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J. M. Serb, Porath-Krause, A. J., and Pairett, A. N., “Uncovering a gene duplication of the photoreceptive protein, opsin, in scallops (bivalvia: Pectinidae)”, Integrative and comparative biology, p. ict063, 2013.

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R. E. Hanson, M Islam-Faridi, N., Crane, C. F., Zwick, M. S., Czeschin, D. G., Wendel, J. F., McKnight, T. D., H Price, J., and Stelly, D. M., “Ty1-copia-retrotransposon behavior in a polyploid cotton”, Chromosome Research, vol. 8, no. 1, pp. 73-76, 2000.

D. A. N. I. E. L. E. F. PARMA, PIANISSOLA, E. V. A. N. D. R. O. M., VINÍCIUS-SILVA, R. O. N. A. L. D. O., Clark, L. G., and SANTOS-GONÇALVES, A. N. A. P. A. U. L. A., “Two new species of Merostachys (Poaceae: Bambusoideae) from the Brazilian Atlantic forest”, Phytotaxa, vol. 267, no. 3, pp. 219-227, 2016.

E. V. A. N. D. R. O. M. A. C. H. A. D. O. PIANISSOLA, PARMA, D. A. N. I. E. L. E. F. R. E. I. T. A. S., GONÇALVES, A. N. A. P. A. U. L. A. S. A. N. T., and CLARK, L. Y. N. N. G. A. I. L., “Two new species of Chusquea subg. Swallenochloa (Poaceae: Bambusoideae: Bambuseae) from Minas Gerais, Brazil, and complete description of C. caparaoensis”, Phytotaxa, vol. 358, no. 3, pp. 235-250, 2018.

B. J. Wilsey, Parent, G., Roulet, N. T., Moore, T. R., and Potvin, C., “Tropical pasture carbon cycling: relationships between C source/sink strength, above‐ground biomass and grazing”, Ecology Letters, vol. 5, no. 3, pp. 367-376, 2002.

S. Brown, Hall, C. A. S., Knabe, W., Raich, J., Trexler, M. C., and Woomer, P., “Tropical forests: their past, present, and potential future role in the terrestrial carbon budget”, Water, Air, and Soil Pollution, vol. 70, no. 1-4, pp. 71-94, 1993.

E. K. Moody, Alda, F., Capps, K. A., Puebla, O., and Turner, B. L., “Trophic Trait Evolution Explains Variation in Nutrient Excretion Stoichiometry among Panamanian Armored Catfishes (Loricariidae)”, Diversity, vol. 11, no. 6, p. 88, 2019.

J. C. Maerz, Myers, E. M., and Adams, D. C., “Trophic polymorphism in a terrestrial salamander”, Evolutionary Ecology Research, vol. 8, no. 1, pp. 23-35, 2006.

D. Debinski, “Trophic Cascades and Biodiversity in Grand Teton National Park”, University of Wyoming National Park Service Research Center Annual Report, vol. 27, no. 1, pp. 28-32, 2003.

E. Sherratt, Alejandrino, A., Kraemer, A. C., Serb, J. M., and Adams, D. C., “Trends in the sand: directional evolution in the shell shape of recessing scallops (Bivalvia: Pectinidae)”, Evolution, 2016.

A. E. Russell, Raich, J. W., Valverde-Barrantes, O. J., and Fisher, R. F., “Tree species effects on soil properties in experimental plantations in tropical moist forest”, Soil Science Society of America Journal, vol. 71, no. 4, pp. 1389-1397, 2007.

A. C. Geffre, Liu, R., Manfredini, F., Beani, L., Kathirithamby, J., Grozinger, C. M., and Toth, A. L., “Transcriptomics of an extended phenotype: parasite manipulation of wasp social behaviour shifts expression of caste-related genes”, Proc. R. Soc. B, vol. 284, no. 1852. The Royal Society, p. 20170029, 2017.

S. Radhakrishnan, Literman, R., Neuwald, J., Severin, A., and Valenzuela, N., “Transcriptomic responses to environmental temperature by turtles with temperature-dependent and genotypic sex determination assessed by RNAseq inform the genetic architecture of embryonic gonadal development”, PloS one, vol. 12, no. 3, p. e0172044, 2017.

L. Rutter, Carrillo-Tripp, J., Bonning, B. C., Cook, D., Toth, A. L., and Dolezal, A. G., “Transcriptomic responses to diet quality and viral infection in Apis mellifera”, BMC Genomics, vol. 20, no. 1, p. 412, 2019.

N. G. Davis, Houston, D. D., and Nason, J. D., “Transcriptome-Facilitated Development of SNPs for the Sonoran Desert Rock Fig, Ficus petiolaris (Moraceae)”, Applications in Plant Sciences, vol. 3, no. 7, p. 1500028, 2015.

