Publications

Export 1017 results:
2014
M. Yoon Chung, Nason, J. D., Lopez-Pujol, J., Yamashiro, T., Yang, B. - Y., Luo, Y. - B., and Chung, M. Gi, Genetic consequences of fragmentation on populations of the terrestrial orchid Cymbidium goeringii, Biological Conservation, vol. 170, pp. 222-231, 2014.
C. Xu, Bai, Y., Lin, X., Zhao, N., Hu, L., Gong, Z., Wendel, J. F., and Liu, B., Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies, Molecular biology and evolution, vol. 31, no. 5, pp. 1066-1076, 2014.
A. N. Pairett and Serb, J. M., Identifying the molecular link between photosensitive tissues and the eyes of the bay scallop, Argopecten irradians., INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 54. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E159-E159, 2014.
W. H Polley, Derner, J. D., Jackson, R. B., Wilsey, B. J., and Fay, P. A., Impacts of climate change drivers on C4 grassland productivity: scaling driver effects through the plant community, Journal of experimental botany, p. eru009, 2014.
B. J. Wilsey, Daneshgar, P. P., Hofmockel, K., and H Polley, W., Invaded grassland communities have altered stability‐maintenance mechanisms but equal stability compared to native communities, Ecology letters, vol. 17, no. 1, pp. 92-100, 2014.
R. N. Harr, Morton, L. Wright, Rusk, S. R., Engle, D. M., Miller, J. R., and Debinski, D., Landowners' perceptions of risk in grassland management: woody plant encroachment and prescribed fire, Ecology and Society, vol. 19, no. 2, p. 41, 2014.
J. E. Coate, Buggs, R. J. A., Wendel, J. F., Doyle, J. J., Soltis, D. E., and Soltis, P. S., The legacy of diploid progenitors in allopolyploid gene, 2014.
R. J. A. Buggs, Wendel, J. F., Doyle, J. J., Soltis, D. E., Soltis, P. S., and Coate, J. E., The legacy of diploid progenitors in allopolyploid gene expression patterns, Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 369, no. 1648, p. 20130354, 2014.
M. A. Condon, Scheffer, S. J., Lewis, M. L., Wharton, R., Adams, D. C., and Forbes, A. A., Lethal interactions between parasites and prey increase niche diversity in a tropical community, Science, vol. 343, no. 6176, pp. 1240-1244, 2014.
M. L. Collyer, Sekora, D. J., and Adams, D. C., A method for analysis of phenotypic change for phenotypes described by high-dimensional data, Heredity, 2014.
D. C. Adams, A METHOD FOR ASSESSING PHYLOGENETIC LEAST SQUARES MODELS FOR SHAPE AND OTHER HIGH‐DIMENSIONAL MULTIVARIATE DATA, Evolution, vol. 68, no. 9, pp. 2675-2688, 2014.
C. E. Grover, Zhu, X., Grupp, K. K., Jareczek, J. J., Gallagher, J. P., Szadkowski, E., Seijo, J. G., and Wendel, J. F., Molecular confirmation of species status for the allopolyploid cotton species, Gossypium ekmanianum Wittmack, Genetic Resources and Crop Evolution, vol. 62, no. 1, pp. 103-114, 2014.
G. Mynhardt, Alejandrino, A., Puslednik, L., Corrales, J., and Serb, J. M., Molluscan Studies, Journal of Molluscan Studies, vol. 80, pp. 400-411, 2014.
L. M. Martin and Wilsey, B. J., Native-species seed additions do not shift restored prairie plant communities from exotic to native states, Basic and Applied Ecology, vol. 15, no. 4, pp. 297-304, 2014.
M. L. Ainouche and Wendel, J. F., Polyploid speciation and genome evolution: Lessons from recent allopolyploids, in Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life, Springer International Publishing, 2014, pp. 87-113.
