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D. D. Houston, R Evans, P., and Shiozawa, D. K., Pluvial Drainage Patterns and Holocene Desiccation Influenced the Genetic Architecture of Relict Dace, Relictus solitarius (Teleostei: Cyprinidae), PloS one, vol. 10, no. 9, p. e0138433, 2015.
E. Ann Stacy, Hamrick, J. L., Nason, J. D., Hubbell, S. P., Foster, R. B., and Condit, R., Pollen dispersal in low-density populations of three neotropical tree species, American Naturalist, pp. 275-298, 1996.
B. Liu, Brubaker, C. L., Mergeai, G., Cronn, R. C., and Wendel, J. F., Polyploid formation in cotton is not accompanied by rapid genomic changes, Genome, vol. 44, no. 3, pp. 321-330, 2001.
M. L. Ainouche and Wendel, J. F., Polyploid speciation and genome evolution: Lessons from recent allopolyploids, in Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life, Springer International Publishing, 2014, pp. 87-113.
J. A. Udall and Wendel, J. F., Polyploidy and crop improvement, Crop Science, vol. 46, no. Supplement_1, p. S-3-S-14, 2006.
K. L. Adams and Wendel, J. F., Polyploidy and genome evolution in plants, Current opinion in plant biology, vol. 8, no. 2, pp. 135-141, 2005.
J. F. Wendel and Cronn, R. C., Polyploidy and the evolutionary history of cotton, Advances in agronomy, vol. 78, pp. 139-186, 2003.
T. Wiegand, Moloney, K. A., and Milton, S. J., Population dynamics, disturbance, and pattern evolution: identifying the fundamental scales of organization in a model ecosystem, The American Naturalist, vol. 152, no. 3, pp. 321-337, 1998.
L. L. Hinze, Kresovich, S., Nason, J. D., and Lamkey, K. R., Population genetic diversity in a maize reciprocal recurrent selection program, Crop science, vol. 45, no. 6, pp. 2435-2442, 2005.
A. Sethuraman, Janzen, F. J., and Obrycki, J., Population genetics of the predatory lady beetle Hippodamia convergens, Biological Control, vol. 84, pp. 1-10, 2015.
R. J. Dyer and Nason, J. D., Population graphs: the graph theoretic shape of genetic structure, Molecular Ecology, vol. 13, no. 7, pp. 1713-1727, 2004.
A. P. Kuester, Jones, R. W., Sappington, T. W., Kim, K. Seok, Barr, N. B., Roehrdanz, R. L., Senechal, P., and Nason, J. D., Population structure and genetic diversity of the boll weevil (Coleoptera: Curculionidae) on Gossypium in North America, Annals of the Entomological Society of America, vol. 105, no. 6, pp. 902-916, 2012.
D. C. Adams, A Possible Case of Character Displacement, The Biology of Plethodontid Salamanders, p. 383, 2000.
M. Bohlke and Wendel, J. F., A possible hybrid in the genus Hieracium., 1976.
T. J. Hovick, Miller, J. R., Koford, R. R., Engle, D. M., and Debinski, D. M., Postfledging survival of grasshopper sparrows in grasslands managed with fire and grazing, The Condor, vol. 113, no. 2, pp. 429-437, 2011.
J. W. Raich, Rastetter, E. B., Melillo, J. M., Kicklighter, D. W., Steudler, P. A., Peterson, B. J., Grace, A. L., Moore, III, B., and Vorosmarty, C. J., Potential net primary productivity in South America: Application of a global model, Ecol. Appl, vol. 1, pp. 399-429, 1991.
S. Salvidio, Crovetto, F., and Adams, D. C., Potential rapid evolution of foot morphology in Italian plethodontid salamanders (Hydromantes strinatii) following the colonization of an artificial cave, Journal of Evolutionary Biology, 2015.
S. Salvidio, Crovetto, F., and Adams, D. C., Potential rapid evolution of foot morphology in Italian plethodontid salamanders (Hydromantes strinatii) following the colonization of an artificial cave, Journal of evolutionary biology, 2015.
A. Lorant, Perdersen, S., Holst, I., Hufford, M. B., Winter, K., Piperno, D., and Ross-Ibarra, J., The Potential Role of Genetic Assimilation during Maize Domestication, bioRxiv, p. 105940, 2017.
J. M. Orlofske, Ohnesorg, W. J., and Debinski, D. M., Potential terrestrial arthropod indicators for tallgrass prairie restoration in Iowa, Ecological Restoration, vol. 28, no. 3, pp. 250-253, 2010.
E. K. Moody and Lozano‐Vilano, Mde Lourdes, Predation drives morphological convergence in the Gambusia panuco species group among lotic and lentic habitats, Journal of evolutionary biology, 2017.
T. Patrick Lyons, Miller, J. R., Debinski, D. M., and Engle, D. M., Predator identity influences the effect of habitat management on nest predation, Ecological Applications, 2015.
A. C. Kraemer and Adams, D. C., Predator perception of Batesian mimicry and conspicuousness in a salamander, Evolution, vol. 68, no. 4, pp. 1197-1206, 2014.
C. Mazancourt, Isbell, F., Larocque, A., Berendse, F., Luca, E., Grace, J. B., Haegeman, B., H Polley, W., Roscher, C., and Schmid, B., Predicting ecosystem stability from community composition and biodiversity, Ecology Letters, vol. 16, no. 5, pp. 617-625, 2013.
B. J. Wilsey, Martin, L. M., and H Polley, W., Predicting Plant Extinction Based on Species‐Area Curves in Prairie Fragments with High Beta Richness, Conservation Biology, vol. 19, no. 6, pp. 1835-1841, 2005.
