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M. L. Ainouche and Wendel, J. F., Genome technologies, polyploidy and evolution, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
J. Greilhuber and Leitch, I. J., Genome size and the phenotype, in Plant Genome Diversity Volume 2, Springer Vienna, 2013, pp. 323-344.
J. F. Wendel, Genome evolution in polyploids, in Plant molecular evolution, Springer Netherlands, 2000, pp. 225-249.
J. F. Wendel and Adams, K. L., Genome evolution and gene silencing in polyploid cotton, REGNUM VEGETABILE, vol. 143, p. 271, 2005.
N. F. Weeden and Wendel, J. F., Genetics of plant isozymes, in Isozymes in plant biology, Springer Netherlands, 1989, pp. 46-72.
J. Rong, F Feltus, A., Waghmare, V. N., Pierce, G. J., Chee, P. W., Draye, X., Saranga, Y., Wright, R. J., Wilkins, T. A., and O May, L., Genetics of complex traits-Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development, Genetics, vol. 176, no. 4, pp. 2577-2588, 2007.
M. D. Edwards, Stuber, C. W., and Wendel, J. F., THE GENETIC-BASIS OF QUANTITATIVE TRAITS-EVIDENCE FROM AN EXPERIMENTAL MAIZE POPULATION, AMERICAN JOURNAL OF BOTANY, vol. 72, no. 6. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 875-876, 1985.
V. N. Waghmare, Rong, J., Rogers, C. J., Pierce, G. J., Wendel, J. F., and Paterson, A. H., Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum, Theoretical and Applied Genetics, vol. 111, no. 4, pp. 665-676, 2005.
J. Rong, Pierce, G. J., Waghmare, V. N., Rogers, C. J., Desai, A., Chee, P. W., O May, L., Gannaway, J. R., Wendel, J. F., and Wilkins, T. A., Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton, Theoretical and applied genetics, vol. 111, no. 6, pp. 1137-1146, 2005.
J. F. Wendel, Olson, P. D., and McD, J., Genetic diversity, introgression, and independent domestication of old world cultivated cottons, American Journal of Botany, pp. 1795-1806, 1989.
R. J. Percifield, Hawkins, J. S., McCoy, J. - A., Widrlechner, M. P., and Wendel, J. F., Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L., Planta medica, vol. 73, no. 15, p. 1614, 2007.
J. F. Wendel, Brubaker, C. L., and A Percival, E., Genetic diversity in Gossypium hirsutum and the origin of upland cotton, American Journal of Botany, pp. 1291-1310, 1992.
J. L. Hamrick, Nason, J. D., Fleming, T. H., and Nassar, J. M., Genetic diversity in columnar cacti, Columnar cacti and their mutualists: Evolution, Ecology, and Conservation. University of Arizona Press, Tucson, AZ, pp. 122-133, 2002.
J. F. Wendel, Rowley, R., and Stewart, J. McD., Genetic diversity in and phylogenetic relationships of the Brazilian endemic cotton, Gossypium mustelinum (Malvaceae), Plant Systematics and Evolution, vol. 192, no. 1-2, pp. 49-59, 1994.
J. M. Pleasants and Wendel, J. F., Genetic diversity in a clonal narrow endemic, Erythronium propullans, and in its widespread progenitor, Erythronium albidum, American Journal of Botany, pp. 1136-1151, 1989.
D. M. Debinski, Genetic diversity assessment in a metapopulation of the butterfly Euphydryas gillettii, Biological Conservation, vol. 70, no. 1, pp. 25-31, 1994.
J. F. Wendel and Parks, C. R., Genetic diversity and population structure in Camellia japonica L.(Theaceae), American Journal of Botany, pp. 52-65, 1985.
D. R. DeJoode and Wendel, J. F., Genetic diversity and origin of the Hawaiian Islands cotton, Gossypium tomentosum, American Journal of Botany, pp. 1311-1319, 1992.
C. R. Parks, Miller, N. G., Wendel, J. F., and McDougal, K. M., Genetic divergence within the genus Liriodendron (Magnoliaceae), Annals of the Missouri Botanical Garden, pp. 658-666, 1983.
C. R. Parks, Wendel, J. F., Sewell, M. M., and Qui, Y. L., Genetic control of isozyme variation in the genus Liriodendron L.(Magnoliaceae)., Journal of Heredity, vol. 81, no. 4, pp. 317-323, 1990.
J. F. Wendel and Parks, C. R., Genetic control of isozyme variation in Camellia japonica L., Journal of Heredity, vol. 73, no. 3, pp. 197-204, 1982.
M. Yoon Chung, Nason, J. D., Lopez-Pujol, J., Yamashiro, T., Yang, B. - Y., Luo, Y. - B., and Chung, M. Gi, Genetic consequences of fragmentation on populations of the terrestrial orchid Cymbidium goeringii, Biological Conservation, vol. 170, pp. 222-231, 2014.
J. Doebley, Stec, A., Wendel, J. F., and Edwards, M., Genetic and morphological analysis of a maize-teosinte F2 population: implications for the origin of maize, Proceedings of the National Academy of Sciences, vol. 87, no. 24, pp. 9888-9892, 1990.
A. Salmon, Ainouche, M. L., and Wendel, J. F., Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae), Molecular ecology, vol. 14, no. 4, pp. 1163-1175, 2005.