A. C. Kraemer and Adams, D. C., Predator perception of Batesian mimicry and conspicuousness in a salamander, Evolution, vol. 68, no. 4, pp. 1197-1206, 2014.
E. L. Mudrak, Schafer, J. L., Fuentes-Ramirez, A., Holzapfel, C., and Moloney, K. A., Predictive modeling of spatial patterns of soil nutrients related to fertility islands, Landscape ecology, vol. 29, no. 3, pp. 491-505, 2014.
G. Hu, Koh, J., Yoo, M. - J., Pathak, D., Chen, S., and Wendel, J. F., Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.), Planta, vol. 240, no. 6, pp. 1237-1251, 2014.
G. Rivera, Davis, J. N., Godwin, J. C., and Adams, D. C., Repeatability of Habitat-Associated Divergence in Shell Shape of Turtles, Evolutionary Biology, vol. 41, pp. 29-37, 2014.
B. A Duthie, Abbott, K. C., and Nason, J. D., Trade-Offs and Coexistence: A Lottery Model Applied to Fig Wasp Communities, The American Naturalist, vol. 183, no. 6, pp. 826-841, 2014.
B. A Duthie, Abbott, K. C., and Nason, J. D., Trade-offs and coexistence: a lottery model applied to fig wasp communities, The American Naturalist, vol. 183, no. 6, pp. 826-841, 2014.
J. M. Serb, Krause-Porath, A. J., and Pairett, A. N., Uncovering patterns underlying the molecular evolution of non-visual photoreception in molluscs, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 54. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E189-E189, 2014.
D. I. Speiser, M Pankey, S., Zaharoff, A. K., Battelle, B. A., Bracken-Grissom, H. D., Breinholt, J. W., Bybee, S. M., Cronin, T. W., Garm, A., and Lindgren, A. R., Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms, BMC bioinformatics, vol. 15, no. 1, p. 350, 2014.
J. L. Donnelly, Adams, D. C., and Dekker, J., Weedy Adaptation in Setaria spp.: VI. S. faberi Seed hull shape as soil germination signal antenna, arXiv preprint arXiv:1403.7064, 2014.
N. M. Caruso, Sears, M. W., Adams, D. C., and Lips, K. R., Widespread rapid reductions in body size of adult salamanders in response to climate change, Global change biology, vol. 20, no. 6, pp. 1751-1759, 2014.
2013
C. M. Berns and Adams, D. C., Becoming different but staying alike: patterns of sexual size and shape dimorphism in bills of hummingbirds, Evolutionary Biology, vol. 40, no. 2, pp. 246-260, 2013.
B. J. Cardinale, Gross, K., Fritschie, K., Flombaum, P., Fox, J. W., Rixen, C., van Ruijven, J., Reich, P. B., Scherer-Lorenzen, M., and Wilsey, B. J., Biodiversity simultaneously enhances the production and stability of community biomass, but the effects are independent, Ecology, vol. 94, no. 8, pp. 1697-1707, 2013.
K. M. Olsen and Wendel, J. F., A bountiful harvest: genomic insights into crop domestication phenotypes, Annual Review of Plant Biology, vol. 64, pp. 47-70, 2013.
D. M. Debinski, Caruthers, J., Cook, D., Crowley, J., and Wickham, H., Coenonympha haydenii Responds to Drought, Bulletin of the Ecological Society of America, vol. 94, no. 2, pp. 182-182, 2013.
Y. Huang, Martin, L. M., Isbell, F. I., and Wilsey, B. J., Is community persistence related to diversity? A test with prairie species in a long-term experiment, Basic and Applied Ecology, vol. 14, no. 3, pp. 199-207, 2013.
J. Deitloff, Petersen, J. D., and Adams, D. C., Complex species interactions lead to unpredictable outcomes in Plethodon, Herpetologica, vol. 69, no. 1, pp. 1-10, 2013.
L. Gong, Kakrana, A., Arikit, S., Meyers, B. C., and Wendel, J. F., Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species, Genome biology and evolution, vol. 5, no. 12, pp. 2449-2459, 2013.
