Publications

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2006
J. W. Raich, Russell, A. E., Kitayama, K., Parton, W. J., and Vitousek, P. M., “Temperature influences carbon accumulation in moist tropical forests”, Ecology, vol. 87, no. 1, pp. 76-87, 2006.
J. C. Maerz, Myers, E. M., and Adams, D. C., “Trophic polymorphism in a terrestrial salamander”, Evolutionary Ecology Research, vol. 8, no. 1, pp. 23-35, 2006.
J. A. Eccard, Dean, W. R. J., Wichmann, M. C., Huttunen, S. M., Eskelinen, E., Moloney, K. A., and Jeltsch, F., “Use of large Acacia trees by the cavity dwelling Black-tailed Tree Rat in the Southern Kalahari”, Journal of arid environments, vol. 64, no. 4, pp. 604-615, 2006.
2005
C. I. Castillo-Davis, Miller, D. J., Ball, E. E., Technau, U., Adams, K. L., Wendel, J. F., Neeman, Y., Dahary, D., Levanon, E. Y., and Sorek, R., “553 Multievidence microarray mining”, Genetics, vol. 21, no. 10, pp. 533-582, 2005.
J. F. Wendel and Doyle, J., “7 Polyploidy and evolution in plants”, Plant diversity and evolution: genotypic and phenotypic variation in higher plants, p. 97, 2005.
K. L. Adams and Wendel, J. F., “Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids”, Genetics, vol. 171, no. 4, pp. 2139-2142, 2005.
L. M. Martin, Moloney, K. A., and Wilsey, B. J., “An assessment of grassland restoration success using species diversity components”, Journal of Applied Ecology, vol. 42, no. 2, pp. 327-336, 2005.
M. Yoon Chung, Suh, Y., Lopez-Pujol, J., Nason, J. D., and Chung, M. Gi, “Clonal and fine-scale genetic structure in populations of a restricted Korean endemic, Hosta jonesii (Liliaceae) and the implications for conservation”, Annals of botany, vol. 96, no. 2, pp. 279-288, 2005.
R. C. Schultz, Tufekcioglu, A., Isenhart, T. M., Colletti, J. P., Raich, J. W., and Simpkins, W. W., “Designing Riparian Buffers to Improve their Function”, 2005.
O. Fedrigo, Adams, D. C., and Naylor, G. J. P., “DRUIDS—Detection of regions with unexpected internal deviation from stationarity”, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, vol. 304, no. 2, pp. 119-128, 2005.
T. Wiegand, Revilla, E., and Moloney, K. A., “Effects of habitat loss and fragmentation on population dynamics”, Conservation Biology, vol. 19, no. 1, pp. 108-121, 2005.
J. F. Wendel, “Epigenetic phenomena and the evolution of plant allopolyploids”, 中国生物学文摘, vol. 19, no. 4, pp. 8-22, 2005.
R. A. Rapp and Wendel, J. F., “Epigenetics and plant evolution”, New Phytologist, vol. 168, no. 1, pp. 81-91, 2005.
J. F. Wendel, “Epigenetics and plant evolution.”, New Phytologist, vol. 168, no. 1, pp. 81-91, 2005.
J. W. Raich and Mora, G., “Estimating root plus rhizosphere contributions to soil respiration in annual croplands”, Soil Science Society of America Journal, vol. 69, no. 3, pp. 634-639, 2005.
S. Shepherd and Debinski, D. M., “Evaluation of isolated and integrated prairie reconstructions as habitat for prairie butterflies”, Biological Conservation, vol. 126, no. 1, pp. 51-61, 2005.
K. F. Reeder, Debinski, D. M., and Danielson, B. J., “Factors affecting butterfly use of filter strips in Midwestern USA”, Agriculture, ecosystems & environment, vol. 109, no. 1, pp. 40-47, 2005.
A. Salmon, Ainouche, M. L., and Wendel, J. F., “Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)”, Molecular ecology, vol. 14, no. 4, pp. 1163-1175, 2005.
