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Journal Article

G. J. P. Naylor and Adams, D. C., “Total evidence versus relevant evidence: response to O’Leary et al. (2003)”, Systematic Biology, vol. 52, pp. 864-865, 2003.

A. H. Paterson, Lan, T. - H., Reischmann, K. P., Chang, C., Lin, Y. - R., Liu, S. - C., Burow, M. D., Kowalski, S. P., Katsar, C. S., and Delmonte, T. A., “Toward a unified genetic map of higher plants, transcending the monocot–dicot divergence”, Nature genetics, vol. 14, no. 4, pp. 380-382, 1996.

J. M. Serb, “Toward Developing Models to Study the Disease, Ecology, and Evolution of the Eye in Mollusca*”, American Malacological Bulletin, vol. 26, no. 1/2, pp. 3-18, 2008.

J. Z Chen, Scheffler, B. E., Dennis, E., Triplett, B. A., Zhang, T., Guo, W., Chen, X., Stelly, D. M., Rabinowicz, P. D., and Town, C. D., “Toward sequencing cotton (Gossypium) genomes”, Plant physiology, vol. 145, no. 4, pp. 1303-1310, 2007.

J. A. Rudgers, Strauss, S. Y., and Wendel, J. F., “Trade-offs among anti-herbivore resistance traits: insights from Gossypieae (Malvaceae)”, American Journal of Botany, vol. 91, no. 6, pp. 871-880, 2004.

B. A Duthie, Abbott, K. C., and Nason, J. D., “Trade-offs and coexistence: a lottery model applied to fig wasp communities”, The American Naturalist, vol. 183, no. 6, pp. 826-841, 2014.

B. A Duthie, Abbott, K. C., and Nason, J. D., “Trade-Offs and Coexistence: A Lottery Model Applied to Fig Wasp Communities”, The American Naturalist, vol. 183, no. 6, pp. 826-841, 2014.

, “Tradeoffs and coexistence in fluctuating environments: evidence for a key dispersal-fecundity tradeoff in five nonpollinating fig wasps”, American Naturalist, vol. 186, pp. 151-158, 2015.

R. Hovav, Faigenboim-Doron, A., Kadmon, N., Hu, G., Zhang, X., Gallagher, J. P., and Wendel, J. F., “A Transcriptome Profile for Developing Seed of Polyploid Cotton”, The Plant Genome, vol. 8, no. 1, 2015.

N. G. Davis, Houston, D. D., and Nason, J. D., “Transcriptome-Facilitated Development of SNPs for the Sonoran Desert Rock Fig, Ficus petiolaris (Moraceae)”, Applications in Plant Sciences, vol. 3, no. 7, p. 1500028, 2015.

É. Weinstein Teixeira, Daibert, R. Morais de, Júnior, L. Afonso Gla, da Silva, M. Vinicius G., Alves, M. Luisa Tele, Evans, J. Daniel, and Toth, A. Lynn, “Transcriptomic analysis suggests candidate genes for hygienic behavior in African-derived Apis mellifera honeybees”, Apidologie, pp. 1-16, 2021.

L. Rutter, Carrillo-Tripp, J., Bonning, B. C., Cook, D., Toth, A. L., and Dolezal, A. G., “Transcriptomic responses to diet quality and viral infection in Apis mellifera”, BMC Genomics, vol. 20, no. 1, p. 412, 2019.

S. Radhakrishnan, Literman, R., Neuwald, J., Severin, A., and Valenzuela, N., “Transcriptomic responses to environmental temperature by turtles with temperature-dependent and genotypic sex determination assessed by RNAseq inform the genetic architecture of embryonic gonadal development”, PloS one, vol. 12, no. 3, p. e0172044, 2017.

A. E. Russell, Raich, J. W., Valverde-Barrantes, O. J., and Fisher, R. F., “Tree species effects on soil properties in experimental plantations in tropical moist forest”, Soil Science Society of America Journal, vol. 71, no. 4, pp. 1389-1397, 2007.

E. Sherratt, Alejandrino, A., Kraemer, A. C., Serb, J. M., and Adams, D. C., “Trends in the sand: directional evolution in the shell shape of recessing scallops (Bivalvia: Pectinidae)”, Evolution, 2016.

D. Debinski, “Trophic Cascades and Biodiversity in Grand Teton National Park”, University of Wyoming National Park Service Research Center Annual Report, vol. 27, no. 1, pp. 28-32, 2003.

J. C. Maerz, Myers, E. M., and Adams, D. C., “Trophic polymorphism in a terrestrial salamander”, Evolutionary Ecology Research, vol. 8, no. 1, pp. 23-35, 2006.

