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J. F. Wendel, Cronn, R. C., Álvarez, I., Liu, B., Small, R. L., and Senchina, D. S., Intron size and genome size in plants, Molecular biology and evolution, vol. 19, no. 12, pp. 2346-2352, 2002.
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V. L. Sork, Nason, J., Campbell, D. R., and Fernandez, J. F., Landscape approaches to historical and contemporary gene flow in plants, Trends in Ecology & Evolution, vol. 14, no. 6, pp. 219-224, 1999.
M. Yoon Chung, Nason, J., Chung, M. Gi, Kim, K. - J., Park, C. - W., Sun, B. - Y., and Pak, J. - H., Landscape-level spatial genetic structure in Quercus acutissima (Fagaceae), American Journal of Botany, vol. 89, no. 8, pp. 1229-1236, 2002.
M. Yoon Chung, Nason, J., Chung, M. Gi, Kim, K. - J., Park, C. - W., Sun, B. - Y., and Pak, J. - H., Landscape-level spatial genetic structure in Quercus acutissima (Fagaceae), American Journal of Botany, vol. 89, no. 8, pp. 1229-1236, 2002.
Z. Yu, Lu, C., Tian, H., and Canadell, J. G., Largely underestimated carbon emission from land use and land cover change in the conterminous US, Global change biology, 2019.
R. L. Small, Cronn, R. C., and Wendel, J. F., LAS Johnson Review No. 2. Use of nuclear genes for phylogeny reconstruction in plants, Australian Systematic Botany, vol. 17, no. 2, pp. 145-170, 2004.
T. J. Gallaher, Adams, D. C., Attigala, L., Burke, S. V., Craine, J. M., Duvall, M. R., Klahs, P. C., Sherratt, E., Wysocki, W. P., and Clark, L. G., Leaf shape and size tracks habitat transitions across forest‐grassland boundaries in the grass family (Poaceae), Evolution, 2019.
T. J. Gallaher, Adams, D. C., Attigala, L., Burke, S. V., Craine, J. M., Duvall, M. R., Klahs, P. C., Sherratt, E., Wysocki, W. P., and Clark, L. G., Leaf shape and size tracks habitat transitions across forest‐grassland boundaries in the grass family (Poaceae), Evolution, 2019.
J. E. Coate, Buggs, R. J. A., Wendel, J. F., Doyle, J. J., Soltis, D. E., and Soltis, P. S., The legacy of diploid progenitors in allopolyploid gene, 2014.
R. J. A. Buggs, Wendel, J. F., Doyle, J. J., Soltis, D. E., Soltis, P. S., and Coate, J. E., The legacy of diploid progenitors in allopolyploid gene expression patterns, Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 369, no. 1648, p. 20130354, 2014.
M. A. Condon, Scheffer, S. J., Lewis, M. L., Wharton, R., Adams, D. C., and Forbes, A. A., Lethal interactions between parasites and prey increase niche diversity in a tropical community, Science, vol. 343, no. 6176, pp. 1240-1244, 2014.
E. Öckinger, Schweiger, O., Crist, T. O., Debinski, D. M., Krauss, J., Kuussaari, M., Petersen, J. D., Pöyry, J., Settele, J., and Summerville, K. S., Life‐history traits predict species responses to habitat area and isolation: a cross‐continental synthesis, Ecology letters, vol. 13, no. 8, pp. 969-979, 2010.
K. A. Suiter, Wendel, J. F., and J Case, S., LINKAGE-1: a PASCAL computer program for the detection and analysis of genetic linkage, Journal of Heredity, vol. 74, no. 3, pp. 203-204, 1983.
D. C. Adams, West, M. E., and Collyer, M. L., Location‐specific sympatric morphological divergence as a possible response to species interactions in West Virginia Plethodon salamander communities, Journal of Animal Ecology, vol. 76, no. 2, pp. 289-295, 2007.
Z. Yu, Lu, C., Cao, P., and Tian, H., Long‐term terrestrial carbon dynamics in the Midwestern United States during 1850‐2015: Roles of land use and cover change and agricultural management, Global change biology, 2018.
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J. W. Raich and Christensen, N. L., Malaysian dipterocarp forest: tree seedling and sapling species composition and small-scale disturbance patterns, National Geographic research (USA), 1989.
J. L. Conover, Karimi, N., Stenz, N., Ané, C., Grover, C. E., Skema, C., Tate, J. A., Wolff, K., Logan, S. A., and Wendel, J. F., A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?, Journal of Integrative Plant Biology, 2018.
E. A. Addis, Gangloff, E. J., Palacios, M. G., Carr, K. E., and Bronikowski, A. M., Merging the “Morphology–Performance–Fitness” Paradigm and Life-History Theory in the Eagle Lake Garter Snake Research Project, Integrative and Comparative Biology, 2017.
