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J. M. Serb, Porath-Krause, A. J., and Pairett, A. N., Uncovering a gene duplication of the photoreceptive protein, opsin, in scallops (bivalvia: Pectinidae), Integrative and comparative biology, p. ict063, 2013.
J. M. Serb, Buhay, J. E., and Lydeard, C., Molecular systematics of the North American freshwater bivalve genus Quadrula (Unionidae: Ambleminae) based on mitochondrial ND1 sequences, Molecular phylogenetics and evolution, vol. 28, no. 1, pp. 1-11, 2003.
J. M. Serb, Orr, M. C., and M Greenlee, H. West, Using evolutionary conserved modules in gene networks as a strategy to leverage high throughput gene expression queries, PloS one, vol. 5, no. 10.1371, 2010.
J. M. Serb, Krause-Porath, A. J., and Pairett, A. N., Uncovering patterns underlying the molecular evolution of non-visual photoreception in molluscs, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 54. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E189-E189, 2014.
J. M. Serb and Oakley, T. H., Reconciled phylogenetic trees as an emerging analytical framework for evolutionary developmental biology, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 44, no. 6. SOC INTEGRATIVE COMPARATIVE BIOLOGY 1313 DOLLEY MADISON BLVD, NO 402, MCLEAN, VA 22101 USA, pp. 639-639, 2004.
J. M. Serb, Discovery of genetically distinct sympatric lineages in the freshwater mussel Cyprogenia aberti (Bivalvia: Unionidae), Journal of Molluscan Studies, vol. 72, no. 4, pp. 425-434, 2006.
J. M. Serb, Zhang, X., and Greenlee, W. M. H., Applying Seed Networks to Genomic Data in an EvoDevo Context: A New Analysis Tool, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 52. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E157-E157, 2012.
J. M. Serb and Puslednik, L., Phylogenetic relationships of the pectinidae and the evolution of sexual reproductive modes: How important is dispersal life history?, JOURNAL OF SHELLFISH RESEARCH, vol. 26, no. 4. NATL SHELLFISHERIES ASSOC C/O DR. SANDRA E. SHUMWAY, UNIV CONNECTICUT, 1080 SHENNECOSSETT RD, GROTON, CT 06340 USA, pp. 1344-1345, 2007.
J. M. Serb, Sherratt, E., Alejandrino, A., and Adams, D. C., Phylogenetic convergence and multiple shell shape optima for gliding scallops (Bivalvia: Pectinidae), Journal of Evolutionary Biology, 2017.
J. M. Serb and Lydeard, C., Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): an examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca), Molecular Biology and Evolution, vol. 20, no. 11, pp. 1854-1866, 2003.
J. M. Serb and Harris, J. Lowrey, Taxonomic Status of the Endangered Winged Mapleleaf Quadrula Fragosa (Conrad, 1835) in Arkansas Using Mitochondrial DNA Sequence of the ND1 Gene: Final Report. 2003.
J. M. Serb, Omilian, A., and Oakley, T. H., Ancient duplication of Pax-6 homologs eyeless (ey) and twin of eyeless (toy), INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 43, no. 6. SOC INTEGRATIVE COMPARATIVE BIOLOGY 1313 DOLLEY MADISON BLVD, NO 402, MCLEAN, VA 22101 USA, pp. 992-992, 2003.
J. M. Serb and Eernisse, D. J., Charting evolution’s trajectory: using molluscan eye diversity to understand parallel and convergent evolution, Evolution: Education and Outreach, vol. 1, no. 4, pp. 439-447, 2008.
A. Sethuraman, Janzen, F. J., and Obrycki, J., Population genetics of the predatory lady beetle Hippodamia convergens, Biological Control, vol. 84, pp. 1-10, 2015.
C. - M. Shan, Shangguan, X. - X., Zhao, B., Zhang, X. - F., Chao, L. -men, Yang, C. - Q., Wang, L. - J., Zhu, H. - Y., Da Zeng, Y. -, and Guo, W. - Z., Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3, Nature communications, vol. 5, 2014.
S. Shepherd and Debinski, D. M., Reintroduction of Regal Fritillary (Speyeria idalia), Ecological Restoration, vol. 23, no. 4, 2005.