E. L. Mudrak, Schafer, J. L., Fuentes-Ramirez, A., Holzapfel, C., and Moloney, K. A., Predictive modeling of spatial patterns of soil nutrients related to fertility islands, Landscape ecology, vol. 29, no. 3, pp. 491-505, 2014.
J. W. Raich and Turner, I. M., A preliminary list of the tree, shrub, palm and pandan species of the Pantai Acheh Forest Reserve, Penang, Malayan Nat, vol. 43, no. 3, pp. 23-28, 1990.
J. W. Raich, Russell, A. E., and Vitousek, P. M., Primary productivity and ecosystem development along an elevational gradient on Mauna Loa, Hawai'i, Ecology, vol. 78, no. 3, pp. 707-721, 1997.
, Proceedings of the Rome Geometric Morphometric Workshop. Homage to Leslie F. Marcus, in Special Publication of the Italian Journal of Zoology, vol. 71, no. 1, Mucchi Editore, 2004, pp. 1-88.
B. J. Wilsey, Productivity and subordinate species response to dominant grass species and seed source during restoration, Restoration Ecology, vol. 18, no. 5, pp. 628-637, 2010.
G. Hu, Koh, J., Yoo, M. ‐J., Grupp, K., Chen, S., and Wendel, J. F., Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense, New Phytologist, vol. 200, no. 2, pp. 570-582, 2013.
G. Hu, Koh, J., Yoo, M. - J., Pathak, D., Chen, S., and Wendel, J. F., Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.), Planta, vol. 240, no. 6, pp. 1237-1251, 2014.
R. Literman, Burrett, A., Bista, B., and Valenzuela, N., Putative Independent Evolutionary Reversals from Genotypic to Temperature-Dependent Sex Determination are Associated with Accelerated Evolution of Sex-Determining Genes in Turtles, Journal of Molecular Evolution, pp. 1-16, 2017.
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D. C. Adams, Quantifying and comparing phylogenetic evolutionary rates for shape and other high-dimensional phenotypic data, Systematic biology, p. syt105, 2013.
D. C. Adams and Cerney, M. M., Quantifying biomechanical motion using Procrustes motion analysis, Journal of biomechanics, vol. 40, no. 2, pp. 437-444, 2007.
D. Debinski, Quantifying Early Indicators of Global Climate Change, University of Wyoming National Park Service Research Center Annual Report, vol. 30, no. 1, pp. 97-99, 2006.
M. E. Dornbush, Isenhart, T. M., and Raich, J. W., Quantifying fine-root decomposition: an alternative to buried litterbags, Ecology, vol. 83, no. 11, pp. 2985-2990, 2002.
D. M. Debinski, VanNimwegen, R. E., and Jakubauskas, M. E., Quantifying relationships between bird and butterfly community shifts and environmental change, Ecological Applications, vol. 16, no. 1, pp. 380-393, 2006.
T. S. Mitchell, Janzen, F. J., and Warner, D. A., Quantifying the effects of embryonic phenotypic plasticity on adult phenotypes in reptiles: A review of current knowledge and major gaps, Journal of Experimental Zoology Part A: Ecological and Integrative Physiology, 2018.
L. C. Jesse, Nason, J. D., Obrycki, J. J., and Moloney, K. A., Quantifying the levels of sexual reproduction and clonal spread in the invasive plant, Rosa multiflora, Biological invasions, vol. 12, no. 6, pp. 1847-1854, 2010.
D. C. Adams, Quantitative genetics and evolution of head shape in Plethodon salamanders, Evolutionary Biology, vol. 38, no. 3, pp. 278-286, 2011.
E. M. Myers, Janzen, F. J., Adams, D. C., and Tucker, J. K., Quantitative genetics of plastron shape in slider turtles (Trachemys scripta), Evolution, vol. 60, no. 3, pp. 563-572, 2006.
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F. I. Isbell and Wilsey, B. J., Rapid biodiversity declines in both ungrazed and intensely grazed exotic grasslands, Plant Ecology, vol. 212, no. 10, pp. 1663-1674, 2011.
R. C. Cronn, Small, R. L., Haselkorn, T., and Wendel, J. F., Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes, American Journal of Botany, vol. 89, no. 4, pp. 707-725, 2002.
J. S. Hawkins, Proulx, S. R., Rapp, R. A., and Wendel, J. F., Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants, Proceedings of the National Academy of Sciences, vol. 106, no. 42, pp. 17811-17816, 2009.
J. S. Hawkins, Rapp, R. A., and Wendel, J. F., Rapid DNA loss as a counterbalance to retrotransposon proliferation in plant genome size evolution, Transposable Elements and Genome Size Dynamics in Gossypium, p. 61, 2007.
M. Tang, Chen, Z., Grover, C. E., Wang, Y., Li, S., Liu, G., Ma, Z., Wendel, J. F., and Hua, J., Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes, BMC Genomics, vol. 16, no. 1, p. 770, 2015.
A. H. Paterson, Brubaker, C. L., and Wendel, J. F., A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP or PCR analysis, Plant Molecular Biology Reporter, vol. 11, no. 2, pp. 122-127, 1993.
S. E. McGaugh, Bronikowski, A. M., Kuo, C. - H., Reding, D. M., Addis, E. A., Flagel, L. E., Janzen, F. J., and Schwartz, T. S., Rapid molecular evolution across amniotes of the IIS/TOR network, Proceedings of the National Academy of Sciences, p. 201419659, 2015.
J. Han, Masonbrink, R. E., Shan, W., Song, F., Zhang, J., Yu, W., Wang, K., Wu, Y., Tang, H., and Wendel, J. F., Rapid proliferationand nucleolar organizer targeting centromeric retrotransposonsin cotton, The Plant Journal, 2016.

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