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A. Kaliontzopoulou, Carretero, M. A., and Adams, D. C., “Ecomorphological variation in male and female wall lizards and the macroevolution of sexual dimorphism in relation to habitat use”, Journal of evolutionary biology, vol. 28, no. 1, pp. 80-94, 2015.
A. E. Russell, Raich, J. W., and Vitousek, P. M., “The ecology of the climbing fern Dicranopteris linearis on windward Mauna Loa, Hawaii”, Journal of Ecology, vol. 86, no. 5, pp. 765-779, 1998.
T. Blankers, Adams, D. C., and Wiens, J. J., “Ecological radiation with limited morphological diversification in salamanders”, Journal of evolutionary biology, vol. 25, no. 4, pp. 634-646, 2012.
J. P. Silva Vieira, Schnadelbach, A. S., Hughes, F. Mendes, Jardim, J. G., Clark, L. G., and R De Oliveira, P., “Ecological niche modelling and genetic diversity of Anomochloa marantoidea (Poaceae): filling the gaps for conservation in the earliest-diverging grass subfamily”, Botanical Journal of the Linnean Society, 2019.
F. Piatscheck, Van Goor, J., Houston, D. D., and Nason, J. D., “Ecological factors associated with pre-dispersal predation of fig seeds and wasps by fig-specialist lepidopteran larvae”, Acta Oecologica, 2018.
R. C. Garrick, Nason, J. D., Fernández‐Manjarrés, J. F., and Dyer, R. J., “Ecological coassociations influence species' responses to past climatic change: an example from a Sonoran Desert bark beetle”, Molecular ecology, vol. 22, no. 12, pp. 3345-3361, 2013.
D. C. Adams and F Rohlf, J., “Ecological character displacement in Plethodon: biomechanical differences found from a geometric morphometric study”, Proceedings of the National Academy of Sciences, vol. 97, no. 8, pp. 4106-4111, 2000.
D. C. Adams, Ecological character displacement in Plethodon and methods for shape analysis of articulated structures. 1999.
Z. Yu, Lu, C., Cao, P., Tian, H., Hessl, A., and Pederson, N., “Earlier leaf-flushing suppressed ecosystem productivity by draining soil water in the Mongolian Plateau”, Agricultural and Forest Meteorology, vol. 250, pp. 1-8, 2018.
D
I. M. Turner, Raich, J. W., Gong, W. K., Ong, J. E., and Whitmore, T. C., “The dynamics of Pantai Acheh Forest Reserve: a synthesis of recent research”, Malayan Nature Journal, vol. 45, pp. 166-174, 1992.
K. L. Adams and Wendel, J. F., “Dynamics of duplicated gene expression in Polyploid Cotton”, Polyploid and hybrid genomics, pp. 187-194, 2013.
S. A. Levin, Moloney, K., Buttel, L., and Castillo-Chavez, C., “Dynamical models of ecosystems and epidemics”, Future generation computer systems, vol. 5, no. 2, pp. 265-274, 1989.
J. F. Wendel, Stuber, C. W., Goodman, M. M., and Beckett, J. B., “Duplicated plastid and triplicated cytosolic isozymes of triosephosphate isomerase in maize (Zea mays L.)”, Journal of Heredity, vol. 80, no. 3, pp. 218-228, 1989.
R. C. Cronn, Small, R. L., and Wendel, J. F., “Duplicated genes evolve independently after polyploid formation in cotton”, Proceedings of the National Academy of Sciences, vol. 96, no. 25, pp. 14406-14411, 1999.
J. F. Wendel, Stuber, C. W., Edwards, M. D., and Goodman, M. M., “Duplicated chromosome segments in maize (Zea mays L.): further evidence from hexokinase isozymes”, TAG Theoretical and Applied Genetics, vol. 72, no. 2, pp. 178-185, 1986.
L. Flagel, Udall, J., Nettleton, D., and Wendel, J. F., “Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution”, BMC biology, vol. 6, no. 1, p. 16, 2008.
L. E. Flagel, Wendel, J. F., and Udall, J. A., “Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton”, BMC genomics, vol. 13, no. 1, p. 302, 2012.
