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D. L. Peterson, Jakubauskas, M. E., Kindscher, K., and Debinski, D., HYPERSPECTRAL REMOTE SENSING OF NONFORESTED MONTANE VEGETATION COMMUNITIES, 3rd international conference on geospatial information in agriculture and forestry, pp. 5-7, 2001.
J. Dewoody, Nason, J. D., and Smith, M., Hybridization between the threatened herb Boltonia decurrens (Asteraceae) and its widespread congener, B. asteroides, Botany, vol. 89, no. 3, pp. 191-201, 2011.
K. Klier, Leoschke, M. J., and Wendel, J. F., Hybridization and introgression in white and yellow ladyslipper orchids (Cypripedium candidum and C. pubescens), Journal of Heredity, vol. 82, no. 4, pp. 305-318, 1991.
J. D. Nason, Heard, S. B., and Williams, F. R., Host‐associated genetic differentiation in the goldenrod elliptical‐gall moth, Gnorimoschema gallaesolidaginis (Lepidoptera: Gelechiidae), Evolution, vol. 56, no. 7, pp. 1475-1488, 2002.
J. O. StiremanIII, Nason, J. D., and Heard, S. B., Host‐associated genetic differentiation in phytophagous insects: general phenomenon or isolated exceptions? Evidence from a goldenrod‐insect community, Evolution, vol. 59, no. 12, pp. 2573-2587, 2005.
E. J. Gangloff, Holden, K. G., Telemeco, R. S., Baumgard, L. H., and Bronikowski, A. M., Hormonal and metabolic responses to upper temperature extremes in divergent life-history ecotypes of a garter snake, Journal of Experimental Biology, p. jeb. 143107, 2016.
A. G. Dolezal, Hendrix, S. D., Scavo, N. A., Carrillo-Tripp, J., Harris, M. A., M Wheelock, J., O’Neal, M. E., and Toth, A. L., Honey Bee Viruses in Wild Bees: Viral Prevalence, Loads, and Experimental Inoculation, PLOS ONE, vol. 11, no. 11, p. e0166190, 2016.
A. Salmon, Flagel, L., Ying, B., Udall, J. A., and Wendel, J. F., Homoeologous nonreciprocal recombination in polyploid cotton, New Phytologist, vol. 186, no. 1, pp. 123-134, 2010.
C. E. Grover, Gallagher, J. P., Szadkowski, E. P., Yoo, M. J., Flagel, L. E., and Wendel, J. F., Homoeolog expression bias and expression level dominance in allopolyploids, New Phytologist, vol. 196, no. 4, pp. 966-971, 2012.
M. J. Yoo, Szadkowski, E., and Wendel, J. F., Homoeolog expression bias and expression level dominance in allopolyploid cotton, Heredity, vol. 110, no. 2, pp. 171-180, 2013.
T. Bureau, Hu, G., Hawkins, J. S., Grover, C. E., and Wendel, J. F., The history and disposition of transposable elements in polyploid Gossypium, Genome, vol. 53, no. 8, pp. 599-607, 2010.
J. D. Nason, Hamrick, J. L., Fleming, T. H., and Tonsor, S., Historical vicariance and postglacial colonization effects on the evolution of genetic structure in Lophocereus, a Sonoran Desert columnar cactus, Evolution, vol. 56, no. 11, pp. 2214-2226, 2002.
D. C. Adams and Beachy, C. K., Historical explanations of phenotypic variation in the plethodontid salamander Gyrinophilus porphyriticus, Herpetologica, pp. 353-364, 2001.
F. Isbell, Calcagno, V., Hector, A., Connolly, J., W Harpole, S., Reich, P. B., Scherer-Lorenzen, M., Schmid, B., Tilman, D., and van Ruijven, J., High plant diversity is needed to maintain ecosystem services, Nature, vol. 477, no. 7363, pp. 199-202, 2011.
