Zoological Journal of the Linnean Society, vol. 163, no. 2, pp. 571-584, 2011.
D. C. Adams, Cardini, A., Monteiro, L. R., O'Higgins, P., and Rohlf, F. J., “Morphometrics and phylogenetics: principal components of shape from cranial modules are neither appropriate nor effective cladistic characters”, Journal of Human Evolution, vol. 60, no. 2, pp. 240-243, 2011.
X. Zhang, Serb, J. M., and M Greenlee, H. West, “Mouse retinal development: a dark horse model for systems biology research”, Bioinformatics and biology insights, vol. 5, p. 99, 2011.
2010
T. L. Dickson, Wilsey, B. J., Busby, R. R., and Gebhart, D. L., “Melilotus officinalis (yellow sweetclover) causes large changes in community and ecosystem processes in both the presence and absence of a cover crop”, Biological invasions, vol. 12, no. 1, pp. 65-76, 2010.
D. M. Debinski, Wickham, H., Kindscher, K., Caruthers, J. C., and Germino, M., “Montane meadow change during drought varies with background hydrologic regime and plant functional group”, Ecology, vol. 91, no. 6, pp. 1672-1681, 2010.
Y. Bao, Wendel, J. F., and Ge, S., “Multiple patterns of rDNA evolution following polyploidy in Oryza”, Molecular phylogenetics and evolution, vol. 55, no. 1, pp. 136-142, 2010.
2009
D. A. Losure, Moloney, K. A., and Wilsey, B. J., “Modes of crown vetch invasion and persistence”, The American Midland Naturalist, vol. 161, no. 2, pp. 232-242, 2009.
D. A. Losure, Moloney, K. A., and Wilsey, B. J., “Modes of crown vetch invasion and persistence”, The American Midland Naturalist, vol. 161, no. 2, pp. 232-242, 2009.
2008
R. Hovav, Udall, J. A., Hovav, E., Rapp, R., Flagel, L., and Wendel, J. F., “A majority of cotton genes are expressed in single-celled fiber”, Planta, vol. 227, no. 2, pp. 319-329, 2008.
L. Puslednik and Serb, J. M., “Molecular phylogenetics of the Pectinidae (Mollusca: Bivalvia) and effect of increased taxon sampling and outgroup selection on tree topology”, Molecular Phylogenetics and Evolution, vol. 48, no. 3, pp. 1178-1188, 2008.
E. M. Myers and Adams, D. C., “Morphology is decoupled from interspecific competition in Plethodon salamanders in the Shenandoah Mountains, USA”, Herpetologica, vol. 64, no. 3, pp. 281-289, 2008.
2007
J. Rong, F Feltus, A., Waghmare, V. N., Pierce, G. J., Chee, P. W., Draye, X., Saranga, Y., Wright, R. J., Wilkins, T. A., and O May, L., “Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development”, Genetics, vol. 176, no. 4, pp. 2577-2588, 2007.

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