R. Hovav, Faigenboim-Doron, A., Kadmon, N., Hu, G., Zhang, X., Gallagher, J. P., and Wendel, J. F., “A Transcriptome Profile for Developing Seed of Polyploid Cotton”, The Plant Genome, vol. 8, no. 1, 2015.

, “Tradeoffs and coexistence in fluctuating environments: evidence for a key dispersal-fecundity tradeoff in five nonpollinating fig wasps”, American Naturalist, vol. 186, pp. 151-158, 2015.

B. A Duthie, Abbott, K. C., and Nason, J. D., “Trade-Offs and Coexistence: A Lottery Model Applied to Fig Wasp Communities”, The American Naturalist, vol. 183, no. 6, pp. 826-841, 2014.

B. A Duthie, Abbott, K. C., and Nason, J. D., “Trade-offs and coexistence: a lottery model applied to fig wasp communities”, The American Naturalist, vol. 183, no. 6, pp. 826-841, 2014.

J. A. Rudgers, Strauss, S. Y., and Wendel, J. F., “Trade-offs among anti-herbivore resistance traits: insights from Gossypieae (Malvaceae)”, American Journal of Botany, vol. 91, no. 6, pp. 871-880, 2004.

J. Z Chen, Scheffler, B. E., Dennis, E., Triplett, B. A., Zhang, T., Guo, W., Chen, X., Stelly, D. M., Rabinowicz, P. D., and Town, C. D., “Toward sequencing cotton (Gossypium) genomes”, Plant physiology, vol. 145, no. 4, pp. 1303-1310, 2007.

J. M. Serb, “Toward Developing Models to Study the Disease, Ecology, and Evolution of the Eye in Mollusca*”, American Malacological Bulletin, vol. 26, no. 1/2, pp. 3-18, 2008.

A. H. Paterson, Lan, T. H., Reischmann, K. P., Chang, C., Lin, Y. R., Liu, S. C., Burow, M. D., Kowalski, S. P., Katsar, C. S., and DelMonte, T. A., “Toward a unified genetic map of higher plants, transcending the monocot-dicot divergence (vol 14, pg 380, 1996)”, NATURE GENETICS, vol. 15, no. 3. NATURE PUBLISHING CO 345 PARK AVE SOUTH, NEW YORK, NY 10010-1707, pp. 322-322, 1997.

A. H. Paterson, Lan, T. - H., Reischmann, K. P., Chang, C., Lin, Y. - R., Liu, S. - C., Burow, M. D., Kowalski, S. P., Katsar, C. S., and Delmonte, T. A., “Toward a unified genetic map of higher plants, transcending the monocot–dicot divergence”, Nature genetics, vol. 14, no. 4, pp. 380-382, 1996.

G. J. P. Naylor and Adams, D. C., “Total evidence versus relevant evidence: response to O’Leary et al. (2003)”, Systematic Biology, vol. 52, pp. 864-865, 2003.

R. L. Small, Ryburn, J. A., Cronn, R. C., Seelanan, T., and Wendel, J. F., “The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group”, American Journal of Botany, vol. 85, no. 9, pp. 1301-1315, 1998.

B. J. Wilsey and Martin, L. M., “Top‐down control of rare species abundances by native ungulates in a grassland restoration”, Restoration Ecology, 2015.

M. Li, An, H., Angelovici, R., Bagaza, C., Batushansky, A., Clark, L., Coneva, V., Donoghue, M., Edwards, E., and Fajardo, D., “Topological data analysis as a morphometric method: using persistent homology to demarcate a leaf morphospace”, Frontiers in Plant Science, vol. 9, p. 553, 2018.

C. E. Grover, Hawkins, J. S., and Wendel, J. F., “Tobacco genomes quickly go up in smoke”, New Phytologist, vol. 175, no. 4, pp. 599-602, 2007.

E. M. Bach and Hofmockel, K. S., “A time for every season: soil aggregate turnover stimulates decomposition and reduces carbon loss in grasslands managed for bioenergy”, GCB Bioenergy, 2015.

J. W. Raich, “Throughfall and stem flow in mature and year-old wet tropical forest.”, Tropical Ecology, vol. 24, no. 2, pp. 234-243, 1983.

D. W. Trapnell, Hamrick, J. L., and Nason, J. D., “Three‐dimensional fine‐scale genetic structure of the neotropical epiphytic orchid, Laelia rubescens”, Molecular Ecology, vol. 13, no. 5, pp. 1111-1118, 2004.