J. M. M. Lewthwaite, Debinski, D. M., and Kerr, J. T., High community turnover and dispersal limitation relative to rapid climate change, Global Ecology and Biogeography, 2016.
J. M. Serb and Oakley, T. H., Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology, Bioessays, vol. 27, no. 11, pp. 1158-1166, 2005.
S. M. Thomas and Moloney, K. A., Hierarchical factors impacting the distribution of an invasive species: landscape context and propagule pressure, Landscape ecology, vol. 28, no. 1, pp. 81-93, 2013.
T. M. Anderson, Griffith, D. M., Grace, J. B., Lind, E. M., Adler, P. B., Biederman, L. A., Blumenthal, D. M., Daleo, P., Firn, J., and Hagenah, N., Herbivory and eutrophication mediate grassland plant nutrient responses across a global climatic gradient., Ecology, 2018.
T. Wiegand and Moloney, K. A., Handbook of spatial point-pattern analysis in ecology. CRC Press, 2013.
C. L. Richards and Wendel, J. F., The hairy problem of epigenetics in evolution, New Phytologist, vol. 191, no. 1, pp. 7-9, 2011.
S. A. Kelchner and Wendel, J. F., Hairpins create minute inversions in non-coding regions of chloroplast DNA, Current genetics, vol. 30, no. 3, pp. 259-262, 1996.
S. Mahady and Debinski, D., Habitat management plan for butterfly species at Wilson's Creek National Battlefield, Iowa State University, 1999.
S. Mahady and Debinski, D., Habitat management plan for butterfly species at Pipestone National Monument, Iowa State University, 1999.
S. Mahady and Debinski, D., Habitat management plan for butterfly species at Homestead National Monument, Iowa State University, 1999.
S. Mahady and Debinski, D., Habitat management plan for butterfly species at Effigy Mounds National Historical Site, Iowa State University, 1999.
S. M. Mitchell, Bodensteiner, B. L., Strickland, J. T., Quick, J. K., and Janzen, F. J., Habitat alteration and survival rates of the ornate box turtle, The Journal of Wildlife Management, 2016.
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M. W. Hester, Wilsey, B. J., and Mendelssohn, I. A., Grazing of Panicum amarum in a Louisiana barrier island dune plant community: management implications for dune restoration projects, Ocean & Coastal Management, vol. 23, no. 3, pp. 213-224, 1994.
D. Allen McGranahan, Engle, D. M., Wilsey, B. J., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., Grazing and an invasive grass confound spatial pattern of exotic and native grassland plant species richness, Basic and Applied Ecology, vol. 13, no. 8, pp. 654-662, 2012.
T. L. Dickson, Wilsey, B. J., Busby, R. R., and Gebhart, D. L., Grassland plant composition alters vehicular disturbance effects in Kansas, USA, Environmental management, vol. 41, no. 5, pp. 676-684, 2008.
D. M. Debinski, Caruthers, J. C., Cook, D., Crowley, J., and Wickham, H., Gradient-based habitat affinities predict species vulnerability to drought, Ecology, vol. 94, no. 5, pp. 1036-1045, 2013.
J. McD. Stewart, Craven, L. A., Brubaker, C., and Wendel, J. F., Gossypium anapoides (Malvaceae), a new species from Western Australia, Novon, vol. 23, no. 4, pp. 447-451, 2015.
K. J. Nadelhoffer, Raich, J. W., and Aber, J. D., A global trend in belowground carbon allocation: comment, Ecology, vol. 79, no. 5, pp. 1822-1825, 1998.
J. W. Raich and Potter, C. S., Global patterns of carbon dioxide emissions from soils on a 0.5 degree grid cell basis, ORNL/CDIAC DB-1015 (3-1996). Carbon Dioxide Information Analysis Center, US Department of Energy, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA, 1996.
J. W. Raich and Potter, C. S., Global patterns of carbon dioxide emission from soils, Global Biogeochemical Cycles, vol. 9, no. 1, pp. 23-36, 1995.