S. Shepherd and Debinski, D. M., Evaluation of isolated and integrated prairie reconstructions as habitat for prairie butterflies, Biological Conservation, vol. 126, no. 1, pp. 51-61, 2005.
E. Sherratt, Adams, D. C., and Serb, J. M., Macroevolution, phylomorphospace and directional evolution in recessing scallops, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 55. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E166-E166, 2015.
E. Sherratt, Alejandrino, A., Kraemer, A. C., Serb, J. M., and Adams, D. C., Trends in the sand: directional evolution in the shell shape of recessing scallops (Bivalvia: Pectinidae), Evolution, 2016.
J. A. Sherwood and Debinski, D. M., An Examination of Interannual Population Variation in Parnassius Clodius Butterflies, University of Wyoming National Park Service Research Center Annual Report, vol. 34, no. 1, pp. 121-123, 2011.
J. A. Sherwood, Debinski, D. M., Caragea, P. C., and Germino, M. J., Effects of experimentally reduced snowpack and passive warming on montane meadow plant phenology and floral resources, Ecosphere, vol. 8, no. 3, 2017.
J. A. Sherwood, Debinski, D. M., and Germino, M. J., Testing the Effects of Simulated Climate Change Effects Using Open Sided Warming Chambers, University of Wyoming National Park Service Research Center Annual Report, vol. 33, no. 1, pp. 147-153, 2011.
J. A. Sherwood and Debinski, D. M., An Examination of Reproductive Phenology with Implications for Understanding Climate Change Effects, University of Wyoming National Park Service Research Center Annual Report, vol. 32, no. 1, pp. 63-67, 2009.
M. Sieck, Ibisch, P. L., Moloney, K. A., and Jeltsch, F., Current models broadly neglect specific needs of biodiversity conservation in protected areas under climate change, BMC ecology, vol. 11, no. 1, p. 12, 2011.
A. Checinska Sielaff, H Polley, W., Fuentes-Ramirez, A., Hofmockel, K., and Wilsey, B. J., Mycorrhizal colonization and its relationship with plant performance differs between exotic and native grassland plant species, Biological Invasions, 2019.
R. L. Small and Wendel, J. F., Phylogeny, duplication, and intraspecific variation of Adh sequences in new world diploid cottons (Gossypium L., Malvaceae), Molecular Phylogenetics and Evolution, vol. 16, no. 1, pp. 73-84, 2000.
R. L. Small, Ryburn, J. A., and Wendel, J. F., Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.)., Molecular biology and evolution, vol. 16, no. 4, pp. 491-501, 1999.
R. L. Small and Wendel, J. F., Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium), Molecular biology and evolution, vol. 19, no. 5, pp. 597-607, 2002.
R. L. Small, Cronn, R. C., and Wendel, J. F., LAS Johnson Review No. 2. Use of nuclear genes for phylogeny reconstruction in plants, Australian Systematic Botany, vol. 17, no. 2, pp. 145-170, 2004.
R. L. Small and Wendel, J. F., Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium), Genetics, vol. 155, no. 4, pp. 1913-1926, 2000.
R. L. Small and Wendel, J. F., The mitochondrial genome of allotetraploid cotton (Gossypium L.)., The Journal of heredity, vol. 90, no. 1, pp. 251-253, 1998.
R. L. Small, Ryburn, J. A., Cronn, R. C., Seelanan, T., and Wendel, J. F., The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group, American Journal of Botany, vol. 85, no. 9, pp. 1301-1315, 1998.
D. G Smedley, Audino, J. A., Grula, C., Porath-Krause, A., Pairett, A. N., Alejandrino, A., Lacey, L., Masters, F., Duncan, P. F., and Strong, E. E., Molecular phylogeny of the Pectinoidea (Bivalvia) indicates Propeamussiidae to be a non-monophyletic family with one clade sister to the scallops (Pectinidae), Molecular Phylogenetics and Evolution, 2019.
S. J. Snodgrass and Hufford, M. B., Domestication Genomics: Untangling the Complex History of African Rice, Current Biology, vol. 28, no. 14, pp. R786-R788, 2018.
S. J. Snodgrass, Jareczek, J., and Wendel, J. F., An examination of nucleotypic effects in diploid and polyploid cotton, AoB Plants, p. plw082, 2016.
