Publications

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Journal Article
R. Cronn and Wendel, J. F., Cryptic trysts, genomic mergers, and plant speciation, New Phytologist, vol. 161, no. 1, pp. 133-142, 2004.
J. F. Wendel and Parks, C. R., Cultivar characterization and nomenclatural clarification by protein electrophoresis in Camellia japonica L, American Camellia Yearbook (USA), 1982.
J. F. Wendel and Parks, C. R., Cultivar identification in Camellia japonica L. using allozyme polymorphisms., Journal American Society for Horticultural Science, 1983.
L. Gong, Salmon, A., Yoo, M. - J., Grupp, K. K., Wang, Z., Paterson, A. H., and Wendel, J. F., The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco, Molecular biology and evolution, vol. 29, no. 10, pp. 3023-3036, 2012.
L. Gong, Olson, M., and Wendel, J. F., Cytonuclear evolution of rubisco in four allopolyploid lineages, Molecular biology and evolution, vol. 31, no. 10, pp. 2624-2636, 2014.
J. I. Davis, Simmons, M. P., Stevenson, D. W., and Wendel, J. F., Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences, Systematic Biology, vol. 47, no. 2, pp. 282-310, 1998.
A. J. Reinisch, Dong, J. - M., Brubaker, C. L., Stelly, D. M., Wendel, J. F., and Paterson, A. H., A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome., Genetics, vol. 138, no. 3, pp. 829-847, 1994.
R. L. Small and Wendel, J. F., Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium), Molecular biology and evolution, vol. 19, no. 5, pp. 597-607, 2002.
J. S. Hawkins, Kim, H. R., Nason, J. D., Wing, R. A., and Wendel, J. F., Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium, Genome research, vol. 16, no. 10, pp. 1252-1261, 2006.
X. P. Zhao, Si, Y., Hanson, R. E., Crane, C. F., Price, H. J., Stelly, D. M., Wendel, J. F., and Paterson, N. H., Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton (vol 8, pg 479, 1998), GENOME RESEARCH, vol. 8, no. 6, pp. 682-682, 1998.
D. M. Stelly, Wendel, J. F., and Paterson, A. H., Dispersed Repetitive DNA Has Spread to New Genomes Since Polyploid Formation in Cotton Xin-ping Zhao, Yang Si, Robert E. Hanson, 2 Charles F. Crane, 2 H. James Price, 2, Genome Research, vol. 8, pp. 479-492, 1998.
X. -ping Zhao, Si, Y., Hanson, R. E., Crane, C. F., H Price, J., Stelly, D. M., Wendel, J. F., and Paterson, A. H., Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton, Genome Research, vol. 8, no. 5, pp. 479-492, 1998.
J. F. Wendel and Parks, C. R., Distorted segregation and linkage of alcohol dehydrogenase genes in Camellia japonica L.(Theacease), Biochemical genetics, vol. 22, no. 7-8, pp. 739-748, 1984.
Q. Pan, Wendel, J. F., and Fluhr, R., Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes, Journal of molecular evolution, vol. 50, no. 3, pp. 203-213, 2000.
R. Whitkus, Doebley, J., and Wendel, J. F., DNA-based markers in plants, Nuclear DNA markers in systematics and evolution. Kluwer, Amsterdam, pp. 116-141, 1994.
S. Renny-Byfield and Wendel, J. F., Doubling down on genomes: polyploidy and crop plants, American journal of botany, vol. 101, no. 10, pp. 1711-1725, 2014.
O. Panaud, Jackson, S. A., and Wendel, J. F., Drivers and dynamics of diversity in plant genomes, New Phytologist, vol. 202, no. 1, pp. 15-18, 2014.
L. E. Flagel, Wendel, J. F., and Udall, J. A., Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton, BMC genomics, vol. 13, no. 1, p. 302, 2012.
L. Flagel, Udall, J., Nettleton, D., and Wendel, J. F., Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution, BMC biology, vol. 6, no. 1, p. 16, 2008.
J. F. Wendel, Stuber, C. W., Edwards, M. D., and Goodman, M. M., Duplicated chromosome segments in maize (Zea mays L.): further evidence from hexokinase isozymes, TAG Theoretical and Applied Genetics, vol. 72, no. 2, pp. 178-185, 1986.
R. C. Cronn, Small, R. L., and Wendel, J. F., Duplicated genes evolve independently after polyploid formation in cotton, Proceedings of the National Academy of Sciences, vol. 96, no. 25, pp. 14406-14411, 1999.
J. F. Wendel, Stuber, C. W., Goodman, M. M., and Beckett, J. B., Duplicated plastid and triplicated cytosolic isozymes of triosephosphate isomerase in maize (Zea mays L.), Journal of Heredity, vol. 80, no. 3, pp. 218-228, 1989.
K. L. Adams and Wendel, J. F., Dynamics of duplicated gene expression in Polyploid Cotton, Polyploid and hybrid genomics, pp. 187-194, 2013.
J. F. Wendel, Electrophoretic analysis of genetic variation in wild and cultivated Camellia japonica L., PhD Thesis, University of North Carolina, 1983.
