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C. Li, Sun, X., Conover, J. L., Zhang, Z., Wang, J., Wang, X., Deng, X., Wang, H., Liu, B., and Wendel, J. F., “Cytonuclear coevolution following homoploid hybrid speciation in Aegilops tauschii”, Molecular Biology and Evolution, 2018.
L. Gong, Salmon, A., Yoo, M. - J., Grupp, K. K., Wang, Z., Paterson, A. H., and Wendel, J. F., “The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco”, Molecular biology and evolution, vol. 29, no. 10, pp. 3023-3036, 2012.
L. Gong, Olson, M., and Wendel, J. F., “Cytonuclear evolution of rubisco in four allopolyploid lineages”, Molecular biology and evolution, vol. 31, no. 10, pp. 2624-2636, 2014.
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J. I. Davis, Simmons, M. P., Stevenson, D. W., and Wendel, J. F., “Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences”, Systematic Biology, vol. 47, no. 2, pp. 282-310, 1998.
D. M. Debinski, “DB Lindenmayer, Large-scale landscape experiments: lessons from Tumut”, Landscape Ecology, vol. 25, no. 1, pp. 161-162, 2010.
A. N. Pairett and Serb, J. M., “De novo assembly and characterization of two transcriptomes reveal multiple light-mediated functions in the scallop eye (Bivalvia: Pectinidae)”, 2013.
A. N. Pairett, Serb, J. M., and Foulkes, N. S., “De Novo Assembly and Characterization of Two Transcriptomes Reveal Multiple Light-Mediated Functions in the Scallop Eye”, 2013.
H. U. I. Yu, Nason, J. D., Zhang, L., Zheng, L., Wu, W., and Ge, X., “De novo transcriptome sequencing in Ficus hirta Vahl.(Moraceae) to investigate gene regulation involved in the biosynthesis of pollinator attracting volatiles”, Tree Genetics & Genomes, vol. 11, no. 5, pp. 1-9, 2015.
K. Schiffers, Schurr, F. M., Tielbörger, K., Urbach, C., Moloney, K., and Jeltsch, F., “Dealing with virtual aggregation–a new index for analysing heterogeneous point patterns”, Ecography, vol. 31, no. 5, pp. 545-555, 2008.
A. Ito, Inatomi, M., Huntzinger, D. N., Schwalm, C., Michalak, A. M., Cook, R., King, A. W., Mao, J., Wei, Y., and W Post, M., “Decadal trends in the seasonal-cycle amplitude of terrestrial CO2 exchange resulting from the ensemble of terrestrial biosphere models”, Tellus B, vol. 68, 2016.
D. A. Warner, Miller, D. A. W., Bronikowski, A. M., and Janzen, F. J., “Decades of field data reveal that turtles senesce in the wild”, Proceedings of the National Academy of Sciences, p. 201600035, 2016.
D. M. Debinski and Kelly, L., “Decline of Iowa populations of the regal fritillary(Speyeria idalia) Drury”, Journal of the iowa academy of science, vol. 105, no. 1, pp. 16-22, 1998.
C. R. Olson, Vleck, C. M., and Adams, D. C., “Decoupling morphological development from growth in periodically cooled zebra finch embryos”, Journal of morphology, vol. 269, no. 7, pp. 875-883, 2008.
E. C. Fricke, Tewksbury, J. J., and Rogers, H. S., “Defaunation leads to interaction deficits, not interaction compensation, in an island seed dispersal network”, Global Change Biology, 2017.
B. Mortensen, Abbott, K. C., and Danielson, B., “Defensive tradeoffs are not prerequisites to plant diversity in a two species model”, Oikos, 2017.
G. A. Cordero, Quinteros, K., and Janzen, F. J., “Delayed trait development and the convergent evolution of shell kinesis in turtles”, Proc. R. Soc. B, vol. 285, no. 1888, p. 20181585, 2018.
I. L. C. Oliveira, Matos, A. O., Silva, C., Carvalho, M. Luiza S., Tyrrell, C. D., Clark, L. G., and R Oliveira, P., “Delving deeper into the phylogenetics of the herbaceous bamboos (Poaceae, Bambusoideae, Olyreae): evaluation of generic boundaries within the Parodiolyra/Raddiella clade uncovers a new genus”, Botanical Journal of the Linnean Society, 2019.
