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E. K. Moody and Lozano‐Vilano, Mde Lourdes, Predation drives morphological convergence in the Gambusia panuco species group among lotic and lentic habitats, Journal of evolutionary biology, 2017.
J. M. Orlofske, Ohnesorg, W. J., and Debinski, D. M., Potential terrestrial arthropod indicators for tallgrass prairie restoration in Iowa, Ecological Restoration, vol. 28, no. 3, pp. 250-253, 2010.
A. Lorant, Perdersen, S., Holst, I., Hufford, M. B., Winter, K., Piperno, D., and Ross-Ibarra, J., The Potential Role of Genetic Assimilation during Maize Domestication, bioRxiv, p. 105940, 2017.
S. Salvidio, Crovetto, F., and Adams, D. C., Potential rapid evolution of foot morphology in Italian plethodontid salamanders (Hydromantes strinatii) following the colonization of an artificial cave, Journal of Evolutionary Biology, 2015.
S. Salvidio, Crovetto, F., and Adams, D. C., Potential rapid evolution of foot morphology in Italian plethodontid salamanders (Hydromantes strinatii) following the colonization of an artificial cave, Journal of evolutionary biology, 2015.
J. W. Raich, Rastetter, E. B., Melillo, J. M., Kicklighter, D. W., Steudler, P. A., Peterson, B. J., Grace, A. L., Moore, III, B., and Vorosmarty, C. J., Potential net primary productivity in South America: Application of a global model, Ecol. Appl, vol. 1, pp. 399-429, 1991.
T. J. Hovick, Miller, J. R., Koford, R. R., Engle, D. M., and Debinski, D. M., Postfledging survival of grasshopper sparrows in grasslands managed with fire and grazing, The Condor, vol. 113, no. 2, pp. 429-437, 2011.
M. Bohlke and Wendel, J. F., A possible hybrid in the genus Hieracium., 1976.
D. C. Adams, A Possible Case of Character Displacement, The Biology of Plethodontid Salamanders, p. 383, 2000.
A. P. Kuester, Jones, R. W., Sappington, T. W., Kim, K. Seok, Barr, N. B., Roehrdanz, R. L., Senechal, P., and Nason, J. D., Population structure and genetic diversity of the boll weevil (Coleoptera: Curculionidae) on Gossypium in North America, Annals of the Entomological Society of America, vol. 105, no. 6, pp. 902-916, 2012.
R. J. Dyer and Nason, J. D., Population graphs: the graph theoretic shape of genetic structure, Molecular Ecology, vol. 13, no. 7, pp. 1713-1727, 2004.
A. Sethuraman, Janzen, F. J., and Obrycki, J., Population genetics of the predatory lady beetle Hippodamia convergens, Biological Control, vol. 84, pp. 1-10, 2015.
L. L. Hinze, Kresovich, S., Nason, J. D., and Lamkey, K. R., Population genetic diversity in a maize reciprocal recurrent selection program, Crop science, vol. 45, no. 6, pp. 2435-2442, 2005.
T. Wiegand, Moloney, K. A., and Milton, S. J., Population dynamics, disturbance, and pattern evolution: identifying the fundamental scales of organization in a model ecosystem, The American Naturalist, vol. 152, no. 3, pp. 321-337, 1998.
J. F. Wendel and Cronn, R. C., Polyploidy and the evolutionary history of cotton, Advances in agronomy, vol. 78, pp. 139-186, 2003.
K. L. Adams and Wendel, J. F., Polyploidy and genome evolution in plants, Current opinion in plant biology, vol. 8, no. 2, pp. 135-141, 2005.
J. A. Udall and Wendel, J. F., Polyploidy and crop improvement, Crop Science, vol. 46, no. Supplement_1, p. S-3-S-14, 2006.
M. L. Ainouche and Wendel, J. F., Polyploid speciation and genome evolution: Lessons from recent allopolyploids, in Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life, Springer International Publishing, 2014, pp. 87-113.
