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A
D. C. Adams, Review of: Sampling and Statistical Methods for Behavioral Ecologists, Quarterly Review of Biology, vol. 75, p. 76, 2000.
D. C. Adams and OTÁROLA‐CASTILLO, E. R. I. K., geomorph: an R package for the collection and analysis of geometric morphometric shape data, Methods in Ecology and Evolution, vol. 4, no. 4, pp. 393-399, 2013.
K. L. Adams, Percifield, R., and Wendel, J. F., Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid, Genetics, vol. 168, no. 4, pp. 2217-2226, 2004.
D. C. Adams and Church, J. O., The evolution of large‐scale body size clines in Plethodon salamanders: evidence of heat‐balance or species‐specific artifact?, Ecography, vol. 34, no. 6, pp. 1067-1075, 2011.
K. L. Adams and Wendel, J. F., Polyploidy and genome evolution in plants, Current opinion in plant biology, vol. 8, no. 2, pp. 135-141, 2005.
D. C. Adams, A METHOD FOR ASSESSING PHYLOGENETIC LEAST SQUARES MODELS FOR SHAPE AND OTHER HIGH‐DIMENSIONAL MULTIVARIATE DATA, Evolution, vol. 68, no. 9, pp. 2675-2688, 2014.
D. C. Adams, Parallel evolution of character displacement driven by competitive selection in terrestrial salamanders, BMC Evolutionary Biology, vol. 10, no. 1, p. 72, 2010.
D. C. Adams and Collyer, M. L., Multivariate Phylogenetic Comparative Methods: Evaluations, Comparisons, and Recommendations, Systematic Biology, 2017.
D. C. Adams, Gurevitch, J., and Rosenberg, M. S., Resampling tests for meta-analysis of ecological data, Ecology, vol. 78, no. 4, pp. 1277-1283, 1997.
E. A. Addis, Gangloff, E. J., Palacios, M. G., Carr, K. E., and Bronikowski, A. M., Merging the “Morphology–Performance–Fitness” Paradigm and Life-History Theory in the Eagle Lake Garter Snake Research Project, Integrative and Comparative Biology, 2017.
M. L. Ainouche and Wendel, J. F., Genome technologies, polyploidy and evolution, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
M. L. Ainouche and Wendel, J. F., Polyploid speciation and genome evolution: Lessons from recent allopolyploids, in Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life, Springer International Publishing, 2014, pp. 87-113.
A. Alejandrino, Puslednik, L., and Serb, J. M., Convergent and parallel evolution in life habit of the scallops (Bivalvia: Pectinidae), BMC Evolutionary Biology, vol. 11, no. 1, p. 164, 2011.
G. R. Almany, De Arruda, M. P., Arthofer, W., Atallah, Z. K., Beissinger, S. R., Berumen, M. L., Bogdanowicz, S. M., Brown, S. D., Bruford, M. W., and Burdine, C., Permanent genetic resources added to molecular ecology resources database 1 May 2009–31 July 2009, Molecular Ecology Resources, vol. 9, no. 6, pp. 1460-1466, 2009.
C. Alonso, Vuorisalo, T., Wilsey, B., and Honkanen, T., Yponomeuta evonymellus outbreaks in southern Finland: spatial synchrony but different local magnitudes, Annales Zoologici Fennici, pp. 179-188, 2000.
S. Altenbach, Anderson, O., Bigwood, D., Cantinhour, S., Coe, E., Datko, A., Heller, S., Kaleikau, E., McCouch, S., and Kohel, R., USDA plant genome research program, ADVANCES IN AGRONOMY, VOL 55, vol. 55, pp. 113-166, 1995.
A
T. M. Anderson, Griffith, D. M., Grace, J. B., Lind, E. M., Adler, P. B., Biederman, L. A., Blumenthal, D. M., Daleo, P., Firn, J., and Hagenah, N., Herbivory and eutrophication mediate grassland plant nutrient responses across a global climatic gradient., Ecology, 2018.
C. Andorf, Beavis, W. D., Hufford, M., Smith, S., Suza, W. P., Wang, K., Woodhouse, M., Yu, J., and Lübberstedt, T., Technological advances in maize breeding: past, present and future, Theoretical and Applied Genetics, pp. 1-33, 2019.