C. Lu and Tian, H., Global nitrogen and phosphorus fertilizer use for agriculture production in the past half century: shifted hot spots and nutrient imbalance, Earth System Science Data, vol. 9, no. 1, p. 181, 2017.
B. Zhang, Tian, H., Lu, C., Dangal, S. R. S., Yang, J., and Pan, S., Global manure nitrogen production and application in cropland during 1860–2014: a 5 arcmin gridded global dataset for Earth system modeling, Earth System Science Data, vol. 9, no. 2, pp. 667-678, 2017.
Z. Yu, Wang, J., Liu, S., Rentch, J. S., Sun, P., and Lu, C., Global gross primary productivity and water use efficiency changes under drought stress, Environmental Research Letters, vol. 12, no. 1, p. 014016, 2017.
J. W. Raich and Schlesinger, W. H., The global carbon dioxide flux in soil respiration and its relationship to vegetation and climate, Tellus B, vol. 44, no. 2, pp. 81-99, 1992.
J. A. Udall, Swanson, J. M., Haller, K., Rapp, R. A., Sparks, M. E., Hatfield, J., Yu, Y., Wu, Y., Dowd, C., and Arpat, A. B., A global assembly of cotton ESTs, Genome research, vol. 16, no. 3, pp. 441-450, 2006.
B. Chaudhary, Hovav, R., Rapp, R., Verma, N., Udall, J. A., and Wendel, J. F., Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense, Evolution & development, vol. 10, no. 5, pp. 567-582, 2008.
D. C. Adams and OTÁROLA‐CASTILLO, E. R. I. K., geomorph: an R package for the collection and analysis of geometric morphometric shape data, Methods in Ecology and Evolution, vol. 4, no. 4, pp. 393-399, 2013.
D. C. Adams, F Rohlf, J., and Slice, D. E., Geometric morphometrics: ten years of progress following the ‘revolution’, Italian Journal of Zoology, vol. 71, no. 1, pp. 5-16, 2004.
N. Valenzuela, Adams, D. C., Bowden, R. M., Gauger, A. C., and Douglas, M. E., Geometric morphometric sex estimation for hatchling turtles: a powerful alternative for detecting subtle sexual shape dimorphism, Copeia, vol. 2004, no. 4, pp. 735-742, 2004.
B. L. Bodensteiner, Warner, D. A., Iverson, J. B., Milne‐Zelman, C. L., Mitchell, T. S., Refsnider, J. M., and Janzen, F. J., Geographic variation in thermal sensitivity of early life traits in a widespread reptile, Ecology and Evolution, 2019.
E. S. Krafsur, Cummings, M. A., Endsley, M. A., Marquez, J. G., and Nason, J. D., Geographic differentiation in the house fly estimated by microsatellite and mitochondrial variation, Journal of Heredity, vol. 96, no. 5, pp. 502-512, 2005.
G. Hu, Houston, N. L., Pathak, D., Schmidt, L., Thelen, J. J., and Wendel, J. F., Genomically biased accumulation of seed storage proteins in allopolyploid cotton, Genetics, vol. 189, no. 3, pp. 1103-1115, 2011.
R. A. Rapp, Udall, J. A., and Wendel, J. F., Genomic expression dominance in allopolyploids, Bmc Biology, vol. 7, no. 1, p. 18, 2009.
P. Bilinski, Han, Y., Hufford, M. B., Lorant, A., Zhang, P., Estep, M. C., Jiang, J., and Ross-Ibarra, J., Genomic abundance is not predictive of tandem repeat localization in grass genomes, PloS one, vol. 12, no. 6, p. e0177896, 2017.
C. Xu, Bai, Y., Lin, X., Zhao, N., Hu, L., Gong, Z., Wendel, J. F., and Liu, B., Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies, Molecular biology and evolution, vol. 31, no. 5, pp. 1066-1076, 2014.

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