E. K. Moody, Alda, F., Capps, K. A., Puebla, O., and Turner, B. L., “Trophic Trait Evolution Explains Variation in Nutrient Excretion Stoichiometry among Panamanian Armored Catfishes (Loricariidae)”, Diversity, vol. 11, no. 6, p. 88, 2019.

S. Brown, Hall, C. A. S., Knabe, W., Raich, J., Trexler, M. C., and Woomer, P., “Tropical forests: their past, present, and potential future role in the terrestrial carbon budget”, Water, Air, and Soil Pollution, vol. 70, no. 1-4, pp. 71-94, 1993.

B. J. Wilsey, Parent, G., Roulet, N. T., Moore, T. R., and Potvin, C., “Tropical pasture carbon cycling: relationships between C source/sink strength, above‐ground biomass and grazing”, Ecology Letters, vol. 5, no. 3, pp. 367-376, 2002.

E. V. A. N. D. R. O. M. A. C. H. A. D. O. PIANISSOLA, PARMA, D. A. N. I. E. L. E. F. R. E. I. T. A. S., GONÇALVES, A. N. A. P. A. U. L. A. S. A. N. T., and CLARK, L. Y. N. N. G. A. I. L., “Two new species of Chusquea subg. Swallenochloa (Poaceae: Bambusoideae: Bambuseae) from Minas Gerais, Brazil, and complete description of C. caparaoensis”, Phytotaxa, vol. 358, no. 3, pp. 235-250, 2018.

D. A. N. I. E. L. E. F. PARMA, PIANISSOLA, E. V. A. N. D. R. O. M., VINÍCIUS-SILVA, R. O. N. A. L. D. O., Clark, L. G., and SANTOS-GONÇALVES, A. N. A. P. A. U. L. A., “Two new species of Merostachys (Poaceae: Bambusoideae) from the Brazilian Atlantic forest”, Phytotaxa, vol. 267, no. 3, pp. 219-227, 2016.

R. E. Hanson, M Islam-Faridi, N., Crane, C. F., Zwick, M. S., Czeschin, D. G., Wendel, J. F., McKnight, T. D., H Price, J., and Stelly, D. M., “Ty1-copia-retrotransposon behavior in a polyploid cotton”, Chromosome Research, vol. 8, no. 1, pp. 73-76, 2000.

J. M. Serb, Porath-Krause, A. J., and Pairett, A. N., “Uncovering a gene duplication of the photoreceptive protein, opsin, in scallops (bivalvia: Pectinidae)”, Integrative and comparative biology, p. ict063, 2013.

M. Condon, Adams, D. C., Bann, D., Flaherty, K., Gammons, J., Johnson, J., Lewis, M. L., Marsteller, S., Scheffer, S. J., and Serna, F., “Uncovering tropical diversity: six sympatric cryptic species of Blepharoneura (Diptera: Tephritidae) in flowers of Gurania spinulosa (Cucurbitaceae) in eastern Ecuador”, Biological Journal of the Linnean Society, vol. 93, no. 4, pp. 779-797, 2008.

A. Schnabel, Nason, J. D., and Hamrick, J. L., “Understanding the population genetic structure of Gleditsia triacanthos L.: seed dispersal and variation in female reproductive success”, Molecular Ecology, vol. 7, no. 7, pp. 819-832, 1998.

J. W. Raich, “Understory palms as nutrient traps: A hypothesis.”, Brenesia. San Jose, no. 21, pp. 119-129, 1983.

J. W. Rice, Clough, M. P., Olson, J. K., Adams, D. C., and Colbert, J. T., “University faculty and their knowledge & acceptance of biological evolution”, Evolution: Education and Outreach, vol. 8, no. 1, p. 8, 2015.

Y. Bao, Hu, G., Grover, C. E., Conover, J., Yuan, D., and Wendel, J. F., “Unraveling cis and trans regulatory evolution during cotton domestication”, Nature Communications, vol. 10, no. 1, pp. 1-12, 2019.

A. H. Paterson and Wendel, J. F., “Unraveling the fabric of polyploidy”, Nature biotechnology, vol. 33, no. 5, pp. 491-493, 2015.

A. H. Paterson and Wendel, J. F., “Unraveling the fabric of polyploidy”, Nature Biotechnology, vol. 33, no. 5, pp. 491-493, 2015.

J. A. Audino, Serb, J. M., and Marian, J. Eduardo A. R., “Untangling the diversity and evolution of tentacles in scallops, oysters, and their relatives (Bivalvia: Pteriomorphia)”, Organisms Diversity & Evolution, pp. 1-16, 2021.

