Publications

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2005
J. W. Raich and Mora, G., “Estimating root plus rhizosphere contributions to soil respiration in annual croplands”, Soil Science Society of America Journal, vol. 69, no. 3, pp. 634-639, 2005.
S. Shepherd and Debinski, D. M., “Evaluation of isolated and integrated prairie reconstructions as habitat for prairie butterflies”, Biological Conservation, vol. 126, no. 1, pp. 51-61, 2005.
K. F. Reeder, Debinski, D. M., and Danielson, B. J., “Factors affecting butterfly use of filter strips in Midwestern USA”, Agriculture, ecosystems & environment, vol. 109, no. 1, pp. 40-47, 2005.
A. Salmon, Ainouche, M. L., and Wendel, J. F., “Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)”, Molecular ecology, vol. 14, no. 4, pp. 1163-1175, 2005.
J. Rong, Pierce, G. J., Waghmare, V. N., Rogers, C. J., Desai, A., Chee, P. W., O May, L., Gannaway, J. R., Wendel, J. F., and Wilkins, T. A., “Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton”, Theoretical and applied genetics, vol. 111, no. 6, pp. 1137-1146, 2005.
V. N. Waghmare, Rong, J., Rogers, C. J., Pierce, G. J., Wendel, J. F., and Paterson, A. H., “Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum”, Theoretical and Applied Genetics, vol. 111, no. 4, pp. 665-676, 2005.
J. F. Wendel and Adams, K. L., “Genome evolution and gene silencing in polyploid cotton”, REGNUM VEGETABILE, vol. 143, p. 271, 2005.
M. L. Ainouche and Wendel, J. F., “Genome technologies, polyploidy and evolution”, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
E. S. Krafsur, Cummings, M. A., Endsley, M. A., Marquez, J. G., and Nason, J. D., “Geographic differentiation in the house fly estimated by microsatellite and mitochondrial variation”, Journal of Heredity, vol. 96, no. 5, pp. 502-512, 2005.
J. M. Serb and Oakley, T. H., “Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology”, Bioessays, vol. 27, no. 11, pp. 1158-1166, 2005.
J. O. StiremanIII, Nason, J. D., and Heard, S. B., “Host‐associated genetic differentiation in phytophagous insects: general phenomenon or isolated exceptions? Evidence from a goldenrod‐insect community”, Evolution, vol. 59, no. 12, pp. 2573-2587, 2005.
J. S. Hawkins, Pleasants, J., and Wendel, J. F., “Identification of AFLP markers that discriminate between cultivated cotton and the Hawaiian island endemic, Gossypium tomentosumNuttall ex Seeman”, Genetic Resources and Crop Evolution, vol. 52, no. 8, pp. 1069-1078, 2005.
B. J. Wilsey, “Importance of species replication in understanding plant invasions into North American grasslands”, in Invasive Plants: Ecological and Agricultural Aspects, Birkhäuser Basel, 2005, pp. 61-75.
R. A. Rapp, Álvarez, I., and Wendel, J. F., “Molecular confirmation of the position of Gossypium trifurcatum Vollesen”, Genetic Resources and Crop Evolution, vol. 52, no. 6, pp. 749-753, 2005.
R. A. Rapp, Álvarez, I., and Wendel, J. F., “Molecular confirmation of the position of Gossypium trifurcatum Vollesen”, Genetic Resources and Crop Evolution, vol. 52, no. 6, pp. 749-753, 2005.
D. M. Debinski, “Montane Meadows as a Microcosm for Predicting Global Change”, University of Wyoming National Park Service Research Center Annual Report, vol. 29, no. 1, pp. 70-73, 2005.
D. C. Plachetzki, Serb, J. M., and Oakley, T. H., “New insights into the evolutionary history of photoreceptor cells”, Trends in ecology & evolution, vol. 20, no. 9, pp. 465-467, 2005.
K. L. Adams and Wendel, J. F., “Novel patterns of gene expression in polyploid plants”, TRENDS in Genetics, vol. 21, no. 10, pp. 539-543, 2005.
