Publications

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2013
D. M. Debinski, Caruthers, J., Cook, D., Crowley, J., and Wickham, H., Coenonympha haydenii Responds to Drought, Bulletin of the Ecological Society of America, vol. 94, no. 2, pp. 182-182, 2013.
Y. Huang, Martin, L. M., Isbell, F. I., and Wilsey, B. J., Is community persistence related to diversity? A test with prairie species in a long-term experiment, Basic and Applied Ecology, vol. 14, no. 3, pp. 199-207, 2013.
J. Deitloff, Petersen, J. D., and Adams, D. C., Complex species interactions lead to unpredictable outcomes in Plethodon, Herpetologica, vol. 69, no. 1, pp. 1-10, 2013.
L. Gong, Kakrana, A., Arikit, S., Meyers, B. C., and Wendel, J. F., Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species, Genome biology and evolution, vol. 5, no. 12, pp. 2449-2459, 2013.
K. M. Olsen and Wendel, J. F., Crop plants as models for understanding plant adaptation and diversification, Frontiers in plant science, vol. 4, 2013.
A. N. Pairett and Serb, J. M., De novo assembly and characterization of two transcriptomes reveal multiple light-mediated functions in the scallop eye (Bivalvia: Pectinidae), 2013.
A. N. Pairett, Serb, J. M., and Foulkes, N. S., De Novo Assembly and Characterization of Two Transcriptomes Reveal Multiple Light-Mediated Functions in the Scallop Eye, 2013.
L. Jesse, Collyer, M., Moloney, K., and Obrycki, J. J., Distribution of Megastigmus aculeatus (Hymenoptera: Torymidae) and the levels of seed predation of Rosa multiflora (Rosaceae), Weed Biology and Management, vol. 13, no. 3, pp. 79-88, 2013.
K. L. Adams and Wendel, J. F., Dynamics of duplicated gene expression in Polyploid Cotton, Polyploid and hybrid genomics, pp. 187-194, 2013.
R. C. Garrick, Nason, J. D., Fernández‐Manjarrés, J. F., and Dyer, R. J., Ecological coassociations influence species' responses to past climatic change: an example from a Sonoran Desert bark beetle, Molecular ecology, vol. 22, no. 12, pp. 3345-3361, 2013.
R. A. Moranz, Debinski, D. M., Winkler, L., Trager, J., McGranahan, D. A., Engle, D. M., and Miller, J. R., Effects of grassland management practices on ant functional groups in central North America, Journal of insect conservation, vol. 17, no. 4, pp. 699-713, 2013.
X. Zhang, M Greenlee, H. West, and Serb, J. M., EnRICH: extraction and ranking using integration and criteria heuristics, BMC systems biology, vol. 7, no. 1, p. 4, 2013.
D. Outomuro, Adams, D. C., and Johansson, F., The evolution of wing shape in ornamented-winged damselflies (Calopterygidae, Odonata), Evolutionary biology, vol. 40, no. 2, pp. 300-309, 2013.
D. C. Adams, F Rohlf, J., and Slice, D. E., A field comes of age: geometric morphometrics in the 21st century, Hystrix, the Italian journal of Mammalogy, vol. 24, no. 1, pp. 7-14, 2013.
A. J. Krause and Serb, J. M., Functional divergence? Comparing opsin expression in extra-ocular tissues and eyes of the scallop (Pectinidae)., INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 53. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E116-E116, 2013.
A. Madlung and Wendel, J. F., Genetic and epigenetic aspects of polyploid evolution in plants, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
J. Greilhuber and Leitch, I. J., Genome size and the phenotype, in Plant Genome Diversity Volume 2, Springer Vienna, 2013, pp. 323-344.
D. C. Adams and OTÁROLA‐CASTILLO, E. R. I. K., geomorph: an R package for the collection and analysis of geometric morphometric shape data, Methods in Ecology and Evolution, vol. 4, no. 4, pp. 393-399, 2013.
