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J. F. Wendel, Schnabel, A., and Seelanan, T., An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression, Molecular phylogenetics and evolution, vol. 4, no. 3, pp. 298-313, 1995.
J. F. Wendel, Epigenetics and plant evolution., New Phytologist, vol. 168, no. 1, pp. 81-91, 2005.
J. F. Wendel and Percy, R. G., Allozyme diversity and introgression in the Galapagos Islands endemic Gossypium darwinii and its relationship to continental G. barbadense, Biochemical Systematics and Ecology, vol. 18, no. 7, pp. 517-528, 1990.
J. F. Wendel and Parks, C. R., Distorted segregation and linkage of alcohol dehydrogenase genes in Camellia japonica L.(Theacease), Biochemical genetics, vol. 22, no. 7-8, pp. 739-748, 1984.
J. F. Wendel, Schnabel, A., and Seelanan, T., Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium), Proceedings of the National Academy of Sciences, vol. 92, no. 1, pp. 280-284, 1995.
J. F. Wendel and Parks, C. R., Cultivar characterization and nomenclatural clarification by protein electrophoresis in Camellia japonica L, American Camellia Yearbook (USA), 1982.
J. F. Wendel and Parks, C. R., Genetic diversity and population structure in Camellia japonica L.(Theaceae), American Journal of Botany, pp. 52-65, 1985.
J. F. Wendel, Edwards, M. D., and Stuber, C. W., Evidence for multilocus genetic control of preferential fertilization in maize, Heredity, vol. 58, no. 2, pp. 297-301, 1987.
J. F. Wendel, Electrophoretic identification of polyploidCamellia japonica (Theaceae) cultivars and evidence for their sexual origin, Plant systematics and evolution, vol. 145, no. 3-4, pp. 223-226, 1984.
J. F. Wendel and Albert, V. A., Phylogenetics of the cotton genus (Gossypium): character-state weighted parsimony analysis of chloroplast-DNA restriction site data and its systematic and biogeographic implications, Systematic Botany, pp. 115-143, 1992.
J. F. Wendel and Grover, C. E., Taxonomy and Evolution of the Cotton Genus, Gossypium, Cotton, no. agronmonogr57, 2015.
J. F. Wendel and Wessler, S. R., Retrotransposon-mediated genome evolution on a local ecological scale, Proceedings of the National Academy of Sciences, vol. 97, no. 12, pp. 6250-6252, 2000.
J. F. Wendel and Parks, C. R., Cultivar identification in Camellia japonica L. using allozyme polymorphisms., Journal American Society for Horticultural Science, 1983.
J. F. Wendel, Genome evolution in polyploids, in Plant molecular evolution, Springer Netherlands, 2000, pp. 225-249.
J. F. Wendel, Epigenetic phenomena and the evolution of plant allopolyploids, 中国生物学文摘, vol. 19, no. 4, pp. 8-22, 2005.
J. F. Wendel, Cronn, R. C., J Johnston, S., and H Price, J., Feast and famine in plant genomes, Genetica, vol. 115, no. 1, pp. 37-47, 2002.
J. F. Wendel, Olson, P. D., and McD, J., Genetic diversity, introgression, and independent domestication of old world cultivated cottons, American Journal of Botany, pp. 1795-1806, 1989.
J. F. Wendel, Brubaker, C. L., and Seelanan, T., The origin and evolution of Gossypium, in Physiology of cotton, Springer Netherlands, 2010, pp. 1-18.
J. F. Wendel and Cronn, R. C., Polyploidy and the evolutionary history of cotton, Advances in agronomy, vol. 78, pp. 139-186, 2003.
J. F. Wendel, Edwards, M. D., and Stuber, C. W., MULTILOCUS GENETIC-CONTROL OF PREFERENTIAL FERTILIZATION IN ZEA-MAYS-L, AMERICAN JOURNAL OF BOTANY, vol. 74, no. 5. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 671-671, 1987.
J. F. Wendel and Percival, A. E., Molecular divergence in the Galapagos Islands—Baja California species pair, Gossypium klotzschianum andG. davidsonii (Malvaceae), Plant Systematics and Evolution, vol. 171, no. 1-4, pp. 99-115, 1990.
