Publications

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Journal Article
R. A. Rapp, Haigler, C. H., Flagel, L., Hovav, R. H., Udall, J. A., and Wendel, J. F., Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication, BMC biology, vol. 8, no. 1, p. 139, 2010.
A. S. Rivera, M Pankey, S., Plachetzki, D. C., Villacorta, C., Syme, A. E., Serb, J. M., Omilian, A. R., and Oakley, T. H., Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach, BMC evolutionary biology, vol. 10, no. 1, p. 123, 2010.
L. E. Flagel and Wendel, J. F., Gene duplication and evolutionary novelty in plants, New Phytologist, vol. 183, no. 3, pp. 557-564, 2009.
P. Piras, Colangelo, P., Adams, D. C., Buscalioni, A., Cubo, J., Kotsakis, T., Meloro, C., and Raia, P., The Gavialis–Tomistoma debate: the contribution of skull ontogenetic allometry and growth trajectories to the study of crocodylian relationships, Evolution & development, vol. 12, no. 6, pp. 568-579, 2010.
T. D. Leandro, Rodrigues, T. Maria, Clark, L. G., and Scatena, V. Lucia, Fusoid cells in the grass family Poaceae (Poales): a developmental study reveals homologies and suggests new insights into their functional role in young leaves, Annals of Botany, 2018.
D. Kassam, Adams, D. C., and Yamaoka, K., Functional significance of variation in trophic morphology within feeding microhabitat-differentiated cichlid species in Lake Malawi, Animal biology, vol. 54, no. 1, pp. 77-90, 2004.
S. Weiner, Geffre, A., and Toth, A. Lynn, Functional genomics in the wild: A case study with paper wasps shows challenges and prospects for RNA-interference in ecological systems, Genome, no. ja, 2017.
D. M. Debinski, Forest fragmentation and matrix effects: the matrix does matter, Journal of Biogeography, vol. 33, no. 10, pp. 1791-1792, 2006.
M. V. Kozlov, Wilsey, B. J., Koricheva, J., and Haukioja, E., Fluctuating asymmetry of birch leaves increases under pollution impact, Journal of Applied Ecology, pp. 1489-1495, 1996.
L. Michael Goodman, Debinski, D. M., and Lyon, N. J., Flowers increase ecosystem biodiversity in Midwestern prairies, Journal of Student Research, 2018.
D. J. Gates and Nason, J. D., Flowering asynchrony and mating system effects on reproductive assurance and mutualism persistence in fragmented fig–fig wasp populations, American journal of botany, vol. 99, no. 4, pp. 757-768, 2012.
J. Derek Scasta, Engle, D. M., Harr, R. N., and Debinski, D. M., Fire induced reproductive mechanisms of a Symphoricarpos (Caprifoliaceae) shrub after dormant season burning, Botanical Studies, vol. 55, no. 1, p. 80, 2014.
K. A. Moloney, Fine-scale spatial and temporal variation in the demography of a perennial bunchgrass, Ecology, pp. 1588-1598, 1988.
A. Lobo, Moloney, K., and Chiariello, N., Fine-scale mapping of a grassland from digitized aerial photography: an approach using image segmentation and discriminant analysis, International Journal of Remote Sensing, vol. 19, no. 1, pp. 65-84, 1998.
M. Yoon Chung, Nason, J. D., Lopez-Pujol, J., Chung, J. Min, Kim, K. - J., Maki, M., and Chung, M. Gi, Fine-scale genetic structure in populations of the spring ephemeral herb Megaleranthis saniculifolia (Ranunculaceae), Flora, 2017.
K. C. Parker, Hamrick, J. L., Parker, A. J., and Nason, J. D., Fine-scale genetic structure in Pinus clausa (Pinaceae) populations: effects of disturbance history, Heredity, vol. 87, no. 1, pp. 99-113, 2001.
O. J. Valverde-Barrantes, Raich, J. W., and Russell, A. E., Fine-root mass, growth and nitrogen content for six tropical tree species, Plant and Soil, vol. 290, no. 1-2, pp. 357-370, 2007.
