Publications

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R. J. A. Buggs, Wendel, J. F., Doyle, J. J., Soltis, D. E., Soltis, P. S., and Coate, J. E., “The legacy of diploid progenitors in allopolyploid gene expression patterns”, Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 369, no. 1648, p. 20130354, 2014.
J. E. Coate, Buggs, R. J. A., Wendel, J. F., Doyle, J. J., Soltis, D. E., and Soltis, P. S., “The legacy of diploid progenitors in allopolyploid gene”, 2014.
R. L. Small, Cronn, R. C., and Wendel, J. F., “LAS Johnson Review No. 2. Use of nuclear genes for phylogeny reconstruction in plants”, Australian Systematic Botany, vol. 17, no. 2, pp. 145-170, 2004.
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J. F. Wendel, “Jeans, Genes, and The Independent Domestications Of Cotton”, Plant and Animal Genome XXI Conference. Plant and Animal Genome, 2013.
J. F. Wendel, Flagel, L. E., and Adams, K. L., “Jeans, genes, and genomes: cotton as a model for studying polyploidy”, in Polyploidy and genome evolution, Springer Berlin Heidelberg, 2012, pp. 181-207.
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L. Huang, Millet, E., Rong, J., Wendel, J. F., Anikster, Y., Feldman, M., Sotirova, V., Shtereva, L., Zagorska, N., and Dimitrov, B., “ISRAEL JOURNAL OF LIBRARY PLANT SCIENCES jul o 7 2000 Vol. 47, NO. 4, 1^^ RB^ YUBRAH#. ISSN 0792-9978™***”, Israel Journal of Plant Sciences, vol. 47, p. 211, 1999.
J. F. Wendel, Cronn, R. C., Álvarez, I., Liu, B., Small, R. L., and Senchina, D. S., “Intron size and genome size in plants”, Molecular biology and evolution, vol. 19, no. 12, pp. 2346-2352, 2002.
L. H. Rieseberg and Wendel, J. F., “Introgression and its consequences in plants”, Hybrid zones and the evolutionary process, pp. 70-109, 1993.
B. Liu and Wendel, J. F., “Intersimple sequence repeat (ISSR) polymorphisms as a genetic marker system in cotton”, Molecular Ecology Notes, vol. 1, no. 3, pp. 205-208, 2001.
J. T. Page, Huynh, M. D., Liechty, Z. S., Grupp, K., Stelly, D., Hulse, A. M., Ashrafi, H., Van Deynze, A., Wendel, J. F., and Udall, J. A., “Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing”, G3: Genes| Genomes| Genetics, vol. 3, no. 10, pp. 1809-1818, 2013.
K. M. Butterworth, Adams, D. C., Horner, H. T., and Wendel, J. F., “Initiation and early development of fiber in wild and cultivated cotton”, International Journal of Plant Sciences, vol. 170, no. 5, pp. 561-574, 2009.
A. L. Keyte, Percifield, R., Liu, B., and Wendel, J. F., “Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.)”, Journal of Heredity, vol. 97, no. 5, pp. 444-450, 2006.
C. E. Grover, Kim, H. R., Wing, R. A., Paterson, A. H., and Wendel, J. F., “Incongruent patterns of local and global genome size evolution in cotton”, Genome research, vol. 14, no. 8, pp. 1474-1482, 2004.
J. S. Hawkins, Pleasants, J., and Wendel, J. F., “Identification of AFLP markers that discriminate between cultivated cotton and the Hawaiian island endemic, Gossypium tomentosumNuttall ex Seeman”, Genetic Resources and Crop Evolution, vol. 52, no. 8, pp. 1069-1078, 2005.
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K. Klier, Leoschke, M. J., and Wendel, J. F., “Hybridization and introgression in white and yellow ladyslipper orchids (Cypripedium candidum and C. pubescens)”, Journal of Heredity, vol. 82, no. 4, pp. 305-318, 1991.
A. Salmon, Flagel, L., Ying, B., Udall, J. A., and Wendel, J. F., “Homoeologous nonreciprocal recombination in polyploid cotton”, New Phytologist, vol. 186, no. 1, pp. 123-134, 2010.
M. J. Yoo, Szadkowski, E., and Wendel, J. F., “Homoeolog expression bias and expression level dominance in allopolyploid cotton”, Heredity, vol. 110, no. 2, pp. 171-180, 2013.
C. E. Grover, Gallagher, J. P., Szadkowski, E. P., Yoo, M. J., Flagel, L. E., and Wendel, J. F., “Homoeolog expression bias and expression level dominance in allopolyploids”, New Phytologist, vol. 196, no. 4, pp. 966-971, 2012.
T. Bureau, Hu, G., Hawkins, J. S., Grover, C. E., and Wendel, J. F., “The history and disposition of transposable elements in polyploid Gossypium”, Genome, vol. 53, no. 8, pp. 599-607, 2010.
C. L. Richards and Wendel, J. F., “The hairy problem of epigenetics in evolution”, New Phytologist, vol. 191, no. 1, pp. 7-9, 2011.
S. A. Kelchner and Wendel, J. F., “Hairpins create minute inversions in non-coding regions of chloroplast DNA”, Current genetics, vol. 30, no. 3, pp. 259-262, 1996.
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J. McD. Stewart, Craven, L. A., Brubaker, C., and Wendel, J. F., “Gossypium anapoides (Malvaceae), a new species from Western Australia”, Novon, vol. 23, no. 4, pp. 447-451, 2015.
