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L. E. Flagel, Chen, L., Chaudhary, B., and Wendel, J. F., “Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton”, Journal of heredity, p. esp003, 2009.
L. E. Flagel, Rapp, R. A., Grover, C. E., Widrlechner, M. P., Hawkins, J., Grafenberg, J. L., Álvarez, I., Chung, G. Young, and Wendel, J. F., “Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea”, American journal of botany, vol. 95, no. 6, pp. 756-765, 2008.
L. E. Flagel and Wendel, J. F., “Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation”, New Phytologist, vol. 186, no. 1, pp. 184-193, 2010.
L. E. Flagel and Wendel, J. F., “Gene duplication and evolutionary novelty in plants”, New Phytologist, vol. 183, no. 3, pp. 557-564, 2009.
L. E. Flagel, Wendel, J. F., and Udall, J. A., “Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton”, BMC genomics, vol. 13, no. 1, p. 302, 2012.