O. Fedrigo, Adams, D. C., and Naylor, G. J. P., “DRUIDS—Detection of regions with unexpected internal deviation from stationarity”, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, vol. 304, no. 2, pp. 119-128, 2005.
D. J Scasta, Engle, D. M., Talley, J. L., Weir, J. R., Fuhlendorf, S. D., and Debinski, D. M., “Drought Influences Control of Parasitic Flies of Cattle on Pastures Managed with Patch-Burn Grazing”, Rangeland Ecology & Management, 2015.
D. J Scasta, Engle, D. M., Talley, J. L., Weir, J. R., Fuhlendorf, S. D., and Debinski, D. M., “Drought influences control of parasitic flies of cattle on pastures managed with patch-burn grazing”, Rangeland Ecology & Management, vol. 68, no. 3, pp. 290-297, 2015.
O. Panaud, Jackson, S. A., and Wendel, J. F., “Drivers and dynamics of diversity in plant genomes”, New Phytologist, vol. 202, no. 1, pp. 15-18, 2014.
L. Lin, Pierce, G. J., Bowers, J. E., Estill, J. C., Compton, R. O., Rainville, L. K., Kim, C., Lemke, C., Rong, J., and Tang, H., “A draft physical map of a D-genome cotton species (Gossypium raimondii)”, BMC genomics, vol. 11, no. 1, p. 395, 2010.
S. Renny-Byfield and Wendel, J. F., “Doubling down on genomes: polyploidy and crop plants”, American journal of botany, vol. 101, no. 10, pp. 1711-1725, 2014.
W. H Polley, Wilsey, B. J., and Derner, J. D., “Dominant species constrain effects of species diversity on temporal variability in biomass production of tallgrass prairie”, Oikos, vol. 116, no. 12, pp. 2044-2052, 2007.
S. J. Snodgrass and Hufford, M. B., “Domestication Genomics: Untangling the Complex History of African Rice”, Current Biology, vol. 28, no. 14, pp. R786-R788, 2018.
K. C. Voves, Mitchell, T. S., and Janzen, F. J., “Does Natural Visual Camouflage Reduce Turtle Nest Predation?”, The American Midland Naturalist, vol. 176, no. 1, pp. 166-172, 2016.
W. R. Norris, Hemesath, L. M., Debinski, D. M., and Farrar, D. R., “Does bird community composition vary along a disturbance gradient in northeast Iowa, USA, forests?”, Natural Areas Journal, vol. 23, no. 3, pp. 262-273, 2003.
J. M. Refsnider, Reedy, A. M., Warner, D. A., and Janzen, F. J., “Do trade‐offs between predation pressures on females versus nests drive nest‐site choice in painted turtles?”, Biological Journal of the Linnean Society, 2015.
W. H Polley, Wilsey, B. J., and Derner, J. D., “Do species evenness and plant density influence the magnitude of selection and complementarity effects in annual plant species mixtures?”, Ecology Letters, vol. 6, no. 3, pp. 248-256, 2003.
T. L. Dickson, Hopwood, J. L., and Wilsey, B. J., “Do priority effects benefit invasive plants more than native plants? An experiment with six grassland species”, Biological Invasions, vol. 14, no. 12, pp. 2617-2624, 2012.
T. Escalona, Valenzuela, N., and Adams, D. C., “Do Local Environmental Factors and Lunar Cycle Influence Timing and Synchrony of Oviposition of a Turtle with Strict Nocturnal Nesting?”, Diversity, vol. 11, no. 5, p. 78, 2019.
F. J. Janzen, Delaney, D. M., Mitchell, T. S., and Warner, D. A., “Do covariances between maternal behavior and embryonic physiology drive sex-ratio evolution under environmental sex determination?”, Journal of Heredity, 2019.
S. J. Hall, Russell, A. E., and R A’lece, M., “Do corn-soybean rotations enhance decomposition of soil organic matter?”, Plant and Soil, pp. 1-16, 2019.
R. Whitkus, Doebley, J., and Wendel, J. F., “DNA-based markers in plants”, Nuclear DNA markers in systematics and evolution. Kluwer, Amsterdam, pp. 116-141, 1994.