J. F. Wendel, Electrophoretic identification of polyploidCamellia japonica (Theaceae) cultivars and evidence for their sexual origin, Plant systematics and evolution, vol. 145, no. 3-4, pp. 223-226, 1984.
J. F. Wendel, Epigenetic phenomena and the evolution of plant allopolyploids, 中国生物学文摘, vol. 19, no. 4, pp. 8-22, 2005.
B. Liu and Wendel, J. F., Epigenetic phenomena and the evolution of plant allopolyploids, Molecular phylogenetics and evolution, vol. 29, no. 3, pp. 365-379, 2003.
R. A. Rapp and Wendel, J. F., Epigenetics and plant evolution, New Phytologist, vol. 168, no. 1, pp. 81-91, 2005.
J. F. Wendel, Epigenetics and plant evolution., New Phytologist, vol. 168, no. 1, pp. 81-91, 2005.
J. F. Wendel, Edwards, M. D., and Stuber, C. W., Evidence for multilocus genetic control of preferential fertilization in maize, Heredity, vol. 58, no. 2, pp. 297-301, 1987.
M. L. Cedroni, Cronn, R. C., Adams, K. L., Wilkins, T. A., and Wendel, J. F., Evolution and expression of MYB genes in diploid and polyploid cotton, Plant molecular biology, vol. 51, no. 3, pp. 313-325, 2003.
R. Hovav, Udall, J. A., Chaudhary, B., Hovav, E., Flagel, L., Hu, G., and Wendel, J. F., The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism, PLoS Genet, vol. 4, no. 2, p. e25, 2008.
P. M. Fortune, Schierenbeck, K. A., Ainouche, A. K., Jacquemin, J., Wendel, J. F., and Ainouche, M. L., Evolutionary dynamics of Waxy and the origin of hexaploid Spartina species (Poaceae), Molecular phylogenetics and evolution, vol. 43, no. 3, pp. 1040-1055, 2007.
J. J. Doyle, Flagel, L. E., Paterson, A. H., Rapp, R. A., Soltis, D. E., Soltis, P. S., and Wendel, J. F., Evolutionary genetics of genome merger and doubling in plants, Annual review of genetics, vol. 42, pp. 443-461, 2008.
L. E. Flagel and Wendel, J. F., Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation, New Phytologist, vol. 186, no. 1, pp. 184-193, 2010.
K. L. Adams and Wendel, J. F., Exploring the genomic mysteries of polyploidy in cotton, Biological Journal of the Linnean Society, vol. 82, no. 4, pp. 573-581, 2004.
J. F. Wendel, Cronn, R. C., J Johnston, S., and H Price, J., Feast and famine in plant genomes, Genetica, vol. 115, no. 1, pp. 37-47, 2002.
L. E. Flagel and Wendel, J. F., Gene duplication and evolutionary novelty in plants, New Phytologist, vol. 183, no. 3, pp. 557-564, 2009.
R. A. Rapp, Haigler, C. H., Flagel, L., Hovav, R. H., Udall, J. A., and Wendel, J. F., Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication, BMC biology, vol. 8, no. 1, p. 139, 2010.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective, Genetics, 2015.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective, Genetics, vol. 200, no. 1, pp. 91-104, 2015.
K. L. Adams, Cronn, R., Percifield, R., and Wendel, J. F., Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing, Proceedings of the National Academy of Sciences, vol. 100, no. 8, pp. 4649-4654, 2003.
L. Schmidt, Hu, G., and Wendel, J. F., Genetic Analysis of Seed Storage Proteins in Gossypium, 2009.
A. Madlung and Wendel, J. F., Genetic and epigenetic aspects of polyploid evolution in plants, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
A. Salmon, Ainouche, M. L., and Wendel, J. F., Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae), Molecular ecology, vol. 14, no. 4, pp. 1163-1175, 2005.
J. Doebley, Stec, A., Wendel, J. F., and Edwards, M., Genetic and morphological analysis of a maize-teosinte F2 population: implications for the origin of maize, Proceedings of the National Academy of Sciences, vol. 87, no. 24, pp. 9888-9892, 1990.
J. F. Wendel and Parks, C. R., Genetic control of isozyme variation in Camellia japonica L., Journal of Heredity, vol. 73, no. 3, pp. 197-204, 1982.
C. R. Parks, Wendel, J. F., Sewell, M. M., and Qui, Y. L., Genetic control of isozyme variation in the genus Liriodendron L.(Magnoliaceae)., Journal of Heredity, vol. 81, no. 4, pp. 317-323, 1990.
C. R. Parks, Miller, N. G., Wendel, J. F., and McDougal, K. M., Genetic divergence within the genus Liriodendron (Magnoliaceae), Annals of the Missouri Botanical Garden, pp. 658-666, 1983.
D. R. DeJoode and Wendel, J. F., Genetic diversity and origin of the Hawaiian Islands cotton, Gossypium tomentosum, American Journal of Botany, pp. 1311-1319, 1992.

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