D. I. Green and Crumpton, W. G., “. THREE-DIMENSIONAL SIMULATION OF THE TEMPERATURE AND RESDIENCE TIME DISTRIBUTION DYNAMICS OF A CONSTRUCTED AGRICULTURAL TREATMENT WETLAND”, Environmental factors affecting the residence time distribution dynamics of constructed agricultural wetlands, vol. 1001, p. 140, 2016.

J. A. Sherwood, Debinski, D. M., and Germino, M. J., “Testing the Effects of Simulated Climate Change Effects Using Open Sided Warming Chambers”, University of Wyoming National Park Service Research Center Annual Report, vol. 33, no. 1, pp. 147-153, 2011.

D. M. Debinski, Germino, M., and Demshar, D., “Testing the Effects of Experimental Snow Removal on Soil Moisture and Plant Responses in Montane Meadows”, University of Wyoming National Park Service Research Center Annual Report, vol. 31, no. 1, pp. 81-87, 2008.

A. J. Tanentzap, Kielstra, B. W., Wilkinson, G. M., Berggren, M., Craig, N., del Giorgio, P. A., Grey, J., Gunn, J. M., Jones, S. E., and Karlsson, J., “Terrestrial support of lake food webs: Synthesis reveals controls over cross-ecosystem resource use”, Science Advances, vol. 3, no. 3, p. e1601765, 2017.

K. J. Williams, Wilsey, B. J., McNaughton, S. J., and Banyikwa, F. F., “Temporally variable rainfall does not limit yields of Serengeti grasses”, Oikos, pp. 463-470, 1998.

J. W. Raich, “Temporal Variability of Soil Respiration in Experimental Tree Plantations in Lowland Costa Rica”, Forests, vol. 8, no. 2, p. 40, 2017.

D. Allen McGranahan, Hovick, T., Elmore, R. Dwayne, Engle, D. M., Fuhlendorf, S. D., Winter, S., Miller, J. R., and Debinski, D. M., “Temporal variability in aboveground plant biomass decreases as spatial variability increases”, Ecology, 2015.

M. Y. Chung, Nason, J. D., Epperson, B. K., and Chung, M. G., “Temporal aspects of the fine-scale genetic structure in a population of Cinnamomum insularimontanum (Lauraceae)”, Heredity, vol. 90, no. 1, pp. 98-106, 2003.

B. A. Klaas, Moloney, K. A., and Danielson, B. J., “The tempo and mode of gopher mound production in a tallgrass prairie remnant”, Ecography, vol. 23, no. 2, pp. 246-256, 2000.

J. M. Refsnider and Janzen, F. J., “Temperature-Dependent Sex Determination under Rapid Anthropogenic Environmental Change: Evolution at a Turtle’s Pace?”, Journal of Heredity, p. esv053, 2015.

Y. Mu, Zhao, B., Sun, B. J., Zeng, Z. G., Valenzuela, N., and DU, W. G., “Temperature-Dependent Sex Determination Ruled Out in the Chinese Soft-Shelled Turtle (Pelodiscus sinensis) via Molecular Cytogenetics and Incubation Experiments across Populations”, Sexual Development, vol. 9, no. 2, 2015.

J. W. Raich, Russell, A. E., Kitayama, K., Parton, W. J., and Vitousek, P. M., “Temperature influences carbon accumulation in moist tropical forests”, Ecology, vol. 87, no. 1, pp. 76-87, 2006.

C. Andorf, Beavis, W. D., Hufford, M., Smith, S., Suza, W. P., Wang, K., Woodhouse, M., Yu, J., and Lübberstedt, T., “Technological advances in maize breeding: past, present and future”, Theoretical and Applied Genetics, pp. 1-33, 2019.

A. E. Percival, Wendel, J. F., and Stewart, J. M., “Taxonomy and germplasm resources”, Cotton: Origin, History, Technology, and Production. WC Smith and JT Cothren eds. John Wiley and Sons, Inc., New York, NY, 1999.

J. F. Wendel and Grover, C. E., “Taxonomy and Evolution of the Cotton Genus, Gossypium”, Cotton, no. agronmonogr57, 2015.

J. M. Serb and Harris, J. Lowrey, Taxonomic Status of the Endangered Winged Mapleleaf Quadrula Fragosa (Conrad, 1835) in Arkansas Using Mitochondrial DNA Sequence of the ND1 Gene: Final Report. 2003.

L. R. Hansen, Hellerstein, D., Ribaudo, M., Williamson, J., Nulph, D., Loesch, C., and Crumpton, W., “Targeting Investments to Cost Effectively Restore andn Protect Wetland Ecosystems: Some Economic Insights”, United States Department of Agriculture, 2015.

C. E. Grover, Salmon, A., and Wendel, J. F., “Targeted sequence capture as a powerful tool for evolutionary analysis1”, American journal of botany, vol. 99, no. 2, pp. 312-319, 2012.

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