K. M. Olsen and Wendel, J. F., Crop plants as models for understanding plant adaptation and diversification, Frontiers in plant science, vol. 4, 2013.
A. N. Pairett, Serb, J. M., and Foulkes, N. S., De Novo Assembly and Characterization of Two Transcriptomes Reveal Multiple Light-Mediated Functions in the Scallop Eye, 2013.
A. N. Pairett and Serb, J. M., De novo assembly and characterization of two transcriptomes reveal multiple light-mediated functions in the scallop eye (Bivalvia: Pectinidae), 2013.
L. Jesse, Collyer, M., Moloney, K., and Obrycki, J. J., Distribution of Megastigmus aculeatus (Hymenoptera: Torymidae) and the levels of seed predation of Rosa multiflora (Rosaceae), Weed Biology and Management, vol. 13, no. 3, pp. 79-88, 2013.
K. L. Adams and Wendel, J. F., Dynamics of duplicated gene expression in Polyploid Cotton, Polyploid and hybrid genomics, pp. 187-194, 2013.
R. C. Garrick, Nason, J. D., Fernández‐Manjarrés, J. F., and Dyer, R. J., Ecological coassociations influence species' responses to past climatic change: an example from a Sonoran Desert bark beetle, Molecular ecology, vol. 22, no. 12, pp. 3345-3361, 2013.
R. A. Moranz, Debinski, D. M., Winkler, L., Trager, J., McGranahan, D. A., Engle, D. M., and Miller, J. R., Effects of grassland management practices on ant functional groups in central North America, Journal of insect conservation, vol. 17, no. 4, pp. 699-713, 2013.
X. Zhang, M Greenlee, H. West, and Serb, J. M., EnRICH: extraction and ranking using integration and criteria heuristics, BMC systems biology, vol. 7, no. 1, p. 4, 2013.
D. Outomuro, Adams, D. C., and Johansson, F., The evolution of wing shape in ornamented-winged damselflies (Calopterygidae, Odonata), Evolutionary biology, vol. 40, no. 2, pp. 300-309, 2013.
D. C. Adams, F Rohlf, J., and Slice, D. E., A field comes of age: geometric morphometrics in the 21st century, Hystrix, the Italian journal of Mammalogy, vol. 24, no. 1, pp. 7-14, 2013.
A. J. Krause and Serb, J. M., Functional divergence? Comparing opsin expression in extra-ocular tissues and eyes of the scallop (Pectinidae)., INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 53. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E116-E116, 2013.
A. Madlung and Wendel, J. F., Genetic and epigenetic aspects of polyploid evolution in plants, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
J. Greilhuber and Leitch, I. J., Genome size and the phenotype, in Plant Genome Diversity Volume 2, Springer Vienna, 2013, pp. 323-344.
D. C. Adams and OTÁROLA‐CASTILLO, E. R. I. K., geomorph: an R package for the collection and analysis of geometric morphometric shape data, Methods in Ecology and Evolution, vol. 4, no. 4, pp. 393-399, 2013.
D. M. Debinski, Caruthers, J. C., Cook, D., Crowley, J., and Wickham, H., Gradient-based habitat affinities predict species vulnerability to drought, Ecology, vol. 94, no. 5, pp. 1036-1045, 2013.
T. Wiegand and Moloney, K. A., Handbook of spatial point-pattern analysis in ecology. CRC Press, 2013.
S. M. Thomas and Moloney, K. A., Hierarchical factors impacting the distribution of an invasive species: landscape context and propagule pressure, Landscape ecology, vol. 28, no. 1, pp. 81-93, 2013.
M. J. Yoo, Szadkowski, E., and Wendel, J. F., Homoeolog expression bias and expression level dominance in allopolyploid cotton, Heredity, vol. 110, no. 2, pp. 171-180, 2013.

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