R. A. Moranz, Debinski, D. M., McGranahan, D. A., Engle, D. M., and Miller, J. R., “Untangling the effects of fire, grazing, and land-use legacies on grassland butterfly communities”, Biodiversity and Conservation, vol. 21, no. 11, pp. 2719-2746, 2012.

J. W. Dalling, Winter, K., Nason, J. D., Hubbell, S. P., Murawski, D. A., and Hamrick, J. L., “The unusual life history of Alseis blackiana: a shade-persistent pioneer tree?”, Ecology, vol. 82, no. 4, pp. 933-945, 2001.

J. F. Wendel, Schnabel, A., and Seelanan, T., “An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression”, Molecular phylogenetics and evolution, vol. 4, no. 3, pp. 298-313, 1995.

B. J. Wilsey, “Urea additions and defoliation affect plant responses to elevated CO2 in a C3 grass from Yellowstone National Park”, Oecologia, vol. 108, no. 2, pp. 321-327, 1996.

S. Altenbach, Anderson, O., Bigwood, D., Cantinhour, S., Coe, E., Datko, A., Heller, S., Kaleikau, E., McCouch, S., and Kohel, R., “USDA plant genome research program”, ADVANCES IN AGRONOMY, VOL 55, vol. 55, pp. 113-166, 1995.

A. M. Sparkman, Chism, K. R., Bronikowski, A. M., Brummett, L. J., Combrink, L. L., Davis, C. L., Holden, K. G., Kabey, N. M., and Miller, D. A. W., “Use of field‐portable ultrasonography reveals differences in developmental phenology and maternal egg provisioning in two sympatric viviparous snakes”, Ecology and Evolution, 2018.

J. A. Eccard, Dean, W. R. J., Wichmann, M. C., Huttunen, S. M., Eskelinen, E., Moloney, K. A., and Jeltsch, F., “Use of large Acacia trees by the cavity dwelling Black-tailed Tree Rat in the Southern Kalahari”, Journal of arid environments, vol. 64, no. 4, pp. 604-615, 2006.

J. W. Raich, Riley, R. H., and Vitousek, P. M., “Use of root-ingrowth cores to assess nutrient limitations in forest ecosystems”, Canadian Journal of Forest Research, vol. 24, no. 10, pp. 2135-2138, 1994.

D. M. Debinski and Brussard, P. F., “Using biodiversity data to assess species-habitat relationships in Glacier National Park, Montana”, Ecological Applications, pp. 833-843, 1994.

J. M. Serb, Orr, M. C., and M Greenlee, H. West, “Using evolutionary conserved modules in gene networks as a strategy to leverage high throughput gene expression queries”, PloS one, vol. 5, no. 10.1371, 2010.

G. L. W. Perry, Moloney, K. A., and Etherington, T. R., “Using network connectivity to prioritise sites for the control of invasive species”, Journal of Applied Ecology, 2016.

D. I. Speiser, M Pankey, S., Zaharoff, A. K., Battelle, B. A., Bracken-Grissom, H. D., Breinholt, J. W., Bybee, S. M., Cronin, T. W., Garm, A., and Lindgren, A. R., “Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms”, BMC bioinformatics, vol. 15, no. 1, p. 350, 2014.

D. C. Adams and Anthony, C. D., “Using randomization techniques to analyse behavioural data”, Animal Behaviour, vol. 51, no. 4, pp. 733-738, 1996.

K. Kane, Debinski, D., Anderson, C., Scasta, J. Derek, Engle, D., and Miller, J., “Using Regional Climate Projections to Guide Grassland Community Restoration in the Face of Climate Change”, Frontiers in Plant Science, vol. 8, p. 730, 2017.

D. S. Waits, Simpson, D. Y., Sparkman, A. M., Bronikowski, A. M., and Schwartz, T. S., “The Utility of Reptile Blood Transcriptomes in Molecular Ecology.”, Molecular ecology resources, 2019.

P. K. Bretting and Wendel, J. F., “Utility of Tpi3 and Tpi4 variants in quality control of hybrid popcorn seed production.”, Maize Genetics Cooperation News Letter, no. 64, pp. 121-122, 1990.

S. Hall, Wegner, M. S., Hardy, J., and Workman, M., “Valuing energy futures; a comparative analysis of value pools across UK energy system scenarios”, Applied Energy, 2017.

K. J. Egan, Sr, J. A. Herriges, Kling, C. L., and Downing, J. A., “Valuing Water Quality in Midwestern Lake Ecosystems”, Iowa Ag Review, vol. 10, no. 3, p. 2, 2015.

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