Publications

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Journal Article
A. L. Keyte, Percifield, R., Liu, B., and Wendel, J. F., Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.), Journal of Heredity, vol. 97, no. 5, pp. 444-450, 2006.
C. E. Grover, Kim, H. R., Wing, R. A., Paterson, A. H., and Wendel, J. F., Incongruent patterns of local and global genome size evolution in cotton, Genome research, vol. 14, no. 8, pp. 1474-1482, 2004.
J. S. Hawkins, Pleasants, J., and Wendel, J. F., Identification of AFLP markers that discriminate between cultivated cotton and the Hawaiian island endemic, Gossypium tomentosumNuttall ex Seeman, Genetic Resources and Crop Evolution, vol. 52, no. 8, pp. 1069-1078, 2005.
K. Klier, Leoschke, M. J., and Wendel, J. F., Hybridization and introgression in white and yellow ladyslipper orchids (Cypripedium candidum and C. pubescens), Journal of Heredity, vol. 82, no. 4, pp. 305-318, 1991.
A. Salmon, Flagel, L., Ying, B., Udall, J. A., and Wendel, J. F., Homoeologous nonreciprocal recombination in polyploid cotton, New Phytologist, vol. 186, no. 1, pp. 123-134, 2010.
C. E. Grover, Gallagher, J. P., Szadkowski, E. P., Yoo, M. J., Flagel, L. E., and Wendel, J. F., Homoeolog expression bias and expression level dominance in allopolyploids, New Phytologist, vol. 196, no. 4, pp. 966-971, 2012.
M. J. Yoo, Szadkowski, E., and Wendel, J. F., Homoeolog expression bias and expression level dominance in allopolyploid cotton, Heredity, vol. 110, no. 2, pp. 171-180, 2013.
T. Bureau, Hu, G., Hawkins, J. S., Grover, C. E., and Wendel, J. F., The history and disposition of transposable elements in polyploid Gossypium, Genome, vol. 53, no. 8, pp. 599-607, 2010.
C. L. Richards and Wendel, J. F., The hairy problem of epigenetics in evolution, New Phytologist, vol. 191, no. 1, pp. 7-9, 2011.
S. A. Kelchner and Wendel, J. F., Hairpins create minute inversions in non-coding regions of chloroplast DNA, Current genetics, vol. 30, no. 3, pp. 259-262, 1996.
J. McD. Stewart, Craven, L. A., Brubaker, C., and Wendel, J. F., Gossypium anapoides (Malvaceae), a new species from Western Australia, Novon, vol. 23, no. 4, pp. 447-451, 2015.
B. Chaudhary, Hovav, R., Rapp, R., Verma, N., Udall, J. A., and Wendel, J. F., Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense, Evolution & development, vol. 10, no. 5, pp. 567-582, 2008.
G. Hu, Houston, N. L., Pathak, D., Schmidt, L., Thelen, J. J., and Wendel, J. F., Genomically biased accumulation of seed storage proteins in allopolyploid cotton, Genetics, vol. 189, no. 3, pp. 1103-1115, 2011.
R. A. Rapp, Udall, J. A., and Wendel, J. F., Genomic expression dominance in allopolyploids, Bmc Biology, vol. 7, no. 1, p. 18, 2009.
C. Xu, Bai, Y., Lin, X., Zhao, N., Hu, L., Gong, Z., Wendel, J. F., and Liu, B., Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies, Molecular biology and evolution, vol. 31, no. 5, pp. 1066-1076, 2014.
J. F. Wendel and Adams, K. L., Genome evolution and gene silencing in polyploid cotton, REGNUM VEGETABILE, vol. 143, p. 271, 2005.
V. N. Waghmare, Rong, J., Rogers, C. J., Pierce, G. J., Wendel, J. F., and Paterson, A. H., Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum, Theoretical and Applied Genetics, vol. 111, no. 4, pp. 665-676, 2005.
J. Rong, Pierce, G. J., Waghmare, V. N., Rogers, C. J., Desai, A., Chee, P. W., O May, L., Gannaway, J. R., Wendel, J. F., and Wilkins, T. A., Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton, Theoretical and applied genetics, vol. 111, no. 6, pp. 1137-1146, 2005.
J. F. Wendel, Olson, P. D., and McD, J., Genetic diversity, introgression, and independent domestication of old world cultivated cottons, American Journal of Botany, pp. 1795-1806, 1989.
R. J. Percifield, Hawkins, J. S., McCoy, J. - A., Widrlechner, M. P., and Wendel, J. F., Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L., Planta medica, vol. 73, no. 15, p. 1614, 2007.
J. F. Wendel, Brubaker, C. L., and A Percival, E., Genetic diversity in Gossypium hirsutum and the origin of upland cotton, American Journal of Botany, pp. 1291-1310, 1992.
J. F. Wendel, Rowley, R., and Stewart, J. McD., Genetic diversity in and phylogenetic relationships of the Brazilian endemic cotton, Gossypium mustelinum (Malvaceae), Plant Systematics and Evolution, vol. 192, no. 1-2, pp. 49-59, 1994.
J. M. Pleasants and Wendel, J. F., Genetic diversity in a clonal narrow endemic, Erythronium propullans, and in its widespread progenitor, Erythronium albidum, American Journal of Botany, pp. 1136-1151, 1989.