F. I. Isbell, Losure, D. A., Yurkonis, K. A., and Wilsey, B. J., “Diversity–productivity relationships in two ecologically realistic rarity–extinction scenarios”, Oikos, vol. 117, no. 7, pp. 996-1005, 2008.
F. Colchero, Jones, O. R., Conde, D. A., Hodgson, D., Zajitschek, P., Schmidt, B. R., Malo, A. F., Alberts, S. C., Becker, P. H., and Bouwhuis, S., “The diversity of population responses to environmental change”, Ecology Letters, 2018.
L. Gutiérrez, Nason, J. D., and Jannink, J. - L., “Diversity and mega-targets of selection from the characterization of a barley collection”, Crop science, vol. 49, no. 2, pp. 483-497, 2009.
L. L. Hinze, Hulse-Kemp, A. M., Wilson, I. W., Zhu, Q. - H., Llewellyn, D. J., Taylor, J. M., Spriggs, A., Fang, D. D., Ulloa, M., and Burke, J. J., “Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array”, BMC Plant Biology, vol. 17, no. 1, p. 37, 2017.
V. D. Picasso, E Brummer, C., Liebman, M., Dixon, P. M., and Wilsey, B. J., “Diverse perennial crop mixtures sustain higher productivity over time based on ecological complementarity”, Renewable Agriculture and Food Systems, vol. 26, no. 04, pp. 317-327, 2011.
P. Bilinski, Han, Y., Hufford, M. B., Lorant, A., Zhang, P., Jiang, J., and Ross-Ibarra, J., “Diverse origins of high copy tandem repeats in grass genomes”, PeerJ Preprints, 2016.
Q. Pan, Wendel, J. F., and Fluhr, R., “Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes”, Journal of molecular evolution, vol. 50, no. 3, pp. 203-213, 2000.
D. C. Adams, “Divergence of trophic morphology and resource use among populations of Plethodon cinereus and P. hoffmani in Pennsylvania”, in The biology of Plethodontid salamanders, Springer US, 2000, pp. 383-394.
A. D. Keiser, Knoepp, J. D., and Bradford, M. A., “Disturbance decouples biogeochemical cycles across forests of the southeastern US”, Ecosystems, pp. 1-12, 2015.
L. Jesse, Collyer, M., Moloney, K., and Obrycki, J. J., “Distribution of Megastigmus aculeatus (Hymenoptera: Torymidae) and the levels of seed predation of Rosa multiflora (Rosaceae)”, Weed Biology and Management, vol. 13, no. 3, pp. 79-88, 2013.
J. F. Wendel and Parks, C. R., “Distorted segregation and linkage of alcohol dehydrogenase genes in Camellia japonica L.(Theacease)”, Biochemical genetics, vol. 22, no. 7-8, pp. 739-748, 1984.
X. P. Zhao, Si, Y., Hanson, R. E., Crane, C. F., Price, H. J., Stelly, D. M., Wendel, J. F., and Paterson, N. H., “Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton (vol 8, pg 479, 1998)”, GENOME RESEARCH, vol. 8, no. 6, pp. 682-682, 1998.
D. M. Stelly, Wendel, J. F., and Paterson, A. H., “Dispersed Repetitive DNA Has Spread to New Genomes Since Polyploid Formation in Cotton Xin-ping Zhao, Yang Si, Robert E. Hanson, 2 Charles F. Crane, 2 H. James Price, 2”, Genome Research, vol. 8, pp. 479-492, 1998.
X. -ping Zhao, Si, Y., Hanson, R. E., Crane, C. F., H Price, J., Stelly, D. M., Wendel, J. F., and Paterson, A. H., “Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton”, Genome Research, vol. 8, no. 5, pp. 479-492, 1998.
J. D. Nason, Aldrich, P. R., and Hamrick, J. L., “Dispersal and the dynamics of genetic structure in fragmented tropical tree populations”, Tropical Forest Remnants: Ecology Management and Conservation of Fragmented Communities. University of Chicago Press, Chicago, Illinois, pp. 304-320, 1997.
J. M. Serb, “Discovery of genetically distinct sympatric lineages in the freshwater mussel Cyprogenia aberti (Bivalvia: Unionidae)”, Journal of Molluscan Studies, vol. 72, no. 4, pp. 425-434, 2006.

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