Publications

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Journal Article
L. Betancur, Singh, B., Rapp, R. A., Wendel, J. F., M Marks, D., Roberts, A. W., and Haigler, C. H., “Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber”, Journal of integrative plant biology, vol. 52, no. 2, pp. 205-220, 2010.
A. Schnabel, McDonel, P. E., and Wendel, J. F., “Phylogenetic relationships in Gleditsia (Leguminosae) based on ITS sequences”, American journal of botany, vol. 90, no. 2, pp. 310-320, 2003.
L. E. Flagel, Rapp, R. A., Grover, C. E., Widrlechner, M. P., Hawkins, J., Grafenberg, J. L., Álvarez, I., Chung, G. Young, and Wendel, J. F., “Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea”, American journal of botany, vol. 95, no. 6, pp. 756-765, 2008.
C. Grover, Hawkins, J., and Wendel, J. F., “Phylogenetic insights into the pace and pattern of plant genome size evolution”, 2008.
T. Bureau, Hawkins, J. S., Hu, G., Rapp, R. A., Grafenberg, J. L., and Wendel, J. F., “Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium”, Genome, vol. 51, no. 1, pp. 11-18, 2007.
C. E. Grover, Yu, Y., Wing, R. A., Paterson, A. H., and Wendel, J. F., “A phylogenetic analysis of indel dynamics in the cotton genus”, Molecular Biology and Evolution, vol. 25, no. 7, pp. 1415-1428, 2008.
D. S. Senchina, Flagel, L. E., Wendel, J. F., and Kohut, M. L., “Phenetic comparison of sevenEchinacea species based on immunomodulatory characteristics”, Economic botany, vol. 60, no. 3, pp. 205-211, 2006.
S. Renny-Byfield, Gong, L., Gallagher, J. P., and Wendel, J. F., “Persistence of Subgenomes in Paleopolyploid Cotton after 60 My of Evolution”, Molecular biology and evolution, vol. 32, no. 4, pp. 1063-1071, 2015.
R. Cronn, Cedroni, M., Haselkorn, T., Grover, C., and Wendel, J. F., “PCR-mediated recombination in amplification products derived from polyploid cotton”, Theoretical and Applied Genetics, vol. 104, no. 2-3, pp. 482-489, 2002.
R. Hovav, Udall, J. A., Chaudhary, B., Rapp, R., Flagel, L., and Wendel, J. F., “Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant”, Proceedings of the National Academy of Sciences, vol. 105, no. 16, pp. 6191-6195, 2008.
Y. Bao, Hu, G., Flagel, L. E., Salmon, A., Bezanilla, M., Paterson, A. H., Wang, Z., and Wendel, J. F., “Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium)”, Proceedings of the National Academy of Sciences, vol. 108, no. 52, pp. 21152-21157, 2011.
B. Chaudhary, Hovav, R., Flagel, L., Mittler, R., and Wendel, J. F., “Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium)”, Bmc Genomics, vol. 10, no. 1, p. 378, 2009.
R. Hovav, Chaudhary, B., Udall, J. A., Flagel, L., and Wendel, J. F., “Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton”, Genetics, vol. 179, no. 3, pp. 1725-1733, 2008.
J. Doebley, Wendel, J. F., Smith, J. S. C., Stuber, C. W., and Goodman, M. M., “The origin of cornbelt maize: the isozyme evidence”, Economic Botany, vol. 42, no. 1, pp. 120-131, 1988.
C. L. Brubaker, Bourland, F. M., and Wendel, J. F., “The origin and domestication of cotton”, Cotton: Origin, history, technology, and production. John Wiley & Sons, New York, pp. 3-31, 1999.
K. L. Adams, Percifield, R., and Wendel, J. F., “Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid”, Genetics, vol. 168, no. 4, pp. 2217-2226, 2004.
K. L. Adams and Wendel, J. F., “Novel patterns of gene expression in polyploid plants”, TRENDS in Genetics, vol. 21, no. 10, pp. 539-543, 2005.