W. A. N. G. Kunbo, Wendel, J. F., and Jinping, H. U. A., “Designations for individual genomes and chromosomes in Gossypium”, Journal of Cotton Research, vol. 1, no. 1, p. 3, 2018.
R. C. Schultz, Tufekcioglu, A., Isenhart, T. M., Colletti, J. P., Raich, J. W., and Simpkins, W. W., “Designing Riparian Buffers to Improve their Function”, 2005.
A. J. Reinisch, Dong, J. - M., Brubaker, C. L., Stelly, D. M., Wendel, J. F., and Paterson, A. H., “A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome.”, Genetics, vol. 138, no. 3, pp. 829-847, 1994.
D. Ortiz, Palmer, J., and Wilkinson, G., “Detecting changes in statistical indicators of resilience prior to algal blooms in shallow eutrophic lakes”, Ecosphere, vol. 11, no. 10, p. e03200, 2020.
F. Jeltsch, Moloney, K., and Milton, S. J., “Detecting process from snapshot pattern: lessons from tree spacing in the southern Kalahari”, Oikos, pp. 451-466, 1999.
F. Janzen, “The detection and quantification of aquatic reptilian environmental DNA”, Iowa State University, 2017.
K. A. Moloney, “Determining process through pattern: reality or fantasy?”, in Patch Dynamics, Springer Berlin Heidelberg, 1993, pp. 61-69.
L. Zheng, Nason, J. D., Liang, D., Ge, X., and Yu, H. U. I., “Development and Characterization of Microsatellite Loci for Ficus hirta (Moraceae)”, Applications in Plant Sciences, vol. 3, no. 7, p. 1500034, 2015.
E. - W. Tian, Yu, H. U. I., Zhang, D. - Y., and Nason, J. D., “Development of microsatellite loci for Blastophaga javana (Agaonidae), the pollinating wasp of Ficus hirta (Moraceae)”, American journal of botany, vol. 98, no. 2, pp. e41-e43, 2011.
E. M. Rehm, Chojnacki, J., Rogers, H. S., and Savidge, J. A., “Differences among avian frugivores in seed dispersal to degraded habitats”, Restoration Ecology, 2017.
L. M. Martin and Wilsey, B. J., “Differences in beta diversity between exotic and native grasslands vary with scale along a latitudinal gradient”, 2015.
K. Halverson, Heard, S. B., Nason, J. D., and III, J. O. Stireman, “Differential attack on diploid, tetraploid, and hexaploid Solidago altissima L. by five insect gallmakers”, Oecologia, vol. 154, no. 4, pp. 755-761, 2008.
R. L. Small and Wendel, J. F., “Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium)”, Molecular biology and evolution, vol. 19, no. 5, pp. 597-607, 2002.
J. S. Hawkins, Kim, H. R., Nason, J. D., Wing, R. A., and Wendel, J. F., “Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium”, Genome research, vol. 16, no. 10, pp. 1252-1261, 2006.
J. A. Vogel, Koford, R. R., and Debinski, D. M., “Direct and indirect responses of tallgrass prairie butterflies to prescribed burning”, Journal of Insect Conservation, vol. 14, no. 6, pp. 663-677, 2010.
M. L. Cayuela, Aguilera, E., Sanz-Cobena, A., Adams, D. C., Abalos, D., Barton, L., Ryals, R., Silver, W. L., Alfaro, M. A., and Pappa, V. A., “Direct nitrous oxide emissions in Mediterranean climate cropping systems: Emission factors based on a meta-analysis of available measurement data”, Agriculture, Ecosystems & Environment, 2016.
J. M. Serb, “Discovery of genetically distinct sympatric lineages in the freshwater mussel Cyprogenia aberti (Bivalvia: Unionidae)”, Journal of Molluscan Studies, vol. 72, no. 4, pp. 425-434, 2006.