D. M. Debinski, Caruthers, J. C., Cook, D., Crowley, J., and Wickham, H., Gradient-based habitat affinities predict species vulnerability to drought, Ecology, vol. 94, no. 5, pp. 1036-1045, 2013.
T. Wiegand and Moloney, K. A., Handbook of spatial point-pattern analysis in ecology. CRC Press, 2013.
S. M. Thomas and Moloney, K. A., Hierarchical factors impacting the distribution of an invasive species: landscape context and propagule pressure, Landscape ecology, vol. 28, no. 1, pp. 81-93, 2013.
M. J. Yoo, Szadkowski, E., and Wendel, J. F., Homoeolog expression bias and expression level dominance in allopolyploid cotton, Heredity, vol. 110, no. 2, pp. 171-180, 2013.
D. Allen McGranahan, Engle, D. M., Fuhlendorf, S. D., Winter, S. L., Miller, J. R., and Debinski, D. M., Inconsistent outcomes of heterogeneity-based management underscore importance of matching evaluation to conservation objectives, Environmental Science & Policy, vol. 31, pp. 53-60, 2013.
M. Schat, Schafer, J. L., Mudrak, E. L., Parag, H. A., Moloney, K. A., Holzapfel, C., Close, S. L., Menge, B. A., Van Appledorn, M., and Baker, M. E., Influence of soil disturbance, seed pressure, aridity, and burn history on community structure of winter annuals in North American deserts, 98th ESA Annual Meeting, 2013.
J. T. Page, Huynh, M. D., Liechty, Z. S., Grupp, K., Stelly, D., Hulse, A. M., Ashrafi, H., Van Deynze, A., Wendel, J. F., and Udall, J. A., Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing, G3: Genes| Genomes| Genetics, vol. 3, no. 10, pp. 1809-1818, 2013.
C. D. Kelly, Folinsbee, K. E., Adams, D. C., and Jennions, M. D., Intraspecific sexual size and shape dimorphism in an Australian freshwater fish differs with respect to a biogeographic barrier and latitude, Evolutionary Biology, vol. 40, no. 3, pp. 408-419, 2013.
D. Allen McGranahan, Engle, D. M., Miller, J. R., and Debinski, D. M., An invasive grass increases live fuel proportion and reduces fire spread in a simulated grassland, Ecosystems, vol. 16, no. 1, pp. 158-169, 2013.
J. F. Wendel, Jeans, Genes, and The Independent Domestications Of Cotton, Plant and Animal Genome XXI Conference. Plant and Animal Genome, 2013.
I. Ibáñez, Gornish, E. S., Buckley, L., Debinski, D. M., Hellmann, J., Helmuth, B., HilleRisLambers, J., Latimer, A. M., Miller‐Rushing, A. J., and Uriarte, M., Moving forward in global‐change ecology: capitalizing on natural variability, Ecology and evolution, vol. 3, no. 1, pp. 170-181, 2013.
D. Allen McGranahan, Engle, D. M., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., Multivariate analysis of rangeland vegetation and soil organic carbon describes degradation, informs restoration and conservation, Land, vol. 2, no. 3, pp. 328-350, 2013.
H. U. I. Yu and Nason, J. D., Nuclear and chloroplast DNA phylogeography of Ficus hirta: obligate pollination mutualism and constraints on range expansion in response to climate change, New Phytologist, vol. 197, no. 1, pp. 276-289, 2013.
M. Lloyd Collyer and Adams, D. C., Phenotypic trajectory analysis: comparison of shape change patterns in evolution and ecology, Hystrix, the Italian Journal of Mammalogy, vol. 24, no. 1, pp. 75-83, 2013.
C. P. Ceballos, Adams, D. C., Iverson, J. B., and Valenzuela, N., Phylogenetic patterns of sexual size dimorphism in turtles and their implications for Rensch’s rule, Evolutionary Biology, vol. 40, no. 2, pp. 194-208, 2013.
W. H Polley, Isbell, F. I., and Wilsey, B. J., Plant functional traits improve diversity‐based predictions of temporal stability of grassland productivity, Oikos, vol. 122, no. 9, pp. 1275-1282, 2013.