J. F. Wendel and Parks, C. R., Genetic diversity and population structure in Camellia japonica L.(Theaceae), American Journal of Botany, pp. 52-65, 1985.
D. R. DeJoode and Wendel, J. F., Genetic diversity and origin of the Hawaiian Islands cotton, Gossypium tomentosum, American Journal of Botany, pp. 1311-1319, 1992.
C. R. Parks, Miller, N. G., Wendel, J. F., and McDougal, K. M., Genetic divergence within the genus Liriodendron (Magnoliaceae), Annals of the Missouri Botanical Garden, pp. 658-666, 1983.
C. R. Parks, Wendel, J. F., Sewell, M. M., and Qui, Y. L., Genetic control of isozyme variation in the genus Liriodendron L.(Magnoliaceae)., Journal of Heredity, vol. 81, no. 4, pp. 317-323, 1990.
J. F. Wendel and Parks, C. R., Genetic control of isozyme variation in Camellia japonica L., Journal of Heredity, vol. 73, no. 3, pp. 197-204, 1982.
J. Doebley, Stec, A., Wendel, J. F., and Edwards, M., Genetic and morphological analysis of a maize-teosinte F2 population: implications for the origin of maize, Proceedings of the National Academy of Sciences, vol. 87, no. 24, pp. 9888-9892, 1990.
A. Salmon, Ainouche, M. L., and Wendel, J. F., Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae), Molecular ecology, vol. 14, no. 4, pp. 1163-1175, 2005.
A. Madlung and Wendel, J. F., Genetic and epigenetic aspects of polyploid evolution in plants, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
L. Schmidt, Hu, G., and Wendel, J. F., Genetic Analysis of Seed Storage Proteins in Gossypium, 2009.
K. L. Adams, Cronn, R., Percifield, R., and Wendel, J. F., Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing, Proceedings of the National Academy of Sciences, vol. 100, no. 8, pp. 4649-4654, 2003.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective, Genetics, 2015.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective, Genetics, vol. 200, no. 1, pp. 91-104, 2015.
R. A. Rapp, Haigler, C. H., Flagel, L., Hovav, R. H., Udall, J. A., and Wendel, J. F., Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication, BMC biology, vol. 8, no. 1, p. 139, 2010.
L. E. Flagel and Wendel, J. F., Gene duplication and evolutionary novelty in plants, New Phytologist, vol. 183, no. 3, pp. 557-564, 2009.
J. F. Wendel, Cronn, R. C., J Johnston, S., and H Price, J., Feast and famine in plant genomes, Genetica, vol. 115, no. 1, pp. 37-47, 2002.
K. L. Adams and Wendel, J. F., Exploring the genomic mysteries of polyploidy in cotton, Biological Journal of the Linnean Society, vol. 82, no. 4, pp. 573-581, 2004.
L. E. Flagel and Wendel, J. F., Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation, New Phytologist, vol. 186, no. 1, pp. 184-193, 2010.
J. J. Doyle, Flagel, L. E., Paterson, A. H., Rapp, R. A., Soltis, D. E., Soltis, P. S., and Wendel, J. F., Evolutionary genetics of genome merger and doubling in plants, Annual review of genetics, vol. 42, pp. 443-461, 2008.
P. M. Fortune, Schierenbeck, K. A., Ainouche, A. K., Jacquemin, J., Wendel, J. F., and Ainouche, M. L., Evolutionary dynamics of Waxy and the origin of hexaploid Spartina species (Poaceae), Molecular phylogenetics and evolution, vol. 43, no. 3, pp. 1040-1055, 2007.
R. Hovav, Udall, J. A., Chaudhary, B., Hovav, E., Flagel, L., Hu, G., and Wendel, J. F., The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism, PLoS Genet, vol. 4, no. 2, p. e25, 2008.
M. L. Cedroni, Cronn, R. C., Adams, K. L., Wilkins, T. A., and Wendel, J. F., Evolution and expression of MYB genes in diploid and polyploid cotton, Plant molecular biology, vol. 51, no. 3, pp. 313-325, 2003.
J. F. Wendel, Edwards, M. D., and Stuber, C. W., Evidence for multilocus genetic control of preferential fertilization in maize, Heredity, vol. 58, no. 2, pp. 297-301, 1987.
J. F. Wendel, Epigenetics and plant evolution., New Phytologist, vol. 168, no. 1, pp. 81-91, 2005.
R. A. Rapp and Wendel, J. F., Epigenetics and plant evolution, New Phytologist, vol. 168, no. 1, pp. 81-91, 2005.
B. Liu and Wendel, J. F., Epigenetic phenomena and the evolution of plant allopolyploids, Molecular phylogenetics and evolution, vol. 29, no. 3, pp. 365-379, 2003.
J. F. Wendel, Epigenetic phenomena and the evolution of plant allopolyploids, 中国生物学文摘, vol. 19, no. 4, pp. 8-22, 2005.
J. F. Wendel, Electrophoretic identification of polyploidCamellia japonica (Theaceae) cultivars and evidence for their sexual origin, Plant systematics and evolution, vol. 145, no. 3-4, pp. 223-226, 1984.

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