R. A. Y. S. ANDRADE, PIANISSOLA, E. V. A. N. D. R. O. M., VIDAL, K. A. I. O. V. I. N. I. C. I. U. S. D., DA MOTA, A. L. I. N. E. C. O. S. T. A., Clark, L. G., and OLIVEIRA, R. E. Y. J. A. N. E. P., Chusquea parviligulata (Poaceae: Bambusoideae: Bambuseae): a new species of C. subg. Chusquea endemic to the Atlantic rainforest of Bahia, Brazil, Phytotaxa, vol. 405, no. 1, pp. 27-36, 2019.
W. L. Applequist, Cronn, R., and Wendel, J. F., Comparative development of fiber in wild and cultivated cotton, Evolution & development, vol. 3, no. 1, pp. 3-17, 2001.
V. J. Apsit, Hamrick, J. L., and Nason, J. D., Estimating pollen flow and effective population sizes of fragmented Enterolobium cyclocarpum populations in Costa Rica. Estimando el flujo de polen y tamaños efectivos de población en poblaciones fragmentadas de Enterolobium cyclocarpum en Costa Rica., International Botanical Congress. XVI, St Louis, MO, US, 1-7 August 1999, 1999-08-01., 1999.
V. J. Apsit, Hamrick, J. L., and Nason, J. D., Breeding population size of a fragmented population of a Costa Rican dry forest tree species, Journal of Heredity, vol. 92, no. 5, pp. 415-420, 2001.
S. Arif, Adams, D. C., and Wicknick, J. A., Bioclimatic modelling, morphology, and behaviour reveal alternative mechanisms regulating the distributions of two parapatric salamander species, Evolutionary Ecology Research, vol. 9, no. 5, pp. 843-854, 2007.
D. Ashlock, Adams, D. C., and Doty, D., Morphometric grayscale texture analysis using foot patterns, Evolutionary Computation, 2003. CEC'03. The 2003 Congress on, vol. 3. IEEE, pp. 1575-1581, 2003.
C. Aslan, Beckman, N., Rogers, H., Bronstein, J., Zurell, D., Hartig, F., Shea, K., Pejchar, L., Neubert, M., and Poulsen, J., Employing plant functional groups to advance seed dispersal ecology and conservation, AoB PLANTS, 2019.
L. Attigala, FUENTES, A. L. F. R. E. D. O. F., and Clark, L. G., Chusquea sect. Tenellae (Bambuseae, Bambusoideae, Poaceae), a taxonomic revision of a new section from South America, Phytotaxa, vol. 324, no. 3, pp. 239-265, 2017.
L. Attigala, Wysocki, W. P., Duvall, M. R., and Clark, L. G., Phylogenetic estimation and morphological evolution of Arundinarieae (Bambusoideae: Poaceae) based on plastome phylogenomic analysis, Molecular Phylogenetics and Evolution, 2016.
J. N. Auckland, Debinski, D. M., and Clark, W. R., Survival, movement, and resource use of the butterfly Parnassius clodius, Ecological Entomology, vol. 29, no. 2, pp. 139-149, 2004.
B
E. M. Bach and Hofmockel, K. S., A time for every season: soil aggregate turnover stimulates decomposition and reduces carbon loss in grasslands managed for bioenergy, GCB Bioenergy, 2015.
D. Badenhorst, Hillier, L. W., Literman, R., Montiel, E. E., Radhakrishnan, S., Shen, Y., Minx, P., Janes, D., Warren, W. C., and Edwards, S. V., Physical mapping and refinement of the painted turtle genome (Chrysemys picta) inform amniote genome evolution and challenges turtle-bird chromosomal conservation., Genome biology and evolution, 2015.
E. K. Baken and Adams, D. C., Macroevolution of arboreality in salamanders, Ecology and Evolution, 2019.
Y. Bao, Wendel, J. F., and Ge, S., Multiple patterns of rDNA evolution following polyploidy in Oryza, Molecular phylogenetics and evolution, vol. 55, no. 1, pp. 136-142, 2010.
