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Journal Article
J. F. Wendel, Electrophoretic analysis of genetic variation in wild and cultivated Camellia japonica L., PhD Thesis, University of North Carolina, 1983.
K. L. Adams and Wendel, J. F., Dynamics of duplicated gene expression in Polyploid Cotton, Polyploid and hybrid genomics, pp. 187-194, 2013.
J. F. Wendel, Stuber, C. W., Goodman, M. M., and Beckett, J. B., Duplicated plastid and triplicated cytosolic isozymes of triosephosphate isomerase in maize (Zea mays L.), Journal of Heredity, vol. 80, no. 3, pp. 218-228, 1989.
R. C. Cronn, Small, R. L., and Wendel, J. F., Duplicated genes evolve independently after polyploid formation in cotton, Proceedings of the National Academy of Sciences, vol. 96, no. 25, pp. 14406-14411, 1999.
J. F. Wendel, Stuber, C. W., Edwards, M. D., and Goodman, M. M., Duplicated chromosome segments in maize (Zea mays L.): further evidence from hexokinase isozymes, TAG Theoretical and Applied Genetics, vol. 72, no. 2, pp. 178-185, 1986.
L. Flagel, Udall, J., Nettleton, D., and Wendel, J. F., Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution, BMC biology, vol. 6, no. 1, p. 16, 2008.
L. E. Flagel, Wendel, J. F., and Udall, J. A., Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton, BMC genomics, vol. 13, no. 1, p. 302, 2012.
O. Panaud, Jackson, S. A., and Wendel, J. F., Drivers and dynamics of diversity in plant genomes, New Phytologist, vol. 202, no. 1, pp. 15-18, 2014.
S. Renny-Byfield and Wendel, J. F., Doubling down on genomes: polyploidy and crop plants, American journal of botany, vol. 101, no. 10, pp. 1711-1725, 2014.
R. Whitkus, Doebley, J., and Wendel, J. F., DNA-based markers in plants, Nuclear DNA markers in systematics and evolution. Kluwer, Amsterdam, pp. 116-141, 1994.
Q. Pan, Wendel, J. F., and Fluhr, R., Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes, Journal of molecular evolution, vol. 50, no. 3, pp. 203-213, 2000.
J. F. Wendel and Parks, C. R., Distorted segregation and linkage of alcohol dehydrogenase genes in Camellia japonica L.(Theacease), Biochemical genetics, vol. 22, no. 7-8, pp. 739-748, 1984.
X. P. Zhao, Si, Y., Hanson, R. E., Crane, C. F., Price, H. J., Stelly, D. M., Wendel, J. F., and Paterson, N. H., Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton (vol 8, pg 479, 1998), GENOME RESEARCH, vol. 8, no. 6, pp. 682-682, 1998.
D. M. Stelly, Wendel, J. F., and Paterson, A. H., Dispersed Repetitive DNA Has Spread to New Genomes Since Polyploid Formation in Cotton Xin-ping Zhao, Yang Si, Robert E. Hanson, 2 Charles F. Crane, 2 H. James Price, 2, Genome Research, vol. 8, pp. 479-492, 1998.
X. -ping Zhao, Si, Y., Hanson, R. E., Crane, C. F., H Price, J., Stelly, D. M., Wendel, J. F., and Paterson, A. H., Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton, Genome Research, vol. 8, no. 5, pp. 479-492, 1998.
J. S. Hawkins, Kim, H. R., Nason, J. D., Wing, R. A., and Wendel, J. F., Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium, Genome research, vol. 16, no. 10, pp. 1252-1261, 2006.
R. L. Small and Wendel, J. F., Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium), Molecular biology and evolution, vol. 19, no. 5, pp. 597-607, 2002.
A. J. Reinisch, Dong, J. - M., Brubaker, C. L., Stelly, D. M., Wendel, J. F., and Paterson, A. H., A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome., Genetics, vol. 138, no. 3, pp. 829-847, 1994.
J. I. Davis, Simmons, M. P., Stevenson, D. W., and Wendel, J. F., Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences, Systematic Biology, vol. 47, no. 2, pp. 282-310, 1998.
L. Gong, Olson, M., and Wendel, J. F., Cytonuclear evolution of rubisco in four allopolyploid lineages, Molecular biology and evolution, vol. 31, no. 10, pp. 2624-2636, 2014.
L. Gong, Salmon, A., Yoo, M. - J., Grupp, K. K., Wang, Z., Paterson, A. H., and Wendel, J. F., The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco, Molecular biology and evolution, vol. 29, no. 10, pp. 3023-3036, 2012.
J. F. Wendel and Parks, C. R., Cultivar identification in Camellia japonica L. using allozyme polymorphisms., Journal American Society for Horticultural Science, 1983.
J. F. Wendel and Parks, C. R., Cultivar characterization and nomenclatural clarification by protein electrophoresis in Camellia japonica L, American Camellia Yearbook (USA), 1982.
R. Cronn and Wendel, J. F., Cryptic trysts, genomic mergers, and plant speciation, New Phytologist, vol. 161, no. 1, pp. 133-142, 2004.