J. W. Raich, Fine roots regrow rapidly after forest felling. Las raíces finas regeneran rápidamente luego de la tala del bosque., Biotropica., vol. 12, no. 3, pp. 231-232, 1980.
K. J. Nadelhoffer and Raich, J. W., Fine root production estimates and belowground carbon allocation in forest ecosystems, Ecology, pp. 1139-1147, 1992.
A. Tufekcioglu, Raich, J. W., Isenhart, T. M., and Schultz, R. C., Fine root dynamics, coarse root biomass, root distribution, and soil respiration in a multispecies riparian buffer in Central Iowa, USA, Agroforestry Systems, vol. 44, pp. 163-174, 1999.
A. Tufekcioglu, Raich, J. W., Isenhart, T. M., and Schultz, R. C., Fine root dynamics, coarse root biomass, root distribution, and soil respiration in a multispecies riparian buffer in Central Iowa, USA, Agroforestry Systems, vol. 44, no. 2-3, pp. 163-174, 1999.
J. W. Raich, Russell, A. E., and Valverde-Barrantes, O., Fine root decay rates vary widely among lowland tropical tree species, Oecologia, vol. 161, no. 2, pp. 325-330, 2009.
T. Wiegand, Moloney, K. A., Naves, J., and Knauer, F., Finding the missing link between landscape structure and population dynamics: a spatially explicit perspective, The american naturalist, vol. 154, no. 6, pp. 605-627, 1999.
J. Van Goor, Piatscheck, F., Houston, D. D., and Nason, J. D., Figs, pollinators, and parasites: A longitudinal study of the effects of nematode infection on fig wasp fitness, Acta Oecologica, 2018.
D. C. Adams, F Rohlf, J., and Slice, D. E., A field comes of age: geometric morphometrics in the 21st century, Hystrix, the Italian journal of Mammalogy, vol. 24, no. 1, pp. 7-14, 2013.
A. M. Bronikowski, Cords, M., Alberts, S. C., Altmann, J., Brockman, D. K., Fedigan, L. M., Pusey, A., Stoinski, T., Strier, K. B., and Morris, W. F., Female and male life tables for seven wild primate species, Scientific Data, vol. 3, 2016.
S. Lindshield, Danielson, B. J., Rothman, J. M., and Pruetz, J. D., Feeding in fear? How adult male western chimpanzees (Pan troglodytes verus) adjust to predation and savanna habitat pressures, American Journal of Physical Anthropology, 2017.
J. Bohórquez-Herrera, Cruz-Escalona, V. H., Adams, D. C., and Peterson, M. S., Feeding ecomorphology of seven demersal marine fish species in the Mexican Pacific Ocean, Environmental Biology of Fishes, vol. 98, no. 5, pp. 1459-1473, 2015.
J. F. Wendel, Cronn, R. C., J Johnston, S., and H Price, J., Feast and famine in plant genomes, Genetica, vol. 115, no. 1, pp. 37-47, 2002.
K. F. Reeder, Debinski, D. M., and Danielson, B. J., Factors affecting butterfly use of filter strips in Midwestern USA, Agriculture, ecosystems & environment, vol. 109, no. 1, pp. 40-47, 2005.
M. Yoon Chung, Nason, J. D., Sun, B. - Y., Moon, M. - O., Chung, J. Min, Park, C. - W., and Chung, M. Gi, Extremely low levels of genetic variation in the critically endangered monotypic fern genus Mankyua chejuense (Ophioglossaceae) from Korea: Implications for conservation, Biochemical Systematics and Ecology, vol. 38, no. 5, pp. 888-896, 2010.
M. C. Wichmann, Johst, K., Moloney, K. A., Wissel, C., and Jeltsch, F., Extinction risk in periodically fluctuating environments, Ecological Modelling, vol. 167, no. 3, pp. 221-231, 2003.
S. Hartmann, Nason, J. D., and Bhattacharya, D., Extensive ribosomal DNA genic variation in the columnar cactus Lophocereus, Journal of Molecular Evolution, vol. 53, no. 2, pp. 124-134, 2001.
