Publications

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Journal Article
C. L. Brubaker, Bourland, F. M., and Wendel, J. F., “The origin and domestication of cotton”, Cotton: Origin, history, technology, and production. John Wiley & Sons, New York, pp. 3-31, 1999.
J. Doebley, Wendel, J. F., Smith, J. S. C., Stuber, C. W., and Goodman, M. M., “The origin of cornbelt maize: the isozyme evidence”, Economic Botany, vol. 42, no. 1, pp. 120-131, 1988.
K. Halverson, Heard, S. B., Nason, J. D., and Stireman, J. O., “Origins, distribution, and local co-occurrence of polyploid cytotypes in Solidago altissima (Asteraceae)”, American Journal of Botany, vol. 95, no. 1, pp. 50-58, 2008.
D. C. Adams and Otárola-Castillo, E., “Package ‘geomorph’: Geometric morphometric analysis of 2d/3d landmark data”, R package version, vol. 1, 2012.
B. F. M. Olechnowski, Debinski, D. M., Drobney, P., Viste-Sparkman, K., and Reed, W. T., “A paper accepted for publication in Ecological Restoration”, Brian Frederick Olechnowski, p. 40, 2009.
B. F. M. Olechnowski and Debinski, D. M., “A paper published in the Wilson Journal of Ornithology”, Brian Frederick Olechnowski, p. 12, 2009.
B. F. M. Olechnowski, Debinski, D. M., and Harms, T. M., “A paper to be submitted to Ecological Restoration”, Brian Frederick Olechnowski, p. 70, 2009.
B. F. M. Olechnowski, VanNimwegen, R. E., Debinski, D. M., and Reed, W. T., “A paper to be submitted to the Journal of Field Ornithology”, Brian Frederick Olechnowski, p. 97, 2009.
R. Hovav, Chaudhary, B., Udall, J. A., Flagel, L., and Wendel, J. F., “Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton”, Genetics, vol. 179, no. 3, pp. 1725-1733, 2008.
D. C. Adams, “Parallel evolution of character displacement driven by competitive selection in terrestrial salamanders”, BMC Evolutionary Biology, vol. 10, no. 1, p. 72, 2010.
B. Chaudhary, Hovav, R., Flagel, L., Mittler, R., and Wendel, J. F., “Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium)”, Bmc Genomics, vol. 10, no. 1, p. 378, 2009.
Y. Bao, Hu, G., Flagel, L. E., Salmon, A., Bezanilla, M., Paterson, A. H., Wang, Z., and Wendel, J. F., “Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium)”, Proceedings of the National Academy of Sciences, vol. 108, no. 52, pp. 21152-21157, 2011.
M. R. Woodhouse and Hufford, M. B., “Parallelism and convergence in post-domestication adaptation in cereal grasses”, Philosophical Transactions of the Royal Society B, vol. 374, no. 1777, p. 20180245, 2019.
D. C. Adams and Rosenberg, M. S., “Partial warps, phylogeny, and ontogeny: a comment on Fink and Zelditch (1995)”, Systematic Biology, pp. 168-173, 1998.
R. Hovav, Udall, J. A., Chaudhary, B., Rapp, R., Flagel, L., and Wendel, J. F., “Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant”, Proceedings of the National Academy of Sciences, vol. 105, no. 16, pp. 6191-6195, 2008.
J. D. Nason, E Herre, A., and Hamrick, J. L., “Paternity analysis of the breeding structure of strangler fig populations: evidence for substantial long-distance wasp dispersal”, Journal of Biogeography, pp. 501-512, 1996.
K. A. Moloney, Levin, S. A., Chiariello, N. R., and Buttel, L., “Pattern and scale in a serpentine grassland”, Theoretical Population Biology, vol. 41, no. 3, pp. 257-276, 1992.
N. Valenzuela, Adams, D. C., and Janzen, F. J., “Pattern does not equal process: exactly when is sex environmentally determined?”, The American Naturalist, vol. 161, no. 4, pp. 676-683, 2003.