C. Mazancourt, Isbell, F., Larocque, A., Berendse, F., Luca, E., Grace, J. B., Haegeman, B., H Polley, W., Roscher, C., and Schmid, B., Predicting ecosystem stability from community composition and biodiversity, Ecology Letters, vol. 16, no. 5, pp. 617-625, 2013.
G. Hu, Koh, J., Yoo, M. ‐J., Grupp, K., Chen, S., and Wendel, J. F., Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense, New Phytologist, vol. 200, no. 2, pp. 570-582, 2013.
D. C. Adams, Quantifying and comparing phylogenetic evolutionary rates for shape and other high-dimensional phenotypic data, Systematic biology, p. syt105, 2013.
P. P. Daneshgar, H Polley, W., and Wilsey, B. J., Simple plant traits explain functional group diversity decline in novel grassland communities of Texas, Plant ecology, vol. 214, no. 2, pp. 231-241, 2013.
S. A. Weiner, Galbraith, D. A., Adams, D. C., Valenzuela, N., Noll, F. B., Grozinger, C. M., and Toth, A. L., A survey of DNA methylation across social insect species, life stages, and castes reveals abundant and caste-associated methylation in a primitively social wasp, Naturwissenschaften, vol. 100, no. 8, pp. 795-799, 2013.
J. M. Serb, Porath-Krause, A. J., and Pairett, A. N., Uncovering a gene duplication of the photoreceptive protein, opsin, in scallops (bivalvia: Pectinidae), Integrative and comparative biology, p. ict063, 2013.
J. M. Serb and Krause, A. J., Uncovering gene family expansion and molecular convergence of the photoreceptive protein opsin in scallop (Bivalvia: Pectinidae), INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 53. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E194-E194, 2013.
D. Outomuro, Adams, D. C., and Johansson, F., Wing shape allometry and aerodynamics in calopterygid damselflies: a comparative approach, BMC evolutionary biology, vol. 13, no. 1, p. 118, 2013.
2014
J. W. Raich, Clark, D. A., Schwendenmann, L., and Wood, T. E., Aboveground tree growth varies with belowground carbon allocation in a tropical rainforest environment, 2014.
S. Renny-Byfield, Gallagher, J. P., Grover, C. E., Szadkowski, E., Page, J. T., Udall, J. A., Wang, X., Paterson, A. H., and Wendel, J. F., Ancient gene duplicates in Gossypium (Cotton) exhibit near-complete expression divergence, Genome biology and evolution, vol. 6, no. 3, pp. 559-571, 2014.
P. G. HARNIK, Serb, J. M., Adams, D. C., RIEMANN, R., and SMITH, T., ARE CHANGING ENVIRONMENTS REFLECTED IN THE MORPHOLOGICAL DISPARITY OF FOSSIL AND RECENT SCALLOPS FROM THE TROPICAL AMERICAS?, 2014 GSA Annual Meeting in Vancouver, British Columbia, 2014.
D. C. Adams and Felice, R. N., Assessing trait covariation and morphological integration on phylogenies using evolutionary covariance matrices, PloS one, vol. 9, no. 4, p. e94335, 2014.
L. M. Martin, H Polley, W., Daneshgar, P. P., Harris, M. A., and Wilsey, B. J., Biodiversity, photosynthetic mode, and ecosystem services differ between native and novel ecosystems, Oecologia, vol. 175, no. 2, pp. 687-697, 2014.
R. E. Masonbrink, Gallagher, J. P., Jareczek, J. J., Renny-Byfield, S., Grover, C. E., Gong, L., and Wendel, J. F., CenH3 evolution in diploids and polyploids of three angiosperm genera, BMC plant biology, vol. 14, no. 1, p. 383, 2014.
A. C. Kraemer, Serb, J. M., and Adams, D. C., Coevolution of Coloration and Conspicuousness in a Batesian Mimic, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 54. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E114-E114, 2014.
M. - J. Yoo and Wendel, J. F., Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome, 2014.

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