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Book Chapter
J. F. Wendel, Flagel, L. E., and Adams, K. L., Jeans, genes, and genomes: cotton as a model for studying polyploidy, in Polyploidy and genome evolution, Springer Berlin Heidelberg, 2012, pp. 181-207.
Journal Article
L. E. Flagel, Chen, L., Chaudhary, B., and Wendel, J. F., Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton, Journal of heredity, p. esp003, 2009.
L. E. Flagel, Wendel, J. F., and Udall, J. A., Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton, BMC genomics, vol. 13, no. 1, p. 302, 2012.
J. J. Doyle, Flagel, L. E., Paterson, A. H., Rapp, R. A., Soltis, D. E., Soltis, P. S., and Wendel, J. F., Evolutionary genetics of genome merger and doubling in plants, Annual review of genetics, vol. 42, pp. 443-461, 2008.
L. E. Flagel and Wendel, J. F., Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation, New Phytologist, vol. 186, no. 1, pp. 184-193, 2010.
L. E. Flagel and Wendel, J. F., Gene duplication and evolutionary novelty in plants, New Phytologist, vol. 183, no. 3, pp. 557-564, 2009.
Y. Bao, Hu, G., Flagel, L. E., Salmon, A., Bezanilla, M., Paterson, A. H., Wang, Z., and Wendel, J. F., Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium), Proceedings of the National Academy of Sciences, vol. 108, no. 52, pp. 21152-21157, 2011.
D. S. Senchina, Flagel, L. E., Wendel, J. F., and Kohut, M. L., Phenetic comparison of sevenEchinacea species based on immunomodulatory characteristics, Economic botany, vol. 60, no. 3, pp. 205-211, 2006.
L. E. Flagel, Rapp, R. A., Grover, C. E., Widrlechner, M. P., Hawkins, J., Grafenberg, J. L., Álvarez, I., Chung, G. Young, and Wendel, J. F., Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea, American journal of botany, vol. 95, no. 6, pp. 756-765, 2008.
S. E. McGaugh, Bronikowski, A. M., Kuo, C. - H., Reding, D. M., Addis, E. A., Flagel, L. E., Janzen, F. J., and Schwartz, T. S., Rapid molecular evolution across amniotes of the IIS/TOR network, Proceedings of the National Academy of Sciences, p. 201419659, 2015.
J. A. Udall, Flagel, L. E., Cheung, F., Woodward, A. W., Hovav, R., Rapp, R. A., Swanson, J. M., Lee, J. J., Gingle, A. R., and Nettleton, D., Spotted cotton oligonucleotide microarrays for gene expression analysis, Bmc Genomics, vol. 8, no. 1, p. 81, 2007.