D. E. Soltis, Isozymes in plant biology. Springer Science & Business Media, 2012.
P. A. Soranno, Bissell, E. G., Cheruvelil, K. S., Christel, S. T., Collins, S. M., C Fergus, E., Filstrup, C. T., Lapierre, J. - F., Lottig, N. R., and Oliver, S. K., Building a multi-scaled geospatial temporal ecology database from disparate data sources: fostering open science and data reuse, GigaScience, vol. 4, no. 1, p. 28, 2015.
V. L. Sork, Nason, J., Campbell, D. R., and Fernandez, J. F., Landscape approaches to historical and contemporary gene flow in plants, Trends in Ecology & Evolution, vol. 14, no. 6, pp. 219-224, 1999.
A. M. Sparkman, Schwartz, T. S., Madden, J. A., Boyken, S. E., Ford, N. B., Serb, J. M., and Bronikowski, A. M., Rates of molecular evolution vary in vertebrates for insulin-like growth factor-1 (IGF-1), a pleiotropic locus that regulates life history traits, General and comparative endocrinology, vol. 178, no. 1, pp. 164-173, 2012.
A. M. Sparkman, Chism, K. R., Bronikowski, A. M., Brummett, L. J., Combrink, L. L., Davis, C. L., Holden, K. G., Kabey, N. M., and Miller, D. A. W., Use of field‐portable ultrasonography reveals differences in developmental phenology and maternal egg provisioning in two sympatric viviparous snakes, Ecology and Evolution, 2018.
D. I. Speiser, M Pankey, S., Zaharoff, A. K., Battelle, B. A., Bracken-Grissom, H. D., Breinholt, J. W., Bybee, S. M., Cronin, T. W., Garm, A., and Lindgren, A. R., Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms, BMC bioinformatics, vol. 15, no. 1, p. 350, 2014.
E. Ann Stacy, Hamrick, J. L., Nason, J. D., Hubbell, S. P., Foster, R. B., and Condit, R., Pollen dispersal in low-density populations of three neotropical tree species, American Naturalist, pp. 275-298, 1996.
M. A. Stanton, J Stewart, M. D., A Pervical, E., and Wendel, J. F., Morphological diversity and relationships in the A-genome cottons, Gossypium arboreum and G. herbaceum, Crop science, vol. 34, no. 2, pp. 519-527, 1994.
D. M. Stelly, Wendel, J. F., and Paterson, A. H., Dispersed Repetitive DNA Has Spread to New Genomes Since Polyploid Formation in Cotton Xin-ping Zhao, Yang Si, Robert E. Hanson, 2 Charles F. Crane, 2 H. James Price, 2, Genome Research, vol. 8, pp. 479-492, 1998.
J. McD. Stewart, Craven, L. A., Brubaker, C., and Wendel, J. F., Gossypium anapoides (Malvaceae), a new species from Western Australia, Novon, vol. 23, no. 4, pp. 447-451, 2015.
J. O. Stireman, Nason, J. D., Heard, S. B., and Seehawer, J. M., Cascading host-associated genetic differentiation in parasitoids of phytophagous insects, Proceedings of the Royal Society of London B: Biological Sciences, vol. 273, no. 1586, pp. 523-530, 2006.
J. O. StiremanIII, Nason, J. D., and Heard, S. B., Host‐associated genetic differentiation in phytophagous insects: general phenomenon or isolated exceptions? Evidence from a goldenrod‐insect community, Evolution, vol. 59, no. 12, pp. 2573-2587, 2005.
G. Stirling and Wilsey, B., Empirical relationships between species richness, evenness, and proportional diversity, The American Naturalist, vol. 158, no. 3, pp. 286-299, 2001.
M. S. Strickland, Keiser, A. D., and Bradford, M. A., Climate history shapes contemporary leaf litter decomposition, Biogeochemistry, vol. 122, no. 2-3, pp. 165-174, 2015.
C. W. Stuber, Edwards, M. D., and Wendel, J. F., Molecular marker-facilitated investigations of quantitative trait loci in maize. II. Factors influencing yield and its component traits, Crop Science, vol. 27, no. 4, pp. 639-648, 1987.

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