B. Liu, Brubaker, C. L., Mergeai, G., Cronn, R. C., and Wendel, J. F., Polyploid formation in cotton is not accompanied by rapid genomic changes, Genome, vol. 44, no. 3, pp. 321-330, 2001.
E. Ann Stacy, Hamrick, J. L., Nason, J. D., Hubbell, S. P., Foster, R. B., and Condit, R., Pollen dispersal in low-density populations of three neotropical tree species, American Naturalist, pp. 275-298, 1996.
D. D. Houston, R Evans, P., and Shiozawa, D. K., Pluvial Drainage Patterns and Holocene Desiccation Influenced the Genetic Architecture of Relict Dace, Relictus solitarius (Teleostei: Cyprinidae), PloS one, vol. 10, no. 9, p. e0138433, 2015.
D. C. Adams, Plethodon hoffmani (Valley and Ridge Salamander). Predation, Herpetological Review, vol. 30, p. 160, 1999.
L. H. Rieseberg and Wendel, J. F., Plant speciation–rise of the poor cousins, New Phytologist, vol. 161, no. 1, pp. 3-8, 2004.
B. J. Wilsey, Plant responses to elevated atmospheric CO 2 among terrestrial biomes, Oikos, pp. 201-206, 1996.
I. J. Leitch, Greilhuber, J., Dolezel, J., and Wendel, J. F., Plant Genome Diversity Volume 2: Physical Structure, Behaviour and Evolution of Plant Genomes, vol. 2. Springer Science & Business Media, 2012.
J. Greilhuber, Dolezel, J., Leitch, I. J., and Wendel, J. F., Plant Genome Diversity: Vol. 1: Plant Genomes, Their Residents, and Their Evolutionary Dynamics. Springer, 2012.
W. H Polley, Isbell, F. I., and Wilsey, B. J., Plant functional traits improve diversity‐based predictions of temporal stability of grassland productivity, Oikos, vol. 122, no. 9, pp. 1275-1282, 2013.
D. Craven, Isbell, F., Manning, P., Connolly, J., Bruelheide, H., Ebeling, A., Roscher, C., van Ruijven, J., Weigelt, A., and Wilsey, B., Plant diversity effects on grassland productivity are robust to both nutrient enrichment and drought, Phil. Trans. R. Soc. B, vol. 371, no. 1694, p. 20150277, 2016.
B. A Duthie and Nason, J. D., Plant connectivity underlies plant‐pollinator‐exploiter distributions in Ficus petiolaris and associated pollinating and non‐pollinating fig wasps, Oikos, 2016.
J. M. Jandt and Toth, A. L., Physiological and Genomic Mechanisms of Social Organization in Wasps (Family: Vespidae), Advances in Insect Physiology, 2015.
D. Badenhorst, Hillier, L. W., Literman, R., Montiel, E. E., Radhakrishnan, S., Shen, Y., Minx, P., Janes, D., Warren, W. C., and Edwards, S. V., Physical mapping and refinement of the painted turtle genome (Chrysemys picta) inform amniote genome evolution and challenges turtle-bird chromosomal conservation., Genome biology and evolution, 2015.
E. H. Crane, Farrar, D. R., and Wendel, J. F., Phylogeny of the Vittariaceae: convergent simplification leads to a polyphyletic Vittaria, American Fern Journal, pp. 283-305, 1995.
I. Álvarez, Cronn, R., and Wendel, J. F., Phylogeny of the New World diploid cottons (Gossypium L., Malvaceae) based on sequences of three low-copy nuclear genes, Plant Systematics and Evolution, vol. 252, no. 3-4, pp. 199-214, 2005.
L. G. Clark, Zhang, W., and Wendel, J. F., A phylogeny of the grass family (Poaceae) based on ndhF sequence data, Systematic Botany, pp. 436-460, 1995.
D. C. Campbell, Serb, J. M., Buhay, J. E., Roe, K. J., Minton, R. L., and Lydeard, C., Phylogeny of North American amblemines (Bivalvia, Unionoida): prodigious polyphyly proves pervasive across genera, Invertebrate Biology, vol. 124, no. 2, pp. 131-164, 2005.