J. D. Nason, Aldrich, P. R., and Hamrick, J. L., “Dispersal and the dynamics of genetic structure in fragmented tropical tree populations”, Tropical Forest Remnants: Ecology Management and Conservation of Fragmented Communities. University of Chicago Press, Chicago, Illinois, pp. 304-320, 1997.
X. P. Zhao, Si, Y., Hanson, R. E., Crane, C. F., Price, H. J., Stelly, D. M., Wendel, J. F., and Paterson, N. H., “Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton (vol 8, pg 479, 1998)”, GENOME RESEARCH, vol. 8, no. 6, pp. 682-682, 1998.
X. -ping Zhao, Si, Y., Hanson, R. E., Crane, C. F., H Price, J., Stelly, D. M., Wendel, J. F., and Paterson, A. H., “Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton”, Genome Research, vol. 8, no. 5, pp. 479-492, 1998.
D. M. Stelly, Wendel, J. F., and Paterson, A. H., “Dispersed Repetitive DNA Has Spread to New Genomes Since Polyploid Formation in Cotton Xin-ping Zhao, Yang Si, Robert E. Hanson, 2 Charles F. Crane, 2 H. James Price, 2”, Genome Research, vol. 8, pp. 479-492, 1998.
J. F. Wendel and Parks, C. R., “Distorted segregation and linkage of alcohol dehydrogenase genes in Camellia japonica L.(Theacease)”, Biochemical genetics, vol. 22, no. 7-8, pp. 739-748, 1984.
L. Jesse, Collyer, M., Moloney, K., and Obrycki, J. J., “Distribution of Megastigmus aculeatus (Hymenoptera: Torymidae) and the levels of seed predation of Rosa multiflora (Rosaceae)”, Weed Biology and Management, vol. 13, no. 3, pp. 79-88, 2013.
A. D. Keiser, Knoepp, J. D., and Bradford, M. A., “Disturbance decouples biogeochemical cycles across forests of the southeastern US”, Ecosystems, pp. 1-12, 2015.
D. C. Adams, “Divergence of trophic morphology and resource use among populations of Plethodon cinereus and P. hoffmani in Pennsylvania”, in The biology of Plethodontid salamanders, Springer US, 2000, pp. 383-394.
Q. Pan, Wendel, J. F., and Fluhr, R., “Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes”, Journal of molecular evolution, vol. 50, no. 3, pp. 203-213, 2000.
P. Bilinski, Han, Y., Hufford, M. B., Lorant, A., Zhang, P., Jiang, J., and Ross-Ibarra, J., “Diverse origins of high copy tandem repeats in grass genomes”, PeerJ Preprints, 2016.
V. D. Picasso, E Brummer, C., Liebman, M., Dixon, P. M., and Wilsey, B. J., “Diverse perennial crop mixtures sustain higher productivity over time based on ecological complementarity”, Renewable Agriculture and Food Systems, vol. 26, no. 04, pp. 317-327, 2011.
L. L. Hinze, Hulse-Kemp, A. M., Wilson, I. W., Zhu, Q. - H., Llewellyn, D. J., Taylor, J. M., Spriggs, A., Fang, D. D., Ulloa, M., and Burke, J. J., “Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array”, BMC Plant Biology, vol. 17, no. 1, p. 37, 2017.
L. Gutiérrez, Nason, J. D., and Jannink, J. - L., “Diversity and mega-targets of selection from the characterization of a barley collection”, Crop science, vol. 49, no. 2, pp. 483-497, 2009.
F. Colchero, Jones, O. R., Conde, D. A., Hodgson, D., Zajitschek, P., Schmidt, B. R., Malo, A. F., Alberts, S. C., Becker, P. H., and Bouwhuis, S., “The diversity of population responses to environmental change”, Ecology Letters, 2018.
F. I. Isbell, Losure, D. A., Yurkonis, K. A., and Wilsey, B. J., “Diversity–productivity relationships in two ecologically realistic rarity–extinction scenarios”, Oikos, vol. 117, no. 7, pp. 996-1005, 2008.
R. Whitkus, Doebley, J., and Wendel, J. F., “DNA-based markers in plants”, Nuclear DNA markers in systematics and evolution. Kluwer, Amsterdam, pp. 116-141, 1994.

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