M. Yoon Chung, Nason, J. D., and Chung, M. Gi, “Patterns of hybridization and population genetic structure in the terrestrial orchids Liparis kumokiri and Liparis makinoana (Orchidaceae) in sympatric populations”, Molecular Ecology, vol. 14, no. 14, pp. 4389-4402, 2005.
W. H Polley, Derner, J. D., and Wilsey, B. J., “Patterns of plant species diversity in remnant and restored tallgrass prairies”, Restoration Ecology, vol. 13, no. 3, pp. 480-487, 2005.
D. C. Campbell, Serb, J. M., Buhay, J. E., Roe, K. J., Minton, R. L., and Lydeard, C., “Phylogeny of North American amblemines (Bivalvia, Unionoida): prodigious polyphyly proves pervasive across genera”, Invertebrate Biology, vol. 124, no. 2, pp. 131-164, 2005.
I. Álvarez, Cronn, R., and Wendel, J. F., “Phylogeny of the New World diploid cottons (Gossypium L., Malvaceae) based on sequences of three low-copy nuclear genes”, Plant Systematics and Evolution, vol. 252, no. 3-4, pp. 199-214, 2005.
K. L. Adams and Wendel, J. F., “Polyploidy and genome evolution in plants”, Current opinion in plant biology, vol. 8, no. 2, pp. 135-141, 2005.
L. L. Hinze, Kresovich, S., Nason, J. D., and Lamkey, K. R., “Population genetic diversity in a maize reciprocal recurrent selection program”, Crop science, vol. 45, no. 6, pp. 2435-2442, 2005.
B. J. Wilsey, Martin, L. M., and H Polley, W., “Predicting Plant Extinction Based on Species‐Area Curves in Prairie Fragments with High Beta Richness”, Conservation Biology, vol. 19, no. 6, pp. 1835-1841, 2005.
S. Shepherd and Debinski, D. M., “Reintroduction of Regal Fritillary (Speyeria idalia)”, Ecological Restoration, vol. 23, no. 4, 2005.
B. J. Wilsey, Chalcraft, D. R., Bowles, C. M., and Willig, M. R., “Relationships among indices suggest that richness is an incomplete surrogate for grassland biodiversity”, Ecology, vol. 86, no. 5, pp. 1178-1184, 2005.
D. M. Debinski, VanNimwegen, R. E., and Jakubauskas, M. E., “Remotely Sensed Mountain Meadows”, Bulletin of the Ecological Society of America, vol. 86, no. 3, pp. 127-127, 2005.
M. Y. Chung, Nason, J. D., and Chung, M. G., “Spatial genetic structure in populations of the terrestrial orchid Orchis cyclochila (Orchidaceae)”, Plant Systematics and Evolution, vol. 254, no. 3-4, pp. 209-219, 2005.
2004
J. Rong, Abbey, C., Bowers, J. E., Brubaker, C. L., Chang, C., Chee, P. W., Delmonte, T. A., Ding, X., Garza, J. J., and Marler, B. S., “A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium)”, Genetics, vol. 166, no. 1, pp. 389-417, 2004.
M. V. Santelmann, White, D., Freemark, K., Nassauer, J. Iverson, Eilers, J. M., Vache, K. B., Danielson, B. J., Corry, R. C., Clark, M. E., and Polasky, S. T. E. P. H. E. N., “Assessing alternative futures for agriculture in Iowa, USA”, Landscape ecology, vol. 19, no. 4, pp. 357-374, 2004.
J. C. Su, Debinski, D. M., Jakubauskas, M. E., and Kindscher, K., “Beyond species richness: Community similarity as a measure of cross‐taxon congruence for coarse‐filter conservation”, Conservation Biology, vol. 18, no. 1, pp. 167-173, 2004.
D. C. Adams, “Character displacement via aggressive interference in Appalachian salamanders”, Ecology, vol. 85, no. 10, pp. 2664-2670, 2004.