D. V. Lavrov, Adamski, M., Chevaldonné, P., and Adamska, M., Extensive Mitochondrial mRNA Editing and Unusual Mitochondrial Genome Organization in Calcaronean Sponges, Current Biology, 2015.
K. L. Adams and Wendel, J. F., Exploring the genomic mysteries of polyploidy in cotton, Biological Journal of the Linnean Society, vol. 82, no. 4, pp. 573-581, 2004.
S. A. Trefry and Diamond, A. W., Exploring hypotheses for sexual size dimorphism in frigatebirds, Evolutionary Ecology Research, vol. 18, no. 3, pp. 225-252, 2017.
M. E. Dornbush and Wilsey, B. J., Experimental manipulation of soil depth alters species richness and co‐occurrence in restored tallgrass prairie, Journal of ecology, vol. 98, no. 1, pp. 117-125, 2010.
T. S. Mitchell, Refsnider, J. M., Sethuraman, A., Warner, D. A., and Janzen, F. J., Experimental assessment of winter conditions on turtle nesting behaviour, Evolutionary Ecology Research, vol. 18, no. 3, pp. 271-280, 2017.
J. T. Delaney, Moranz, R. A., Debinski, D. M., Engle, D. M., and Miller, J. R., Exotic-Dominated Grasslands Show Signs of Recovery with Cattle Grazing and Fire, PLOS ONE, vol. 11, no. 11, p. e0165758, 2016.
B. J. Wilsey, Barber, K., and Martin, L. M., Exotic grassland species have stronger priority effects than natives regardless of whether they are cultivated or wild genotypes, New Phytologist, vol. 205, no. 2, pp. 928-937, 2015.
J. A. Sherwood and Debinski, D. M., An Examination of Reproductive Phenology with Implications for Understanding Climate Change Effects, University of Wyoming National Park Service Research Center Annual Report, vol. 32, no. 1, pp. 63-67, 2009.
S. J. Snodgrass, Jareczek, J., and Wendel, J. F., An examination of nucleotypic effects in diploid and polyploid cotton, AoB Plants, p. plw082, 2016.
J. A. Sherwood and Debinski, D. M., An Examination of Interannual Population Variation in Parnassius Clodius Butterflies, University of Wyoming National Park Service Research Center Annual Report, vol. 34, no. 1, pp. 121-123, 2011.
L. E. Flagel and Wendel, J. F., Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation, New Phytologist, vol. 186, no. 1, pp. 184-193, 2010.
J. J. Doyle, Flagel, L. E., Paterson, A. H., Rapp, R. A., Soltis, D. E., Soltis, P. S., and Wendel, J. F., Evolutionary genetics of genome merger and doubling in plants, Annual review of genetics, vol. 42, pp. 443-461, 2008.
P. M. Fortune, Schierenbeck, K. A., Ainouche, A. K., Jacquemin, J., Wendel, J. F., and Ainouche, M. L., Evolutionary dynamics of Waxy and the origin of hexaploid Spartina species (Poaceae), Molecular phylogenetics and evolution, vol. 43, no. 3, pp. 1040-1055, 2007.
L. Rüber and Adams, D. C., Evolutionary convergence of body shape and trophic morphology in cichlids from Lake Tanganyika, Journal of Evolutionary Biology, vol. 14, no. 2, pp. 325-332, 2001.
G. Hu, Hovav, R., Grover, C. E., Faigenboim-Doron, A., Kadmon, N., Page, J. T., Udall, J. A., and Wendel, J. F., Evolutionary Conservation and Divergence of Gene Coexpression Networks in Gossypium (Cotton) Seeds, Genome Biology and Evolution, p. evw280, 2017.
D. Outomuro, Adams, D. C., and Johansson, F., The evolution of wing shape in ornamented-winged damselflies (Calopterygidae, Odonata), Evolutionary biology, vol. 40, no. 2, pp. 300-309, 2013.
H. Zhang, Zhu, B., Qi, B., Gou, X., Dong, Y., Xu, C., Zhang, B., Huang, W., Liu, C., and Wang, X., Evolution of the BBAA component of bread wheat during its history at the allohexaploid level, The Plant Cell, vol. 26, no. 7, pp. 2761-2776, 2014.

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