J. Rong, F Feltus, A., Waghmare, V. N., Pierce, G. J., Chee, P. W., Draye, X., Saranga, Y., Wright, R. J., Wilkins, T. A., and O May, L., Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development, Genetics, vol. 176, no. 4, pp. 2577-2588, 2007.
M. L. Collyer, Sekora, D. J., and Adams, D. C., A method for analysis of phenotypic change for phenotypes described by high-dimensional data, Heredity, 2014.
B. W. Perry, Card, D. C., McGlothlin, J. W., Pasquesi, G. I. M., Adams, R. H., Schield, D. R., Hales, N. R., Corbin, A. B., Demuth, J. P., and Hoffmann, F. G., Molecular adaptations for sensing and securing prey and insight into amniote genome diversity from the garter snake genome, Genome biology and evolution, 2018.
B. W. Perry, Card, D. C., McGlothlin, J. W., Pasquesi, G. I. M., Adams, R. H., Schield, D. R., Hales, N. R., Corbin, A. B., Demuth, J. P., and Hoffmann, F. G., Molecular adaptations for sensing and securing prey and insight into amniote genome diversity from the garter snake genome, Genome biology and evolution, 2018.
Z. Chen, Grover, C. E., Li, P., Wang, Y., Nie, H., Zhao, Y., Wang, M., Liu, F., Zhou, Z., and Wang, X., Molecular evolution of the plastid genome during diversification of the cotton genus, Molecular Phylogenetics and Evolution, 2017.
C. D. Tyrrell, Londoño, X., Prieto, R. Oviedo, Attigala, L., McDonald, K., and Clark, L. G., Molecular phylogeny and cryptic morphology reveal a new genus of West Indian woody bamboo (Poaceae: Bambusoideae: Bambuseae) hidden by convergent character evolution, Taxon, vol. 67, no. 5, pp. 916-930, 2018.
C. de Jesus-Costa, Clark, L. G., and SANTOS-GONÇALVES, A. N. A. P. A. U. L. A., Molecular Phylogeny of Atractantha, and the Phylogenetic Position and Circumscription of Athroostachys (Poaceae: Bambusoideae: Bambuseae: Arthrostylidiinae), Systematic Botany, vol. 43, no. 3, pp. 656-663, 2018.
T. Seelanan, Brubaker, C. L., McD, J., Craven, L. A., and Wendel, J. F., Molecular systematics of Australian Gossypium section grandicalyx (Malvaceae), Systematic Botany, pp. 183-208, 1999.
G. Mynhardt, Alejandrino, A., Puslednik, L., Corrales, J., and Serb, J. M., Molluscan Studies, Journal of Molluscan Studies, vol. 80, pp. 400-411, 2014.
J. C. Caruthers and Debinski, D., Montane Meadow Butterfly Species Distributions in the Greater Yellowstone Ecosystem, University of Wyoming National Park Service Research Center Annual Report, vol. 30, no. 1, pp. 85-96, 2006.
D. M. Debinski, Wickham, H., Kindscher, K., Caruthers, J. C., and Germino, M., Montane meadow change during drought varies with background hydrologic regime and plant functional group, Ecology, vol. 91, no. 6, pp. 1672-1681, 2010.
E. Ruiz-Sanchez, Clark, L. G., Londoño, X., Mejía-Saulés, T., and Cortés, G., Morphological keys to the genera and species of bamboos (Poaceae: Bambusoideae) of Mexico, Phytotaxa, vol. 236, no. 1, pp. 1-24, 2015.
E. Ruiz-Sanchez, Clark, L. G., Londoño, X., Mejía-Saulés, T., and Cortés, G., Morphological keys to the genera and species of bamboos (Poaceae: Bambusoideae) of Mexico, Phytotaxa, vol. 236, no. 1, pp. 1-24, 2015.
D. C. Adams, Cardini, A., Monteiro, L. R., O'Higgins, P., and Rohlf, F. J., Morphometrics and phylogenetics: principal components of shape from cranial modules are neither appropriate nor effective cladistic characters, Journal of Human Evolution, vol. 60, no. 2, pp. 240-243, 2011.
W. J. Caldecutt and Adams, D. C., Morphometrics of trophic osteology in the threespine stickleback, Gasterosteus aculeatus, Copeia, pp. 827-838, 1998.
D. C. Adams and Collyer, M. L., Multivariate Phylogenetic Comparative Methods: Evaluations, Comparisons, and Recommendations, Systematic Biology, 2017.