Y. Bao, Hu, G., Flagel, L. E., Salmon, A., Bezanilla, M., Paterson, A. H., Wang, Z., and Wendel, J. F., Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium), Proceedings of the National Academy of Sciences, vol. 108, no. 52, pp. 21152-21157, 2011.
D. A. Baum, Small, R. L., and Wendel, J. F., Biogeography and floral evolution of Baobabs Adansonia, Bombacaceae as inferred from multiple data sets, Systematic Biology, vol. 47, no. 2, pp. 181-207, 1998.
A. E. Bennett, Preedy, K., Golubski, A., Umbanhowar, J., Borrett, S. R., Byrne, L., Apostol, K., Bever, J. D., Biederman, L., and Classen, A. T., Beyond the black box: promoting mathematical collaborations for elucidating interactions in soil ecology, Ecosphere, vol. 10, no. 7, p. e02799, 2019.
A. J. Berens, Tibbetts, E. A., and Toth, A. L., Candidate genes for individual recognition in Polistes fuscatus paper wasps, Journal of Comparative Physiology A, pp. 1-15, 2015.
A. J. Berens, Tibbetts, E. A., and Toth, A. L., Cognitive specialization for learning faces is associated with shifts in the brain transcriptome of a social wasp, Journal of Experimental Biology, vol. 220, no. 12, pp. 2149-2153, 2017.
J. L. Berl, Flaherty, E. A., Danielson, B. J., Kellner, K. F., and Swihart, R. K., Winter ecology of prairie deer mice (Peromyscus maniculatus bairdii) in cultivated habitats: Implications for agricultural ecosystem services, Agriculture, Ecosystems & Environment, vol. 249, pp. 130-136, 2017.
D. Berner, Adams, D. C., GRANDCHAMP, A. ‐C., and Hendry, A. P., Natural selection drives patterns of lake–stream divergence in stickleback foraging morphology, Journal of evolutionary biology, vol. 21, no. 6, pp. 1653-1665, 2008.
C. M. Berns and Adams, D. C., Bill shape and sexual shape dimorphism between two species of temperate hummingbirds: Black-Chinned hummingbird (Archilochus alexandri) and Ruby-Throated hummingbird (A. colubris), The Auk, vol. 127, no. 3, pp. 626-635, 2010.
C. M. Berns and Adams, D. C., Becoming different but staying alike: patterns of sexual size and shape dimorphism in bills of hummingbirds, Evolutionary Biology, vol. 40, no. 2, pp. 246-260, 2013.
L. Betancur, Singh, B., Rapp, R. A., Wendel, J. F., M Marks, D., Roberts, A. W., and Haigler, C. H., Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber, Journal of integrative plant biology, vol. 52, no. 2, pp. 205-220, 2010.
D. Bhattacharya, Lutzoni, F., Reeb, V., Simon, D., Nason, J., and Fernandez, F., Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes, Molecular Biology and Evolution, vol. 17, no. 12, pp. 1971-1984, 2000.
L. A. Biederman, Phelps, J., Ross, B. J., Polzin, M., and Harpole, W. S., Biochar and manure alter few aspects of prairie development: A field test, Agriculture, Ecosystems & Environment, vol. 236, pp. 78-87, 2017.
L. Biederman, Mortensen, B., Fay, P., Hagenah, N., Knops, J., La Pierre, K., Laungani, R., Lind, E., McCulley, R., and Power, S., Nutrient addition shifts plant community composition towards earlier flowering species in some prairie ecoregions in the US Central Plains, PloS one, vol. 12, no. 5, p. e0178440, 2017.
P. Bilinski, Han, Y., Hufford, M. B., Lorant, A., Zhang, P., Jiang, J., and Ross-Ibarra, J., Diverse origins of high copy tandem repeats in grass genomes, PeerJ Preprints, 2016.
P. Bilinski, Han, Y., Hufford, M. B., Lorant, A., Zhang, P., Estep, M. C., Jiang, J., and Ross-Ibarra, J., Genomic abundance is not predictive of tandem repeat localization in grass genomes, PloS one, vol. 12, no. 6, p. e0177896, 2017.

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