R. L. Small and Wendel, J. F., Phylogeny, duplication, and intraspecific variation of Adh sequences in new world diploid cottons (Gossypium L., Malvaceae), Molecular Phylogenetics and Evolution, vol. 16, no. 1, pp. 73-84, 2000.
S. Vincent Burke, Lin, C. - S., Wysocki, W. Patrick, Clark, L. G., and Duvall, M. R., Phylogenomics and plastome evolution of tropical forest grasses (Leptaspis, Streptochaeta: Poaceae), Frontiers in Plant Science, vol. 7, p. 1993, 2016.
M. R. Duvall, Fisher, A. E., J Columbus, T., Ingram, A. L., Wysocki, W. P., Burke, S. V., Clark, L. G., Kelchner, S. A., and Edwards, E., Phylogenomics and Plastome Evolution of the Chloridoid Grasses (Chloridoideae: Poaceae), International Journal of Plant Sciences, vol. 177, no. 3, pp. 235-246, 2016.
A. Kaliontzopoulou and Adams, D. C., Phylogenies, the Comparative Method, and the Conflation of Tempo and Mode., Systematic biology, 2015.
J. F. Wendel and Albert, V. A., Phylogenetics of the cotton genus (Gossypium): character-state weighted parsimony analysis of chloroplast-DNA restriction site data and its systematic and biogeographic implications, Systematic Botany, pp. 115-143, 1992.
L. Betancur, Singh, B., Rapp, R. A., Wendel, J. F., M Marks, D., Roberts, A. W., and Haigler, C. H., Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber, Journal of integrative plant biology, vol. 52, no. 2, pp. 205-220, 2010.
J. M. Serb and Puslednik, L., Phylogenetic relationships of the pectinidae and the evolution of sexual reproductive modes: How important is dispersal life history?, JOURNAL OF SHELLFISH RESEARCH, vol. 26, no. 4. NATL SHELLFISHERIES ASSOC C/O DR. SANDRA E. SHUMWAY, UNIV CONNECTICUT, 1080 SHENNECOSSETT RD, GROTON, CT 06340 USA, pp. 1344-1345, 2007.
A. Schnabel, McDonel, P. E., and Wendel, J. F., Phylogenetic relationships in Gleditsia (Leguminosae) based on ITS sequences, American journal of botany, vol. 90, no. 2, pp. 310-320, 2003.
C. P. Ceballos, Adams, D. C., Iverson, J. B., and Valenzuela, N., Phylogenetic patterns of sexual size dimorphism in turtles and their implications for Rensch’s rule, Evolutionary Biology, vol. 40, no. 2, pp. 194-208, 2013.
S. Hartmann, Nason, J. D., and Bhattacharya, D., Phylogenetic origins of Lophocereus (Cactaceae) and the senita cactus–senita moth pollination mutualism, American Journal of Botany, vol. 89, no. 7, pp. 1085-1092, 2002.
L. E. Flagel, Rapp, R. A., Grover, C. E., Widrlechner, M. P., Hawkins, J., Grafenberg, J. L., Álvarez, I., Chung, G. Young, and Wendel, J. F., Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea, American journal of botany, vol. 95, no. 6, pp. 756-765, 2008.
D. C. Adams, Phylogenetic meta‐analysis, Evolution, vol. 62, no. 3, pp. 567-572, 2008.
C. Grover, Hawkins, J., and Wendel, J. F., Phylogenetic insights into the pace and pattern of plant genome size evolution, 2008.
J. F. Wendel and Doyle, J. J., Phylogenetic incongruence: window into genome history and molecular evolution, in Molecular systematics of plants II, Springer US, 1998, pp. 265-296.
L. Attigala, Wysocki, W. P., Duvall, M. R., and Clark, L. G., Phylogenetic estimation and morphological evolution of Arundinarieae (Bambusoideae: Poaceae) based on plastome phylogenomic analysis, Molecular Phylogenetics and Evolution, 2016.