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L. ‐F. Li, Liu, B., Olsen, K. M., and Wendel, J. F., A re‐evaluation of the homoploid hybrid origin of Aegilops tauschii, the donor of the wheat D‐subgenome, New Phytologist, 2015.
C. L. Brubaker and Wendel, J. F., RFLP diversity in cotton, Genetic improvement of cotton, emerging technologies. Science Publisher, Inc, Enfield, NH, pp. 81-101, 2001.
I. Álvarez and Wendel, J. F., Ribosomal ITS sequences and plant phylogenetic inference, Molecular phylogenetics and evolution, vol. 29, no. 3, pp. 417-434, 2003.
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C. R. Parks, Wendel, J. F., Sewell, M. M., and Qiu, Y. - L., The significance of allozyme variation and introgression in the Liriodendron tulipifera complex (Magnoliaceae), American Journal of Botany, pp. 878-889, 1994.
R. Cronn and Wendel, J. F., Simple methods for isolating homoeologous loci from allopolyploid genomes, Genome, vol. 41, no. 6, pp. 756-762, 1998.
J. F. Wendel, Edwards, M. D., and Stuber, C. W., SOME GENETIC CONSEQUENCES OF REUNITING 2 RACIALLY DIVERGENT POPULATIONS OF ZEA-MAYS-L, AMERICAN JOURNAL OF BOTANY, vol. 72, no. 6. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 879-879, 1985.
C. L. Brubaker and Wendel, J. F., On the specific status of Gossypium lanceolatum Todaro, Genetic Resources and Crop Evolution, vol. 40, no. 3, pp. 165-170, 1993.
C. R. Parks, Wendel, J. F., Sewell, M. M., and He, S. - A., STUDIES OF GENETIC-DIVERGENCE IN THE GENUS LIRIODENDRON (MAGNOLIACEAE), AMERICAN JOURNAL OF BOTANY, vol. 73, no. 5. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 686-687, 1986.
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A. Salmon, Udall, J. A., Jeddeloh, J. A., and Wendel, J. F., Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton, G3: Genes| Genomes| Genetics, vol. 2, no. 8, pp. 921-930, 2012.
C. E. Grover, Salmon, A., and Wendel, J. F., Targeted sequence capture as a powerful tool for evolutionary analysis1, American journal of botany, vol. 99, no. 2, pp. 312-319, 2012.
J. F. Wendel and Grover, C. E., Taxonomy and Evolution of the Cotton Genus, Gossypium, Cotton, no. agronmonogr57, 2015.
A. E. Percival, Wendel, J. F., and Stewart, J. M., Taxonomy and germplasm resources, Cotton: Origin, History, Technology, and Production. WC Smith and JT Cothren eds. John Wiley and Sons, Inc., New York, NY, 1999.
C. E. Grover, Hawkins, J. S., and Wendel, J. F., Tobacco genomes quickly go up in smoke, New Phytologist, vol. 175, no. 4, pp. 599-602, 2007.
R. L. Small, Ryburn, J. A., Cronn, R. C., Seelanan, T., and Wendel, J. F., The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group, American Journal of Botany, vol. 85, no. 9, pp. 1301-1315, 1998.
J. A. Rudgers, Strauss, S. Y., and Wendel, J. F., Trade-offs among anti-herbivore resistance traits: insights from Gossypieae (Malvaceae), American Journal of Botany, vol. 91, no. 6, pp. 871-880, 2004.
R. Hovav, Faigenboim-Doron, A., Kadmon, N., Hu, G., Zhang, X., Gallagher, J. P., and Wendel, J. F., A Transcriptome Profile for Developing Seed of Polyploid Cotton, The Plant Genome, vol. 8, no. 1, 2015.
R. E. Hanson, M Islam-Faridi, N., Crane, C. F., Zwick, M. S., Czeschin, D. G., Wendel, J. F., McKnight, T. D., H Price, J., and Stelly, D. M., Ty1-copia-retrotransposon behavior in a polyploid cotton, Chromosome Research, vol. 8, no. 1, pp. 73-76, 2000.

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