A. Madlung and Wendel, J. F., Genetic and epigenetic aspects of polyploid evolution in plants, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
L. Schmidt, Hu, G., and Wendel, J. F., Genetic Analysis of Seed Storage Proteins in Gossypium, 2009.
K. L. Adams, Cronn, R., Percifield, R., and Wendel, J. F., Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing, Proceedings of the National Academy of Sciences, vol. 100, no. 8, pp. 4649-4654, 2003.
D. C. Adams, A generalized K statistic for estimating phylogenetic signal from shape and other high-dimensional multivariate data, Systematic biology, vol. 63, no. 5, pp. 685-697, 2014.
K. A. Moloney, A generalized algorithm for determining category size, Oecologia, vol. 69, no. 2, pp. 176-180, 1986.
D. C. Adams and Collyer, M. L., A general framework for the analysis of phenotypic trajectories in evolutionary studies, Evolution, vol. 63, no. 5, pp. 1143-1154, 2009.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective, Genetics, vol. 200, no. 1, pp. 91-104, 2015.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective, Genetics, 2015.
J. L. Hamrick, Nason, J. D., Young, A., Boshier, D., and Boyle, T., Gene flow in forest trees., Forest conservation genetics: principles and practice, pp. 81-90, 2000.
K. Goodell, Elam, D., Nason, J., and Ellstrand, N., Gene flow among small populations of a self-incompatible plant: an interaction between demography and genetics., American Journal of Botany, vol. 84, no. 10, pp. 1362-1362, 1997.
R. A. Rapp, Haigler, C. H., Flagel, L., Hovav, R. H., Udall, J. A., and Wendel, J. F., Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication, BMC biology, vol. 8, no. 1, p. 139, 2010.
A. S. Rivera, M Pankey, S., Plachetzki, D. C., Villacorta, C., Syme, A. E., Serb, J. M., Omilian, A. R., and Oakley, T. H., Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach, BMC evolutionary biology, vol. 10, no. 1, p. 123, 2010.
L. E. Flagel and Wendel, J. F., Gene duplication and evolutionary novelty in plants, New Phytologist, vol. 183, no. 3, pp. 557-564, 2009.
P. Piras, Colangelo, P., Adams, D. C., Buscalioni, A., Cubo, J., Kotsakis, T., Meloro, C., and Raia, P., The Gavialis–Tomistoma debate: the contribution of skull ontogenetic allometry and growth trajectories to the study of crocodylian relationships, Evolution & development, vol. 12, no. 6, pp. 568-579, 2010.
F
T. D. Leandro, Rodrigues, T. Maria, Clark, L. G., and Scatena, V. Lucia, Fusoid cells in the grass family Poaceae (Poales): a developmental study reveals homologies and suggests new insights into their functional role in young leaves, Annals of Botany, 2018.
D. Kassam, Adams, D. C., and Yamaoka, K., Functional significance of variation in trophic morphology within feeding microhabitat-differentiated cichlid species in Lake Malawi, Animal biology, vol. 54, no. 1, pp. 77-90, 2004.
S. Weiner, Geffre, A., and Toth, A. Lynn, Functional genomics in the wild: A case study with paper wasps shows challenges and prospects for RNA-interference in ecological systems, Genome, no. ja, 2017.
A. J. Krause and Serb, J. M., Functional divergence? Comparing opsin expression in extra-ocular tissues and eyes of the scallop (Pectinidae)., INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 53. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E116-E116, 2013.
D. M. Debinski, Forest fragmentation and matrix effects: the matrix does matter, Journal of Biogeography, vol. 33, no. 10, pp. 1791-1792, 2006.
M. V. Kozlov, Wilsey, B. J., Koricheva, J., and Haukioja, E., Fluctuating asymmetry of birch leaves increases under pollution impact, Journal of Applied Ecology, pp. 1489-1495, 1996.
L. Michael Goodman, Debinski, D. M., and Lyon, N. J., Flowers increase ecosystem biodiversity in Midwestern prairies, Journal of Student Research, 2018.
D. J. Gates and Nason, J. D., Flowering asynchrony and mating system effects on reproductive assurance and mutualism persistence in fragmented fig–fig wasp populations, American journal of botany, vol. 99, no. 4, pp. 757-768, 2012.
J. Derek Scasta, Engle, D. M., Harr, R. N., and Debinski, D. M., Fire induced reproductive mechanisms of a Symphoricarpos (Caprifoliaceae) shrub after dormant season burning, Botanical Studies, vol. 55, no. 1, p. 80, 2014.
K. A. Moloney, Fine-scale spatial and temporal variation in the demography of a perennial bunchgrass, Ecology, pp. 1588-1598, 1988.
A. Lobo, Moloney, K., and Chiariello, N., Fine-scale mapping of a grassland from digitized aerial photography: an approach using image segmentation and discriminant analysis, International Journal of Remote Sensing, vol. 19, no. 1, pp. 65-84, 1998.
M. Yoon Chung, Nason, J. D., Lopez-Pujol, J., Chung, J. Min, Kim, K. - J., Maki, M., and Chung, M. Gi, Fine-scale genetic structure in populations of the spring ephemeral herb Megaleranthis saniculifolia (Ranunculaceae), Flora, 2017.

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