J. A. Udall, Swanson, J. M., Nettleton, D., Percifield, R. J., and Wendel, J. F., “A novel approach for characterizing expression levels of genes duplicated by polyploidy”, Genetics, vol. 173, no. 3, pp. 1823-1827, 2006.
B. Liu and Wendel, J. F., “Non-Mendelian phenomena in allopolyploid genome evolution”, Current Genomics, vol. 3, no. 6, pp. 489-505, 2002.
J. F. Wendel, “New World tetraploid cottons contain Old World cytoplasm”, Proceedings of the National Academy of Sciences, vol. 86, no. 11, pp. 4132-4136, 1989.
L. G. Clark, Wendel, J. F., and Ven, L. A. Cra, “A new species of Micraira (Poaceae: Micraireae) from northern Western Australia”, 1995.
J. F. Wendel, Goodman, M. M., Stuber, C. W., and Beckett, J. B., “New isozyme systems for maize (Zea mays L.): aconitate hydratase, adenylate kinase, NADH dehydrogenase, and shikimate dehydrogenase”, Biochemical genetics, vol. 26, no. 5-6, pp. 421-445, 1988.
J. Dekker, Burmester, R., and Wendel, J. F., “Mutant Weeds of Iowa: S-Triazine Resistant Pennsylvania Smartweed (Polygonum pensylvanicum)”, Weed Technology, pp. 211-213, 1991.
L. ‐F. Li, Liu, B., Olsen, K. M., and Wendel, J. F., “Multiple rounds of ancient and recent hybridizations have occurred within the Aegilops–Triticum complex”, New Phytologist, 2015.
Y. Bao, Wendel, J. F., and Ge, S., “Multiple patterns of rDNA evolution following polyploidy in Oryza”, Molecular phylogenetics and evolution, vol. 55, no. 1, pp. 136-142, 2010.
M. A. Stanton, J Stewart, M. D., A Pervical, E., and Wendel, J. F., “Morphological diversity and relationships in the A-genome cottons, Gossypium arboreum and G. herbaceum”, Crop science, vol. 34, no. 2, pp. 519-527, 1994.
M. D. Edwards, Stuber, C. W., and Wendel, J. F., “Molecular-marker-facilitated investigations of quantitative-trait loci in maize. I. Numbers, genomic distribution and types of gene action”, Genetics, vol. 116, no. 1, pp. 113-125, 1987.
T. Seelanan, Brubaker, C. L., McD, J., Craven, L. A., and Wendel, J. F., “Molecular systematics of Australian Gossypium section grandicalyx (Malvaceae)”, Systematic Botany, pp. 183-208, 1999.
C. W. Stuber, Edwards, M. D., and Wendel, J. F., “Molecular marker-facilitated investigations of quantitative trait loci in maize. II. Factors influencing yield and its component traits”, Crop Science, vol. 27, no. 4, pp. 639-648, 1987.
J. F. Wendel, McD, J., and Rettig, J. H., “Molecular evidence for homoploid reticulate evolution among Australian species of Gossypium”, Evolution, pp. 694-711, 1991.
J. F. Wendel and Percival, A. E., “Molecular divergence in the Galapagos Islands—Baja California species pair, Gossypium klotzschianum andG. davidsonii (Malvaceae)”, Plant Systematics and Evolution, vol. 171, no. 1-4, pp. 99-115, 1990.
C. R. Parks and Wendel, J. F., “Molecular divergence between Asian and North American species of Liriodendron (Magnoliaceae) with implications for interpretation of fossil floras”, American Journal of Botany, pp. 1243-1256, 1990.
R. A. Rapp, Álvarez, I., and Wendel, J. F., “Molecular confirmation of the position of Gossypium trifurcatum Vollesen”, Genetic Resources and Crop Evolution, vol. 52, no. 6, pp. 749-753, 2005.
C. E. Grover, Zhu, X., Grupp, K. K., Jareczek, J. J., Gallagher, J. P., Szadkowski, E., Seijo, J. G., and Wendel, J. F., “Molecular confirmation of species status for the allopolyploid cotton species, Gossypium ekmanianum Wittmack”, Genetic Resources and Crop Evolution, vol. 62, no. 1, pp. 103-114, 2014.