R. Cronn, Small, R. L., Haselkorn, T., and Wendel, J. F., Cryptic repeated genomic recombination during speciation in Gossypium gossypioides, Evolution, vol. 57, no. 11, pp. 2475-2489, 2003.
I. Álvarez and Wendel, J. F., Cryptic interspecific introgression and genetic differentiation within Gossypium aridum (Malvaceae) and its relatives, Evolution, vol. 60, no. 3, pp. 505-517, 2006.
K. M. Olsen and Wendel, J. F., Crop plants as models for understanding plant adaptation and diversification, Frontiers in plant science, vol. 4, 2013.
R. L. Small and Wendel, J. F., Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium), Genetics, vol. 155, no. 4, pp. 1913-1926, 2000.
P. L. VanderWiel, Voytas, D. F., and Wendel, J. F., Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.), Journal of molecular evolution, vol. 36, no. 5, pp. 429-447, 1993.
L. E. Flagel, Chen, L., Chaudhary, B., and Wendel, J. F., Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton, Journal of heredity, p. esp003, 2009.
D. J. Crawford, Doyle, J. J., Soltis, D. E., Soltis, P. S., and Wendel, J. F., Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology, Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 369, no. 1648, p. 20130341, 2014.
D. J. Crawford, Doyle, J. J., Soltis, D. E., Soltis, P. S., and Wendel, J. F., Contemporary and future studies in plant speciation, 2014.
T. Seelanan, Schnabel, A., and Wendel, J. F., Congruence and consensus in the cotton tribe (Malvaceae), Systematic Botany, pp. 259-290, 1997.
L. Gong, Kakrana, A., Arikit, S., Meyers, B. C., and Wendel, J. F., Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species, Genome biology and evolution, vol. 5, no. 12, pp. 2449-2459, 2013.
B. S. Gaut, Clark, L. G., Wendel, J. F., and Muse, S. V., Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae)., Molecular Biology and Evolution, vol. 14, no. 7, pp. 769-777, 1997.
C. L. Brubaker, Paterson, A. H., and Wendel, J. F., Comparative genetic mapping of allotetraploid cotton and its diploid progenitors, Genome, vol. 42, no. 2, pp. 184-203, 1999.
M. - J. Yoo and Wendel, J. F., Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome, 2014.
W. L. Applequist, Cronn, R., and Wendel, J. F., Comparative development of fiber in wild and cultivated cotton, Evolution & development, vol. 3, no. 1, pp. 3-17, 2001.
L. Gong, Masonbrink, R. E., Grover, C. E., Renny-Byfield, S., and Wendel, J. F., A Cluster of Recently Inserted Transposable Elements Associated with siRNAs in, The Plant Genome, 2015.
A. Schnabel and Wendel, J. F., Cladistic biogeography of Gleditsia (Leguminosae) based on ndhF and rpl16 chloroplast gene sequences, American Journal of Botany, vol. 85, no. 12, pp. 1753-1765, 1998.
R. E. Masonbrink, Gallagher, J. P., Jareczek, J. J., Renny-Byfield, S., Grover, C. E., Gong, L., and Wendel, J. F., CenH3 evolution in diploids and polyploids of three angiosperm genera, BMC plant biology, vol. 14, no. 1, p. 383, 2014.
C. E. Grover, Gallagher, J. P., and Wendel, J. F., Candidate Gene Identification of Flowering Time Genes in Cotton, The Plant Genome, 2015.
K. M. Olsen and Wendel, J. F., A bountiful harvest: genomic insights into crop domestication phenotypes, Annual Review of Plant Biology, vol. 64, pp. 47-70, 2013.
D. A. Baum, Small, R. L., and Wendel, J. F., Biogeography and floral evolution of Baobabs Adansonia, Bombacaceae as inferred from multiple data sets, Systematic Biology, vol. 47, no. 2, pp. 181-207, 1998.
J. F. Wendel, Schnabel, A., and Seelanan, T., Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium), Proceedings of the National Academy of Sciences, vol. 92, no. 1, pp. 280-284, 1995.
C. L. Brubaker, Koontz, J. A., and Wendel, J. F., Bidirectional cytoplasmic and nuclear introgression in the New World cottons, Gossypium barbadense and G. hirsutum (Malvaceae), American Journal of Botany, pp. 1203-1208, 1993.
W. Zhang, Wendel, J. F., and Clark, L. G., Bamboozled again! Inadvertent isolation of fungal rDNA sequences from bamboos (Poaceae: Bambusoideae), Molecular phylogenetics and evolution, vol. 8, no. 2, pp. 205-217, 1997.
C. E. Grover, Grupp, K. K., Wanzek, R. J., and Wendel, J. F., Assessing the monophyly of polyploid Gossypium species, Plant systematics and evolution, vol. 298, no. 6, pp. 1177-1183, 2012.
J. F. Doebley and Wendel, J. F., Application of RFLPs to plant systematics, Development and application of molecular markers to problems in plant genetics. New York, USA Cold Spring Harbor Laboratories, pp. 57-67, 1989.
J. F. Wendel and Parks, C. R., Application of electrophoresis to taxonomic and breeding problems in Camellias, Camellia J, vol. 34, no. 4, pp. 39-41, 1979.

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