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L. Gong, Kakrana, A., Arikit, S., Meyers, B. C., and Wendel, J. F., Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species, Genome biology and evolution, vol. 5, no. 12, pp. 2449-2459, 2013.
B. S. Gaut, Clark, L. G., Wendel, J. F., and Muse, S. V., Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae)., Molecular Biology and Evolution, vol. 14, no. 7, pp. 769-777, 1997.
C. L. Brubaker, Paterson, A. H., and Wendel, J. F., Comparative genetic mapping of allotetraploid cotton and its diploid progenitors, Genome, vol. 42, no. 2, pp. 184-203, 1999.
M. - J. Yoo and Wendel, J. F., Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome, 2014.
W. L. Applequist, Cronn, R., and Wendel, J. F., Comparative development of fiber in wild and cultivated cotton, Evolution & development, vol. 3, no. 1, pp. 3-17, 2001.
L. Gong, Masonbrink, R. E., Grover, C. E., Renny-Byfield, S., and Wendel, J. F., A Cluster of Recently Inserted Transposable Elements Associated with siRNAs in, The Plant Genome, 2015.
A. Schnabel and Wendel, J. F., Cladistic biogeography of Gleditsia (Leguminosae) based on ndhF and rpl16 chloroplast gene sequences, American Journal of Botany, vol. 85, no. 12, pp. 1753-1765, 1998.
R. E. Masonbrink, Gallagher, J. P., Jareczek, J. J., Renny-Byfield, S., Grover, C. E., Gong, L., and Wendel, J. F., CenH3 evolution in diploids and polyploids of three angiosperm genera, BMC plant biology, vol. 14, no. 1, p. 383, 2014.
C. E. Grover, Gallagher, J. P., and Wendel, J. F., Candidate Gene Identification of Flowering Time Genes in Cotton, The Plant Genome, 2015.
C. E. Grover, Grupp, K. K., Wanzek, R. J., and Wendel, J. F., Assessing the monophyly of polyploid Gossypium species, Plant systematics and evolution, vol. 298, no. 6, pp. 1177-1183, 2012.
J. F. Doebley and Wendel, J. F., Application of RFLPs to plant systematics, Development and application of molecular markers to problems in plant genetics. New York, USA Cold Spring Harbor Laboratories, pp. 57-67, 1989.
J. F. Wendel and Parks, C. R., Application of electrophoresis to taxonomic and breeding problems in Camellias, Camellia J, vol. 34, no. 4, pp. 39-41, 1979.
S. Renny-Byfield, Gallagher, J. P., Grover, C. E., Szadkowski, E., Page, J. T., Udall, J. A., Wang, X., Paterson, A. H., and Wendel, J. F., Ancient gene duplicates in Gossypium (Cotton) exhibit near-complete expression divergence, Genome biology and evolution, vol. 6, no. 3, pp. 559-571, 2014.
R. Cronn, Brothers, M., Klier, K., Bretting, P. K., and Wendel, J. F., Allozyme variation in domesticated annual sunflower and its wild relatives, Theoretical and applied genetics, vol. 95, no. 4, pp. 532-545, 1997.
R. G. Percy and Wendel, J. F., Allozyme evidence for the origin and diversification of Gossypium barbadense L., Theoretical and Applied Genetics, vol. 79, no. 4, pp. 529-542, 1990.
J. F. Wendel and Percy, R. G., Allozyme diversity and introgression in the Galapagos Islands endemic Gossypium darwinii and its relationship to continental G. barbadense, Biochemical Systematics and Ecology, vol. 18, no. 7, pp. 517-528, 1990.
K. L. Adams and Wendel, J. F., Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids, Genetics, vol. 171, no. 4, pp. 2139-2142, 2005.
J. F. Wendel and Doyle, J., 7 Polyploidy and evolution in plants, Plant diversity and evolution: genotypic and phenotypic variation in higher plants, p. 97, 2005.