J. Rong, Pierce, G. J., Waghmare, V. N., Rogers, C. J., Desai, A., Chee, P. W., O May, L., Gannaway, J. R., Wendel, J. F., and Wilkins, T. A., “Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton”, Theoretical and applied genetics, vol. 111, no. 6, pp. 1137-1146, 2005.
V. N. Waghmare, Rong, J., Rogers, C. J., Pierce, G. J., Wendel, J. F., and Paterson, A. H., “Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum”, Theoretical and Applied Genetics, vol. 111, no. 4, pp. 665-676, 2005.
J. F. Wendel and Adams, K. L., “Genome evolution and gene silencing in polyploid cotton”, REGNUM VEGETABILE, vol. 143, p. 271, 2005.
M. L. Ainouche and Wendel, J. F., “Genome technologies, polyploidy and evolution”, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
E. S. Krafsur, Cummings, M. A., Endsley, M. A., Marquez, J. G., and Nason, J. D., “Geographic differentiation in the house fly estimated by microsatellite and mitochondrial variation”, Journal of Heredity, vol. 96, no. 5, pp. 502-512, 2005.
J. M. Serb and Oakley, T. H., “Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology”, Bioessays, vol. 27, no. 11, pp. 1158-1166, 2005.
J. O. StiremanIII, Nason, J. D., and Heard, S. B., “Host‐associated genetic differentiation in phytophagous insects: general phenomenon or isolated exceptions? Evidence from a goldenrod‐insect community”, Evolution, vol. 59, no. 12, pp. 2573-2587, 2005.
J. S. Hawkins, Pleasants, J., and Wendel, J. F., “Identification of AFLP markers that discriminate between cultivated cotton and the Hawaiian island endemic, Gossypium tomentosumNuttall ex Seeman”, Genetic Resources and Crop Evolution, vol. 52, no. 8, pp. 1069-1078, 2005.
B. J. Wilsey, “Importance of species replication in understanding plant invasions into North American grasslands”, in Invasive Plants: Ecological and Agricultural Aspects, Birkhäuser Basel, 2005, pp. 61-75.
R. A. Rapp, Álvarez, I., and Wendel, J. F., “Molecular confirmation of the position of Gossypium trifurcatum Vollesen”, Genetic Resources and Crop Evolution, vol. 52, no. 6, pp. 749-753, 2005.
R. A. Rapp, Álvarez, I., and Wendel, J. F., “Molecular confirmation of the position of Gossypium trifurcatum Vollesen”, Genetic Resources and Crop Evolution, vol. 52, no. 6, pp. 749-753, 2005.
D. M. Debinski, “Montane Meadows as a Microcosm for Predicting Global Change”, University of Wyoming National Park Service Research Center Annual Report, vol. 29, no. 1, pp. 70-73, 2005.
D. C. Plachetzki, Serb, J. M., and Oakley, T. H., “New insights into the evolutionary history of photoreceptor cells”, Trends in ecology & evolution, vol. 20, no. 9, pp. 465-467, 2005.
K. L. Adams and Wendel, J. F., “Novel patterns of gene expression in polyploid plants”, TRENDS in Genetics, vol. 21, no. 10, pp. 539-543, 2005.
M. Yoon Chung, Nason, J. D., and Chung, M. Gi, “Patterns of hybridization and population genetic structure in the terrestrial orchids Liparis kumokiri and Liparis makinoana (Orchidaceae) in sympatric populations”, Molecular Ecology, vol. 14, no. 14, pp. 4389-4402, 2005.
W. H Polley, Derner, J. D., and Wilsey, B. J., “Patterns of plant species diversity in remnant and restored tallgrass prairies”, Restoration Ecology, vol. 13, no. 3, pp. 480-487, 2005.