B. Chaudhary, Hovav, R., Rapp, R., Verma, N., Udall, J. A., and Wendel, J. F., “Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense”, Evolution & development, vol. 10, no. 5, pp. 567-582, 2008.
G. Hu, Houston, N. L., Pathak, D., Schmidt, L., Thelen, J. J., and Wendel, J. F., “Genomically biased accumulation of seed storage proteins in allopolyploid cotton”, Genetics, vol. 189, no. 3, pp. 1103-1115, 2011.
R. A. Rapp, Udall, J. A., and Wendel, J. F., “Genomic expression dominance in allopolyploids”, Bmc Biology, vol. 7, no. 1, p. 18, 2009.
C. Xu, Bai, Y., Lin, X., Zhao, N., Hu, L., Gong, Z., Wendel, J. F., and Liu, B., “Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies”, Molecular biology and evolution, vol. 31, no. 5, pp. 1066-1076, 2014.
M. L. Ainouche and Wendel, J. F., “Genome technologies, polyploidy and evolution”, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
J. F. Wendel, “Genome evolution in polyploids”, in Plant molecular evolution, Springer Netherlands, 2000, pp. 225-249.
J. F. Wendel and Adams, K. L., “Genome evolution and gene silencing in polyploid cotton”, REGNUM VEGETABILE, vol. 143, p. 271, 2005.
N. F. Weeden and Wendel, J. F., “Genetics of plant isozymes”, in Isozymes in plant biology, Springer Netherlands, 1989, pp. 46-72.
M. D. Edwards, Stuber, C. W., and Wendel, J. F., “THE GENETIC-BASIS OF QUANTITATIVE TRAITS-EVIDENCE FROM AN EXPERIMENTAL MAIZE POPULATION”, AMERICAN JOURNAL OF BOTANY, vol. 72, no. 6. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 875-876, 1985.
V. N. Waghmare, Rong, J., Rogers, C. J., Pierce, G. J., Wendel, J. F., and Paterson, A. H., “Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum”, Theoretical and Applied Genetics, vol. 111, no. 4, pp. 665-676, 2005.
J. Rong, Pierce, G. J., Waghmare, V. N., Rogers, C. J., Desai, A., Chee, P. W., O May, L., Gannaway, J. R., Wendel, J. F., and Wilkins, T. A., “Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton”, Theoretical and applied genetics, vol. 111, no. 6, pp. 1137-1146, 2005.
J. F. Wendel, Olson, P. D., and McD, J., “Genetic diversity, introgression, and independent domestication of old world cultivated cottons”, American Journal of Botany, pp. 1795-1806, 1989.
R. J. Percifield, Hawkins, J. S., McCoy, J. - A., Widrlechner, M. P., and Wendel, J. F., “Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L.”, Planta medica, vol. 73, no. 15, p. 1614, 2007.
J. F. Wendel, Brubaker, C. L., and A Percival, E., “Genetic diversity in Gossypium hirsutum and the origin of upland cotton”, American Journal of Botany, pp. 1291-1310, 1992.
J. F. Wendel, Rowley, R., and Stewart, J. McD., “Genetic diversity in and phylogenetic relationships of the Brazilian endemic cotton, Gossypium mustelinum (Malvaceae)”, Plant Systematics and Evolution, vol. 192, no. 1-2, pp. 49-59, 1994.
J. M. Pleasants and Wendel, J. F., “Genetic diversity in a clonal narrow endemic, Erythronium propullans, and in its widespread progenitor, Erythronium albidum”, American Journal of Botany, pp. 1136-1151, 1989.
J. F. Wendel and Parks, C. R., “Genetic diversity and population structure in Camellia japonica L.(Theaceae)”, American Journal of Botany, pp. 52-65, 1985.
D. R. DeJoode and Wendel, J. F., “Genetic diversity and origin of the Hawaiian Islands cotton, Gossypium tomentosum”, American Journal of Botany, pp. 1311-1319, 1992.
C. R. Parks, Miller, N. G., Wendel, J. F., and McDougal, K. M., “Genetic divergence within the genus Liriodendron (Magnoliaceae)”, Annals of the Missouri Botanical Garden, pp. 658-666, 1983.
C. R. Parks, Wendel, J. F., Sewell, M. M., and Qui, Y. L., “Genetic control of isozyme variation in the genus Liriodendron L.(Magnoliaceae).”, Journal of Heredity, vol. 81, no. 4, pp. 317-323, 1990.
J. F. Wendel and Parks, C. R., “Genetic control of isozyme variation in Camellia japonica L.”, Journal of Heredity, vol. 73, no. 3, pp. 197-204, 1982.
J. Doebley, Stec, A., Wendel, J. F., and Edwards, M., “Genetic and morphological analysis of a maize-teosinte F2 population: implications for the origin of maize”, Proceedings of the National Academy of Sciences, vol. 87, no. 24, pp. 9888-9892, 1990.
A. Salmon, Ainouche, M. L., and Wendel, J. F., “Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)”, Molecular ecology, vol. 14, no. 4, pp. 1163-1175, 2005.
A. Madlung and Wendel, J. F., “Genetic and epigenetic aspects of polyploid evolution in plants”, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
L. Schmidt, Hu, G., and Wendel, J. F., “Genetic Analysis of Seed Storage Proteins in Gossypium”, 2009.
K. L. Adams, Cronn, R., Percifield, R., and Wendel, J. F., “Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing”, Proceedings of the National Academy of Sciences, vol. 100, no. 8, pp. 4649-4654, 2003.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., “Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective”, Genetics, vol. 200, no. 1, pp. 91-104, 2015.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., “Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective”, Genetics, 2015.

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