J. D. Nason, Ellstrand, N. C., and Arnold, M. L., “Patterns of hybridization and introgression in populations of oaks, manzanitas, and irises”, American Journal of Botany, pp. 101-111, 1992.
M. Yoon Chung, Nason, J. D., and Chung, M. Gi, “Patterns of hybridization and population genetic structure in the terrestrial orchids Liparis kumokiri and Liparis makinoana (Orchidaceae) in sympatric populations”, Molecular Ecology, vol. 14, no. 14, pp. 4389-4402, 2005.
A. L. Toth, Sumner, S., and Jeanne, R. L., “Patterns of longevity across a sociality gradient in vespid wasps”, Current Opinion in Insect Science, 2016.
W. H Polley, Derner, J. D., and Wilsey, B. J., “Patterns of plant species diversity in remnant and restored tallgrass prairies”, Restoration Ecology, vol. 13, no. 3, pp. 480-487, 2005.
R. Cronn, Cedroni, M., Haselkorn, T., Grover, C., and Wendel, J. F., “PCR-mediated recombination in amplification products derived from polyploid cotton”, Theoretical and Applied Genetics, vol. 104, no. 2-3, pp. 482-489, 2002.
G. R. Almany, De Arruda, M. P., Arthofer, W., Atallah, Z. K., Beissinger, S. R., Berumen, M. L., Bogdanowicz, S. M., Brown, S. D., Bruford, M. W., and Burdine, C., “Permanent genetic resources added to molecular ecology resources database 1 May 2009–31 July 2009”, Molecular Ecology Resources, vol. 9, no. 6, pp. 1460-1466, 2009.
D. C. Adams and Collyer, M. L., “Permutation tests for phylogenetic comparative analyses of high‐dimensional shape data: What you shuffle matters”, Evolution, vol. 69, no. 3, pp. 823-829, 2015.
S. Renny-Byfield, Gong, L., Gallagher, J. P., and Wendel, J. F., “Persistence of Subgenomes in Paleopolyploid Cotton after 60 My of Evolution”, Molecular biology and evolution, vol. 32, no. 4, pp. 1063-1071, 2015.
C. A. Phillips, Uzzell, T., Spolsky, C. M., Serb, J. M., Szafoni, R. E., and Pollowy, T. R., “Persistent high levels of tetraploidy in salamanders of the Ambystoma jeffersonianum complex”, Journal of Herpetology, pp. 530-535, 1997.
R. Gabor, Hall, S., Eiriksson, D., Jameel, Y., Millington, M., Stout, T., Barnes, M., Gelderloos, A., Tennant, H., and Bowen, G., “Persistent urban impacts on surface waterPersistent urban impacts on surface water quality via impacted groundwater in Red Butte Creek”, 2017.
R. S. Gabor, Hall, S. J., Eiriksson, D., Jameel, Y., Millington, M., Stout, T., Barnes, M. L., Gelderloos, A., Tennant, H., and Bowen, G. J., “Persistent urban influence on surface water quality via impacted groundwater”, Environmental Science & Technology, 2017.
D. S. Senchina, Flagel, L. E., Wendel, J. F., and Kohut, M. L., “Phenetic comparison of sevenEchinacea species based on immunomodulatory characteristics”, Economic botany, vol. 60, no. 3, pp. 205-211, 2006.
M. L. Collyer, Stockwell, C. A., Adams, D. C., and M Reiser, H., “Phenotypic plasticity and contemporary evolution in introduced populations: evidence from translocated populations of white sands pupfish (Cyrpinodon tularosa)”, Ecological Research, vol. 22, no. 6, pp. 902-910, 2007.
J. Hollander, Collyer, M. L., Adams, D. C., and Johannesson, K., “Phenotypic plasticity in two marine snails: constraints superseding life history”, Journal of evolutionary biology, vol. 19, no. 6, pp. 1861-1872, 2006.
Y. Jin Chun, Collyer, M. L., Moloney, K. A., and Nason, J. D., “Phenotypic plasticity of native vs. invasive purple loosestrife: a two-state multivariate approach”, Ecology, vol. 88, no. 6, pp. 1499-1512, 2007.