D. C. Campbell, Serb, J. M., Buhay, J. E., Roe, K. J., Minton, R. L., and Lydeard, C., “Phylogeny of North American amblemines (Bivalvia, Unionoida): prodigious polyphyly proves pervasive across genera”, Invertebrate Biology, vol. 124, no. 2, pp. 131-164, 2005.
I. Álvarez, Cronn, R., and Wendel, J. F., “Phylogeny of the New World diploid cottons (Gossypium L., Malvaceae) based on sequences of three low-copy nuclear genes”, Plant Systematics and Evolution, vol. 252, no. 3-4, pp. 199-214, 2005.
K. L. Adams and Wendel, J. F., “Polyploidy and genome evolution in plants”, Current opinion in plant biology, vol. 8, no. 2, pp. 135-141, 2005.
L. L. Hinze, Kresovich, S., Nason, J. D., and Lamkey, K. R., “Population genetic diversity in a maize reciprocal recurrent selection program”, Crop science, vol. 45, no. 6, pp. 2435-2442, 2005.
B. J. Wilsey, Martin, L. M., and H Polley, W., “Predicting Plant Extinction Based on Species‐Area Curves in Prairie Fragments with High Beta Richness”, Conservation Biology, vol. 19, no. 6, pp. 1835-1841, 2005.
S. Shepherd and Debinski, D. M., “Reintroduction of Regal Fritillary (Speyeria idalia)”, Ecological Restoration, vol. 23, no. 4, 2005.
B. J. Wilsey, Chalcraft, D. R., Bowles, C. M., and Willig, M. R., “Relationships among indices suggest that richness is an incomplete surrogate for grassland biodiversity”, Ecology, vol. 86, no. 5, pp. 1178-1184, 2005.
D. M. Debinski, VanNimwegen, R. E., and Jakubauskas, M. E., “Remotely Sensed Mountain Meadows”, Bulletin of the Ecological Society of America, vol. 86, no. 3, pp. 127-127, 2005.
M. Y. Chung, Nason, J. D., and Chung, M. G., “Spatial genetic structure in populations of the terrestrial orchid Orchis cyclochila (Orchidaceae)”, Plant Systematics and Evolution, vol. 254, no. 3-4, pp. 209-219, 2005.
2004
J. Rong, Abbey, C., Bowers, J. E., Brubaker, C. L., Chang, C., Chee, P. W., Delmonte, T. A., Ding, X., Garza, J. J., and Marler, B. S., “A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium)”, Genetics, vol. 166, no. 1, pp. 389-417, 2004.
M. V. Santelmann, White, D., Freemark, K., Nassauer, J. Iverson, Eilers, J. M., Vache, K. B., Danielson, B. J., Corry, R. C., Clark, M. E., and Polasky, S. T. E. P. H. E. N., “Assessing alternative futures for agriculture in Iowa, USA”, Landscape ecology, vol. 19, no. 4, pp. 357-374, 2004.
J. C. Su, Debinski, D. M., Jakubauskas, M. E., and Kindscher, K., “Beyond species richness: Community similarity as a measure of cross‐taxon congruence for coarse‐filter conservation”, Conservation Biology, vol. 18, no. 1, pp. 167-173, 2004.
D. C. Adams, “Character displacement via aggressive interference in Appalachian salamanders”, Ecology, vol. 85, no. 10, pp. 2664-2670, 2004.
R. Cronn and Wendel, J. F., “Cryptic trysts, genomic mergers, and plant speciation”, New Phytologist, vol. 161, no. 1, pp. 133-142, 2004.
K. L. Adams and Wendel, J. F., “Exploring the genomic mysteries of polyploidy in cotton”, Biological Journal of the Linnean Society, vol. 82, no. 4, pp. 573-581, 2004.
D. Kassam, Adams, D. C., and Yamaoka, K., “Functional significance of variation in trophic morphology within feeding microhabitat-differentiated cichlid species in Lake Malawi”, Animal biology, vol. 54, no. 1, pp. 77-90, 2004.

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