Publications
“Epigenetic phenomena and the evolution of plant allopolyploids”, Molecular phylogenetics and evolution, vol. 29, no. 3, pp. 365-379, 2003.
, “Evolution and expression of MYB genes in diploid and polyploid cotton”, Plant molecular biology, vol. 51, no. 3, pp. 313-325, 2003.
, “Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing”, Proceedings of the National Academy of Sciences, vol. 100, no. 8, pp. 4649-4654, 2003.
, “Phylogenetic relationships in Gleditsia (Leguminosae) based on ITS sequences”, American journal of botany, vol. 90, no. 2, pp. 310-320, 2003.
, “Polyploidy and the evolutionary history of cotton”, Advances in agronomy, vol. 78, pp. 139-186, 2003.
, “Rate variation among nuclear genes and the age of polyploidy in Gossypium”, Molecular biology and evolution, vol. 20, no. 4, pp. 633-643, 2003.
, “Ribosomal ITS sequences and plant phylogenetic inference”, Molecular phylogenetics and evolution, vol. 29, no. 3, pp. 417-434, 2003.
, “Cryptic trysts, genomic mergers, and plant speciation”, New Phytologist, vol. 161, no. 1, pp. 133-142, 2004.
, “Exploring the genomic mysteries of polyploidy in cotton”, Biological Journal of the Linnean Society, vol. 82, no. 4, pp. 573-581, 2004.
, “Incongruent patterns of local and global genome size evolution in cotton”, Genome research, vol. 14, no. 8, pp. 1474-1482, 2004.
, “LAS Johnson Review No. 2. Use of nuclear genes for phylogeny reconstruction in plants”, Australian Systematic Botany, vol. 17, no. 2, pp. 145-170, 2004.
, “Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid”, Genetics, vol. 168, no. 4, pp. 2217-2226, 2004.
, “Plant speciation–rise of the poor cousins”, New Phytologist, vol. 161, no. 1, pp. 3-8, 2004.
, “Trade-offs among anti-herbivore resistance traits: insights from Gossypieae (Malvaceae)”, American Journal of Botany, vol. 91, no. 6, pp. 871-880, 2004.
, “553 Multievidence microarray mining”, Genetics, vol. 21, no. 10, pp. 533-582, 2005.
, “7 Polyploidy and evolution in plants”, Plant diversity and evolution: genotypic and phenotypic variation in higher plants, p. 97, 2005.
, “Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids”, Genetics, vol. 171, no. 4, pp. 2139-2142, 2005.
, “Epigenetic phenomena and the evolution of plant allopolyploids”, 中国生物学文摘, vol. 19, no. 4, pp. 8-22, 2005.
, “Epigenetics and plant evolution”, New Phytologist, vol. 168, no. 1, pp. 81-91, 2005.
, “Epigenetics and plant evolution.”, New Phytologist, vol. 168, no. 1, pp. 81-91, 2005.
, “Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)”, Molecular ecology, vol. 14, no. 4, pp. 1163-1175, 2005.
, “Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton”, Theoretical and applied genetics, vol. 111, no. 6, pp. 1137-1146, 2005.
, “Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum”, Theoretical and Applied Genetics, vol. 111, no. 4, pp. 665-676, 2005.
, “Genome evolution and gene silencing in polyploid cotton”, REGNUM VEGETABILE, vol. 143, p. 271, 2005.
, “Genome technologies, polyploidy and evolution”, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
, “Identification of AFLP markers that discriminate between cultivated cotton and the Hawaiian island endemic, Gossypium tomentosumNuttall ex Seeman”, Genetic Resources and Crop Evolution, vol. 52, no. 8, pp. 1069-1078, 2005.
, “Molecular confirmation of the position of Gossypium trifurcatum Vollesen”, Genetic Resources and Crop Evolution, vol. 52, no. 6, pp. 749-753, 2005.
, “Novel patterns of gene expression in polyploid plants”, TRENDS in Genetics, vol. 21, no. 10, pp. 539-543, 2005.
, “Phylogeny of the New World diploid cottons (Gossypium L., Malvaceae) based on sequences of three low-copy nuclear genes”, Plant Systematics and Evolution, vol. 252, no. 3-4, pp. 199-214, 2005.
, “Polyploidy and genome evolution in plants”, Current opinion in plant biology, vol. 8, no. 2, pp. 135-141, 2005.
, “Cryptic interspecific introgression and genetic differentiation within Gossypium aridum (Malvaceae) and its relatives”, Evolution, vol. 60, no. 3, pp. 505-517, 2006.
, “Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium”, Genome research, vol. 16, no. 10, pp. 1252-1261, 2006.
, “Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.)”, Journal of Heredity, vol. 97, no. 5, pp. 444-450, 2006.
, “A novel approach for characterizing expression levels of genes duplicated by polyploidy”, Genetics, vol. 173, no. 3, pp. 1823-1827, 2006.
, “Phenetic comparison of sevenEchinacea species based on immunomodulatory characteristics”, Economic botany, vol. 60, no. 3, pp. 205-211, 2006.
, “Polyploidy and crop improvement”, Crop Science, vol. 46, no. Supplement_1, p. S-3-S-14, 2006.
, “Evolutionary dynamics of Waxy and the origin of hexaploid Spartina species (Poaceae)”, Molecular phylogenetics and evolution, vol. 43, no. 3, pp. 1040-1055, 2007.
, “Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L.”, Planta medica, vol. 73, no. 15, p. 1614, 2007.
, “Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium)”, The Plant Journal, vol. 50, no. 6, pp. 995-1006, 2007.
, “Microcolinearity in the Allotetraploid Gossypium hirsutum”, Genome Exploitation: Data Mining the Genome, p. 231, 2007.
, “Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium”, Genome, vol. 51, no. 1, pp. 11-18, 2007.
, “Rapid DNA loss as a counterbalance to retrotransposon proliferation in plant genome size evolution”, Transposable Elements and Genome Size Dynamics in Gossypium, p. 61, 2007.
, “Tobacco genomes quickly go up in smoke”, New Phytologist, vol. 175, no. 4, pp. 599-602, 2007.
, “Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution”, BMC biology, vol. 6, no. 1, p. 16, 2008.
, “The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism”, PLoS Genet, vol. 4, no. 2, p. e25, 2008.
, “Evolutionary genetics of genome merger and doubling in plants”, Annual review of genetics, vol. 42, pp. 443-461, 2008.
, “Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense”, Evolution & development, vol. 10, no. 5, pp. 567-582, 2008.
, “A majority of cotton genes are expressed in single-celled fiber”, Planta, vol. 227, no. 2, pp. 319-329, 2008.
, “Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton”, Genetics, vol. 179, no. 3, pp. 1725-1733, 2008.
, “Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant”, Proceedings of the National Academy of Sciences, vol. 105, no. 16, pp. 6191-6195, 2008.
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