C. Edge, Rollinson, N., Brooks, R., Congdon, J., Iverson, J., Janzen, F., and Litzgus, J., “Phenotypic plasticity of nest timing in a post-glacial landscape: how do reptiles adapt to seasonal time constraints?”, Ecology, 2016.
M. Lloyd Collyer and Adams, D. C., “Phenotypic trajectory analysis: comparison of shape change patterns in evolution and ecology”, Hystrix, the Italian Journal of Mammalogy, vol. 24, no. 1, pp. 75-83, 2013.
C. E. Grover, Yu, Y., Wing, R. A., Paterson, A. H., and Wendel, J. F., “A phylogenetic analysis of indel dynamics in the cotton genus”, Molecular Biology and Evolution, vol. 25, no. 7, pp. 1415-1428, 2008.
D. C. Adams and Jackson, J. F., “A phylogenetic analysis of the southern pines (Pinus subsect. Australes Loudon): biogeographical and ecological implications”, PROCEEDINGS-BIOLOGICAL SOCIETY OF WASHINGTON, vol. 110, pp. 681-692, 1997.
D. C. Adams and Collyer, M. L., “Phylogenetic anova: group‐clade aggregation, biological challenges, and a refined permutation procedure”, Evolution, 2018.
D. C. Adams and Nason, J. D., “A phylogenetic comparative method for evaluating trait coevolution across two phylogenies for sets of interacting species”, Evolution, 2017.
J. M. Serb, Sherratt, E., Alejandrino, A., and Adams, D. C., “Phylogenetic convergence and multiple shell shape optima for gliding scallops (Bivalvia: Pectinidae)”, Journal of Evolutionary Biology, 2017.
T. Bureau, Hawkins, J. S., Hu, G., Rapp, R. A., Grafenberg, J. L., and Wendel, J. F., “Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium”, Genome, vol. 51, no. 1, pp. 11-18, 2007.
L. Attigala, Wysocki, W. P., Duvall, M. R., and Clark, L. G., “Phylogenetic estimation and morphological evolution of Arundinarieae (Bambusoideae: Poaceae) based on plastome phylogenomic analysis”, Molecular Phylogenetics and Evolution, 2016.
C. Grover, Hawkins, J., and Wendel, J. F., “Phylogenetic insights into the pace and pattern of plant genome size evolution”, 2008.
D. C. Adams, “Phylogenetic meta‐analysis”, Evolution, vol. 62, no. 3, pp. 567-572, 2008.
L. E. Flagel, Rapp, R. A., Grover, C. E., Widrlechner, M. P., Hawkins, J., Grafenberg, J. L., Álvarez, I., Chung, G. Young, and Wendel, J. F., “Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea”, American journal of botany, vol. 95, no. 6, pp. 756-765, 2008.
S. Hartmann, Nason, J. D., and Bhattacharya, D., “Phylogenetic origins of Lophocereus (Cactaceae) and the senita cactus–senita moth pollination mutualism”, American Journal of Botany, vol. 89, no. 7, pp. 1085-1092, 2002.
C. P. Ceballos, Adams, D. C., Iverson, J. B., and Valenzuela, N., “Phylogenetic patterns of sexual size dimorphism in turtles and their implications for Rensch’s rule”, Evolutionary Biology, vol. 40, no. 2, pp. 194-208, 2013.
A. Schnabel, McDonel, P. E., and Wendel, J. F., “Phylogenetic relationships in Gleditsia (Leguminosae) based on ITS sequences”, American journal of botany, vol. 90, no. 2, pp. 310-320, 2003.
L. Betancur, Singh, B., Rapp, R. A., Wendel, J. F., M Marks, D., Roberts, A. W., and Haigler, C. H., “Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber”, Journal of integrative plant biology, vol. 52, no. 2, pp. 205-220, 2010.
J. F. Wendel and Albert, V. A., “Phylogenetics of the cotton genus (Gossypium): character-state weighted parsimony analysis of chloroplast-DNA restriction site data and its systematic and biogeographic implications”, Systematic Botany, pp. 115-143, 1992.

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