R. L. Small and Wendel, J. F., “The mitochondrial genome of allotetraploid cotton (Gossypium L.).”, The Journal of heredity, vol. 90, no. 1, pp. 251-253, 1998.
C. Grover, Kim, H., Wing, R. A., and Wendel, J. F., “Microcolinearity in the Allotetraploid Gossypium hirsutum”, Genome Exploitation: Data Mining the Genome, p. 231, 2007.
C. E. Grover, Kim, H. R., Wing, R. A., Paterson, A. H., and Wendel, J. F., “Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium)”, The Plant Journal, vol. 50, no. 6, pp. 995-1006, 2007.
R. Hovav, Udall, J. A., Hovav, E., Rapp, R., Flagel, L., and Wendel, J. F., “A majority of cotton genes are expressed in single-celled fiber”, Planta, vol. 227, no. 2, pp. 319-329, 2008.
R. L. Small, Ryburn, J. A., and Wendel, J. F., “Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.).”, Molecular biology and evolution, vol. 16, no. 4, pp. 491-501, 1999.
K. A. Suiter, Wendel, J. F., and J Case, S., “LINKAGE-1: a PASCAL computer program for the detection and analysis of genetic linkage”, Journal of Heredity, vol. 74, no. 3, pp. 203-204, 1983.
R. J. A. Buggs, Wendel, J. F., Doyle, J. J., Soltis, D. E., Soltis, P. S., and Coate, J. E., “The legacy of diploid progenitors in allopolyploid gene expression patterns”, Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 369, no. 1648, p. 20130354, 2014.
J. E. Coate, Buggs, R. J. A., Wendel, J. F., Doyle, J. J., Soltis, D. E., and Soltis, P. S., “The legacy of diploid progenitors in allopolyploid gene”, 2014.
R. L. Small, Cronn, R. C., and Wendel, J. F., “LAS Johnson Review No. 2. Use of nuclear genes for phylogeny reconstruction in plants”, Australian Systematic Botany, vol. 17, no. 2, pp. 145-170, 2004.
L. Huang, Millet, E., Rong, J., Wendel, J. F., Anikster, Y., Feldman, M., Sotirova, V., Shtereva, L., Zagorska, N., and Dimitrov, B., “ISRAEL JOURNAL OF LIBRARY PLANT SCIENCES jul o 7 2000 Vol. 47, NO. 4, 1^^ RB^ YUBRAH#. ISSN 0792-9978™***”, Israel Journal of Plant Sciences, vol. 47, p. 211, 1999.
J. F. Wendel, Cronn, R. C., Álvarez, I., Liu, B., Small, R. L., and Senchina, D. S., “Intron size and genome size in plants”, Molecular biology and evolution, vol. 19, no. 12, pp. 2346-2352, 2002.
L. H. Rieseberg and Wendel, J. F., “Introgression and its consequences in plants”, Hybrid zones and the evolutionary process, pp. 70-109, 1993.
B. Liu and Wendel, J. F., “Intersimple sequence repeat (ISSR) polymorphisms as a genetic marker system in cotton”, Molecular Ecology Notes, vol. 1, no. 3, pp. 205-208, 2001.
J. T. Page, Huynh, M. D., Liechty, Z. S., Grupp, K., Stelly, D., Hulse, A. M., Ashrafi, H., Van Deynze, A., Wendel, J. F., and Udall, J. A., “Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing”, G3: Genes| Genomes| Genetics, vol. 3, no. 10, pp. 1809-1818, 2013.
K. M. Butterworth, Adams, D. C., Horner, H. T., and Wendel, J. F., “Initiation and early development of fiber in wild and cultivated cotton”, International Journal of Plant Sciences, vol. 170, no. 5, pp. 561-574, 2009.
A. L. Keyte, Percifield, R., Liu, B., and Wendel, J. F., “Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.)”, Journal of Heredity, vol. 97, no. 5, pp. 444-450, 2006.

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