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K. A. I. O. V. I. N. I. C. I. U. S. D. VIDAL, WELKER, C. A. S. S. I. A. N. O. A. D. O. R. N. E. L. E. S., OLIVEIRA, I. A. S. M. I. N. L. A. I. A. N. E. C., DA MOTA, A. L. I. N. E. C. O. S. T. A., OLIVEIRA, R. E. Y. J. A. N. E. P., and Clark, L. G., A new species of Chusquea subg. Chusquea (Poaceae—Bambusoideae—Bambuseae) from Minas Gerais, Brazil: morphological evidence and phylogenetic placement within the Euchusquea clade, Phytotaxa, vol. 365, no. 1, pp. 73-88, 2018.
E. Ruiz-Sanchez, Clark, L. G., Mejía-Saulés, T., and LOREA-HERNÁNDEZ, F. R. A. N. C. I. S. C. O., A new species of Merostachys (Poaceae: Bambusoideae: Bambuseae: Arthrostylidiinae) with the northernmost distribution of the genus, Phytotaxa, vol. 344, no. 1, pp. 31-38, 2018.
L. G. Clark, Wendel, J. F., and Ven, L. A. Cra, A new species of Micraira (Poaceae: Micraireae) from northern Western Australia, 1995.
J. Sitters, Wubs, E. R. Jasper, Bakker, E. S., Crowther, T. W., Adler, P. B., Bagchi, S., Bakker, J. D., Biederman, L., Borer, E. T., and Cleland, E. E., Nutrient availability controls the impact of mammalian herbivores on soil carbon and nitrogen pools in grasslands, Global Change Biology, 2020.
J. Sitters, Wubs, E. R. Jasper, Bakker, E. S., Crowther, T. W., Adler, P. B., Bagchi, S., Bakker, J. D., Biederman, L., Borer, E. T., and Cleland, E. E., Nutrient availability controls the impact of mammalian herbivores on soil carbon and nitrogen pools in grasslands, Global Change Biology, 2020.
B. J. Wilsey and Chabreck, R. H., Nutritional quality of nutria diets in three Louisiana wetland habitats., Northeast Gulf Sci., vol. 12, no. 1, pp. 67-72, 1991.
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R. Hovav, Chaudhary, B., Udall, J. A., Flagel, L., and Wendel, J. F., Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton, Genetics, vol. 179, no. 3, pp. 1725-1733, 2008.
B. Chaudhary, Hovav, R., Flagel, L., Mittler, R., and Wendel, J. F., Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium), Bmc Genomics, vol. 10, no. 1, p. 378, 2009.
R. Hovav, Udall, J. A., Chaudhary, B., Rapp, R., Flagel, L., and Wendel, J. F., Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant, Proceedings of the National Academy of Sciences, vol. 105, no. 16, pp. 6191-6195, 2008.
K. A. Moloney, Levin, S. A., Chiariello, N. R., and Buttel, L., Pattern and scale in a serpentine grassland, Theoretical Population Biology, vol. 41, no. 3, pp. 257-276, 1992.
M. Yoon Chung, Nason, J. D., and Chung, M. Gi, Patterns of hybridization and population genetic structure in the terrestrial orchids Liparis kumokiri and Liparis makinoana (Orchidaceae) in sympatric populations, Molecular Ecology, vol. 14, no. 14, pp. 4389-4402, 2005.
M. Yoon Chung, Nason, J. D., and Chung, M. Gi, Patterns of hybridization and population genetic structure in the terrestrial orchids Liparis kumokiri and Liparis makinoana (Orchidaceae) in sympatric populations, Molecular Ecology, vol. 14, no. 14, pp. 4389-4402, 2005.
R. Cronn, Cedroni, M., Haselkorn, T., Grover, C., and Wendel, J. F., PCR-mediated recombination in amplification products derived from polyploid cotton, Theoretical and Applied Genetics, vol. 104, no. 2-3, pp. 482-489, 2002.
R. Cronn, Cedroni, M., Haselkorn, T., Grover, C., and Wendel, J. F., PCR-mediated recombination in amplification products derived from polyploid cotton, Theoretical and Applied Genetics, vol. 104, no. 2-3, pp. 482-489, 2002.
D. C. Adams and Collyer, M. L., Permutation tests for phylogenetic comparative analyses of high‐dimensional shape data: What you shuffle matters, Evolution, vol. 69, no. 3, pp. 823-829, 2015.
M. L. Collyer, Stockwell, C. A., Adams, D. C., and M Reiser, H., Phenotypic plasticity and contemporary evolution in introduced populations: evidence from translocated populations of white sands pupfish (Cyrpinodon tularosa), Ecological Research, vol. 22, no. 6, pp. 902-910, 2007.

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