R. Cronn and Wendel, J. F., “Cryptic trysts, genomic mergers, and plant speciation”, New Phytologist, vol. 161, no. 1, pp. 133-142, 2004.
K. L. Adams and Wendel, J. F., “Exploring the genomic mysteries of polyploidy in cotton”, Biological Journal of the Linnean Society, vol. 82, no. 4, pp. 573-581, 2004.
D. Kassam, Adams, D. C., and Yamaoka, K., “Functional significance of variation in trophic morphology within feeding microhabitat-differentiated cichlid species in Lake Malawi”, Animal biology, vol. 54, no. 1, pp. 77-90, 2004.
N. Valenzuela, Adams, D. C., Bowden, R. M., Gauger, A. C., and Douglas, M. E., “Geometric morphometric sex estimation for hatchling turtles: a powerful alternative for detecting subtle sexual shape dimorphism”, Copeia, vol. 2004, no. 4, pp. 735-742, 2004.
D. C. Adams, F Rohlf, J., and Slice, D. E., “Geometric morphometrics: ten years of progress following the ‘revolution’”, Italian Journal of Zoology, vol. 71, no. 1, pp. 5-16, 2004.
M. Yoon Chung, Nason, J. D., and Chung, M. Gi, “Implications of clonal structure for effective population size and genetic drift in a rare terrestrial orchid, Cremastra appendiculata”, Conservation Biology, vol. 18, no. 6, pp. 1515-1524, 2004.
C. E. Grover, Kim, H. R., Wing, R. A., Paterson, A. H., and Wendel, J. F., “Incongruent patterns of local and global genome size evolution in cotton”, Genome research, vol. 14, no. 8, pp. 1474-1482, 2004.
J. Dewoody, Nason, J. D., and Smith, M., “Inferring demographic processes from the genetic structure of a metapopulation of Boltonia decurrens (Asteraceae)”, Conservation Genetics, vol. 5, no. 5, pp. 603-617, 2004.
A. Loy, Corti, M., Adams, D. C., Slice, D. E., and F Rohlf, J., “Introduction to the proceedings of the Rome 2002 Geometric Morphometrics workshop. Homage to Leslie F. Marcus”, 2004.
R. L. Small, Cronn, R. C., and Wendel, J. F., “LAS Johnson Review No. 2. Use of nuclear genes for phylogeny reconstruction in plants”, Australian Systematic Botany, vol. 17, no. 2, pp. 145-170, 2004.
J. Tews, Moloney, K., and Jeltsch, F., “Modeling seed dispersal in a variable environment: a case study of the fleshy-fruited savanna shrub Grewia flava”, Ecological Modelling, vol. 175, no. 1, pp. 65-76, 2004.
R. E. VanNimwegen and Debinski, D. M., “Nest Success of Yellow Warblers in Willow Habitats: The Role of Surface Water and Snakes”, University of Wyoming National Park Service Research Center Annual Report, vol. 28, no. 1, pp. 53-57, 2004.
K. L. Adams, Percifield, R., and Wendel, J. F., “Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid”, Genetics, vol. 168, no. 4, pp. 2217-2226, 2004.
L. H. Rieseberg and Wendel, J. F., “Plant speciation–rise of the poor cousins”, New Phytologist, vol. 161, no. 1, pp. 3-8, 2004.
R. J. Dyer and Nason, J. D., “Population graphs: the graph theoretic shape of genetic structure”, Molecular Ecology, vol. 13, no. 7, pp. 1713-1727, 2004.
, “Proceedings of the Rome Geometric Morphometric Workshop. Homage to Leslie F. Marcus”, in Special Publication of the Italian Journal of Zoology, vol. 71, no. 1, Mucchi Editore, 2004, pp. 1-88.
B. J. Wilsey and H Polley, W., “Realistically low species evenness does not alter grassland species-richness-productivity relationships”, Ecology, vol. 85, no. 10, pp. 2693-2700, 2004.

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