Publications
“A phylogenetic analysis of indel dynamics in the cotton genus”, Molecular Biology and Evolution, vol. 25, no. 7, pp. 1415-1428, 2008.
, , “Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea”, American journal of botany, vol. 95, no. 6, pp. 756-765, 2008.
, “Repeated big bangs and the expanding universe: Directionality in plant genome size evolution”, Plant Science, vol. 174, no. 6, pp. 557-562, 2008.
, “Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton”, Journal of heredity, p. esp003, 2009.
, “Evolution and natural history of the cotton genus”, in Genetics and genomics of cotton, Springer US, 2009, pp. 3-22.
, “Gene duplication and evolutionary novelty in plants”, New Phytologist, vol. 183, no. 3, pp. 557-564, 2009.
, , “Genomic expression dominance in allopolyploids”, Bmc Biology, vol. 7, no. 1, p. 18, 2009.
, “Initiation and early development of fiber in wild and cultivated cotton”, International Journal of Plant Sciences, vol. 170, no. 5, pp. 561-574, 2009.
, “Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium)”, Bmc Genomics, vol. 10, no. 1, p. 378, 2009.
, “Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants”, Proceedings of the National Academy of Sciences, vol. 106, no. 42, pp. 17811-17816, 2009.
, “Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium)”, Genetics, vol. 182, no. 2, pp. 503-517, 2009.
, “Responses of the cotton genome to polyploidy”, in Genetics and Genomics of Cotton, Springer US, 2009, pp. 419-429.
, “Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation”, New Phytologist, vol. 186, no. 1, pp. 184-193, 2010.
, “Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication”, BMC biology, vol. 8, no. 1, p. 139, 2010.
, “The history and disposition of transposable elements in polyploid Gossypium”, Genome, vol. 53, no. 8, pp. 599-607, 2010.
, “Homoeologous nonreciprocal recombination in polyploid cotton”, New Phytologist, vol. 186, no. 1, pp. 123-134, 2010.
, “Multiple patterns of rDNA evolution following polyploidy in Oryza”, Molecular phylogenetics and evolution, vol. 55, no. 1, pp. 136-142, 2010.
, “The origin and evolution of Gossypium”, in Physiology of cotton, Springer Netherlands, 2010, pp. 1-18.
, “Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber”, Journal of integrative plant biology, vol. 52, no. 2, pp. 205-220, 2010.
, “Recent insights into mechanisms of genome size change in plants”, Journal of Botany, vol. 2010, 2010.
, “Reproductive and Pollination Biology of the Endemic Hawaiian Cotton, Gossypium tomentosum (Malvaceae) 1”, Pacific Science, vol. 64, no. 1, pp. 45-55, 2010.
, “Genomically biased accumulation of seed storage proteins in allopolyploid cotton”, Genetics, vol. 189, no. 3, pp. 1103-1115, 2011.
, “The hairy problem of epigenetics in evolution”, New Phytologist, vol. 191, no. 1, pp. 7-9, 2011.
, “Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium)”, Proceedings of the National Academy of Sciences, vol. 108, no. 52, pp. 21152-21157, 2011.
, “Assessing the monophyly of polyploid Gossypium species”, Plant systematics and evolution, vol. 298, no. 6, pp. 1177-1183, 2012.
, “The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco”, Molecular biology and evolution, vol. 29, no. 10, pp. 3023-3036, 2012.
, “Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton”, BMC genomics, vol. 13, no. 1, p. 302, 2012.
, “Homoeolog expression bias and expression level dominance in allopolyploids”, New Phytologist, vol. 196, no. 4, pp. 966-971, 2012.
, “Jeans, genes, and genomes: cotton as a model for studying polyploidy”, in Polyploidy and genome evolution, Springer Berlin Heidelberg, 2012, pp. 181-207.
, Plant Genome Diversity: Vol. 1: Plant Genomes, Their Residents, and Their Evolutionary Dynamics. Springer, 2012.
, Plant Genome Diversity Volume 2: Physical Structure, Behaviour and Evolution of Plant Genomes, vol. 2. Springer Science & Business Media, 2012.
, “Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres”, Nature, vol. 492, no. 7429, pp. 423-427, 2012.
, “Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton”, G3: Genes| Genomes| Genetics, vol. 2, no. 8, pp. 921-930, 2012.
, “Targeted sequence capture as a powerful tool for evolutionary analysis1”, American journal of botany, vol. 99, no. 2, pp. 312-319, 2012.
, “A bountiful harvest: genomic insights into crop domestication phenotypes”, Annual Review of Plant Biology, vol. 64, pp. 47-70, 2013.
, “Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species”, Genome biology and evolution, vol. 5, no. 12, pp. 2449-2459, 2013.
, “Crop plants as models for understanding plant adaptation and diversification”, Frontiers in plant science, vol. 4, 2013.
, “Dynamics of duplicated gene expression in Polyploid Cotton”, Polyploid and hybrid genomics, pp. 187-194, 2013.
, “Genetic and epigenetic aspects of polyploid evolution in plants”, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
, “Homoeolog expression bias and expression level dominance in allopolyploid cotton”, Heredity, vol. 110, no. 2, pp. 171-180, 2013.
, “Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing”, G3: Genes| Genomes| Genetics, vol. 3, no. 10, pp. 1809-1818, 2013.
, “Jeans, Genes, and The Independent Domestications Of Cotton”, Plant and Animal Genome XXI Conference. Plant and Animal Genome, 2013.
, “Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense”, New Phytologist, vol. 200, no. 2, pp. 570-582, 2013.
, “Ancient gene duplicates in Gossypium (Cotton) exhibit near-complete expression divergence”, Genome biology and evolution, vol. 6, no. 3, pp. 559-571, 2014.
, “CenH3 evolution in diploids and polyploids of three angiosperm genera”, BMC plant biology, vol. 14, no. 1, p. 383, 2014.
, , , “Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology”, Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 369, no. 1648, p. 20130341, 2014.
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