J. F. Wendel, Stuber, C. W., Goodman, M. M., and Beckett, J. B., Duplicated plastid and triplicated cytosolic isozymes of triosephosphate isomerase in maize (Zea mays L.), Journal of Heredity, vol. 80, no. 3, pp. 218-228, 1989.
J. F. Wendel and Adams, K. L., Genome evolution and gene silencing in polyploid cotton, REGNUM VEGETABILE, vol. 143, p. 271, 2005.
J. F. Wendel and Parks, C. R., Genetic control of isozyme variation in Camellia japonica L., Journal of Heredity, vol. 73, no. 3, pp. 197-204, 1982.
J. F. Wendel, Cronn, R. C., Álvarez, I., Liu, B., Small, R. L., and Senchina, D. S., Intron size and genome size in plants, Molecular biology and evolution, vol. 19, no. 12, pp. 2346-2352, 2002.
J. F. Wendel, Brubaker, C., Álvarez, I., Cronn, R., and Stewart, J. McD., Evolution and natural history of the cotton genus, in Genetics and genomics of cotton, Springer US, 2009, pp. 3-22.
J. F. Wendel, New World tetraploid cottons contain Old World cytoplasm, Proceedings of the National Academy of Sciences, vol. 86, no. 11, pp. 4132-4136, 1989.
J. F. Wendel, Edwards, M. D., and Stuber, C. W., SOME GENETIC CONSEQUENCES OF REUNITING 2 RACIALLY DIVERGENT POPULATIONS OF ZEA-MAYS-L, AMERICAN JOURNAL OF BOTANY, vol. 72, no. 6. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 879-879, 1985.
J. F. Wendel, McD, J., and Rettig, J. H., Molecular evidence for homoploid reticulate evolution among Australian species of Gossypium, Evolution, pp. 694-711, 1991.
J. F. Wendel, Rowley, R., and Stewart, J. McD., Genetic diversity in and phylogenetic relationships of the Brazilian endemic cotton, Gossypium mustelinum (Malvaceae), Plant Systematics and Evolution, vol. 192, no. 1-2, pp. 49-59, 1994.
J. F. Wendel, Flagel, L. E., and Adams, K. L., Jeans, genes, and genomes: cotton as a model for studying polyploidy, in Polyploidy and genome evolution, Springer Berlin Heidelberg, 2012, pp. 181-207.
J. F. Wendel, Brubaker, C. L., and A Percival, E., Genetic diversity in Gossypium hirsutum and the origin of upland cotton, American Journal of Botany, pp. 1291-1310, 1992.
J. F. Wendel and Doyle, J., 7 Polyploidy and evolution in plants, Plant diversity and evolution: genotypic and phenotypic variation in higher plants, p. 97, 2005.
J. F. Wendel, Goodman, M. M., Stuber, C. W., and Beckett, J. B., New isozyme systems for maize (Zea mays L.): aconitate hydratase, adenylate kinase, NADH dehydrogenase, and shikimate dehydrogenase, Biochemical genetics, vol. 26, no. 5-6, pp. 421-445, 1988.
J. F. Wendel and Doyle, J. J., Phylogenetic incongruence: window into genome history and molecular evolution, in Molecular systematics of plants II, Springer US, 1998, pp. 265-296.
J. F. Wendel, Jeans, Genes, and The Independent Domestications Of Cotton, Plant and Animal Genome XXI Conference. Plant and Animal Genome, 2013.
J. F. Wendel, Stuber, C. W., Edwards, M. D., and Goodman, M. M., Duplicated chromosome segments in maize (Zea mays L.): further evidence from hexokinase isozymes, TAG Theoretical and Applied Genetics, vol. 72, no. 2, pp. 178-185, 1986.
J. F. Wendel, Electrophoretic analysis of genetic variation in wild and cultivated Camellia japonica L., PhD Thesis, University of North Carolina, 1983.
J. F. Wendel and Parks, C. R., Application of electrophoresis to taxonomic and breeding problems in Camellias, Camellia J, vol. 34, no. 4, pp. 39-41, 1979.