Publications

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J. F. Wendel and Doyle, J. J., Phylogenetic incongruence: window into genome history and molecular evolution, in Molecular systematics of plants II, Springer US, 1998, pp. 265-296.
L. Attigala, Wysocki, W. P., Duvall, M. R., and Clark, L. G., Phylogenetic estimation and morphological evolution of Arundinarieae (Bambusoideae: Poaceae) based on plastome phylogenomic analysis, Molecular Phylogenetics and Evolution, 2016.
T. Bureau, Hawkins, J. S., Hu, G., Rapp, R. A., Grafenberg, J. L., and Wendel, J. F., Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium, Genome, vol. 51, no. 1, pp. 11-18, 2007.
J. M. Serb, Sherratt, E., Alejandrino, A., and Adams, D. C., Phylogenetic convergence and multiple shell shape optima for gliding scallops (Bivalvia: Pectinidae), Journal of Evolutionary Biology, 2017.
D. C. Adams and Nason, J. D., A phylogenetic comparative method for evaluating trait coevolution across two phylogenies for sets of interacting species, Evolution, 2017.
D. C. Adams and Collyer, M. L., Phylogenetic anova: group‐clade aggregation, biological challenges, and a refined permutation procedure, Evolution, 2018.
D. C. Adams and Jackson, J. F., A phylogenetic analysis of the southern pines (Pinus subsect. Australes Loudon): biogeographical and ecological implications, PROCEEDINGS-BIOLOGICAL SOCIETY OF WASHINGTON, vol. 110, pp. 681-692, 1997.
C. E. Grover, Yu, Y., Wing, R. A., Paterson, A. H., and Wendel, J. F., A phylogenetic analysis of indel dynamics in the cotton genus, Molecular Biology and Evolution, vol. 25, no. 7, pp. 1415-1428, 2008.
M. Lloyd Collyer and Adams, D. C., Phenotypic trajectory analysis: comparison of shape change patterns in evolution and ecology, Hystrix, the Italian Journal of Mammalogy, vol. 24, no. 1, pp. 75-83, 2013.
C. Edge, Rollinson, N., Brooks, R., Congdon, J., Iverson, J., Janzen, F., and Litzgus, J., Phenotypic plasticity of nest timing in a post-glacial landscape: how do reptiles adapt to seasonal time constraints?, Ecology, 2016.
Y. Jin Chun, Collyer, M. L., Moloney, K. A., and Nason, J. D., Phenotypic plasticity of native vs. invasive purple loosestrife: a two-state multivariate approach, Ecology, vol. 88, no. 6, pp. 1499-1512, 2007.
J. Hollander, Collyer, M. L., Adams, D. C., and Johannesson, K., Phenotypic plasticity in two marine snails: constraints superseding life history, Journal of evolutionary biology, vol. 19, no. 6, pp. 1861-1872, 2006.
M. L. Collyer, Stockwell, C. A., Adams, D. C., and M Reiser, H., Phenotypic plasticity and contemporary evolution in introduced populations: evidence from translocated populations of white sands pupfish (Cyrpinodon tularosa), Ecological Research, vol. 22, no. 6, pp. 902-910, 2007.
D. S. Senchina, Flagel, L. E., Wendel, J. F., and Kohut, M. L., Phenetic comparison of sevenEchinacea species based on immunomodulatory characteristics, Economic botany, vol. 60, no. 3, pp. 205-211, 2006.
R. S. Gabor, Hall, S. J., Eiriksson, D., Jameel, Y., Millington, M., Stout, T., Barnes, M. L., Gelderloos, A., Tennant, H., and Bowen, G. J., Persistent urban influence on surface water quality via impacted groundwater, Environmental Science & Technology, 2017.
R. Gabor, Hall, S., Eiriksson, D., Jameel, Y., Millington, M., Stout, T., Barnes, M., Gelderloos, A., Tennant, H., and Bowen, G., Persistent urban impacts on surface waterPersistent urban impacts on surface water quality via impacted groundwater in Red Butte Creek, 2017.
C. A. Phillips, Uzzell, T., Spolsky, C. M., Serb, J. M., Szafoni, R. E., and Pollowy, T. R., Persistent high levels of tetraploidy in salamanders of the Ambystoma jeffersonianum complex, Journal of Herpetology, pp. 530-535, 1997.
S. Renny-Byfield, Gong, L., Gallagher, J. P., and Wendel, J. F., Persistence of Subgenomes in Paleopolyploid Cotton after 60 My of Evolution, Molecular biology and evolution, vol. 32, no. 4, pp. 1063-1071, 2015.
D. C. Adams and Collyer, M. L., Permutation tests for phylogenetic comparative analyses of high‐dimensional shape data: What you shuffle matters, Evolution, vol. 69, no. 3, pp. 823-829, 2015.
G. R. Almany, De Arruda, M. P., Arthofer, W., Atallah, Z. K., Beissinger, S. R., Berumen, M. L., Bogdanowicz, S. M., Brown, S. D., Bruford, M. W., and Burdine, C., Permanent genetic resources added to molecular ecology resources database 1 May 2009–31 July 2009, Molecular Ecology Resources, vol. 9, no. 6, pp. 1460-1466, 2009.
R. Cronn, Cedroni, M., Haselkorn, T., Grover, C., and Wendel, J. F., PCR-mediated recombination in amplification products derived from polyploid cotton, Theoretical and Applied Genetics, vol. 104, no. 2-3, pp. 482-489, 2002.
W. H Polley, Derner, J. D., and Wilsey, B. J., Patterns of plant species diversity in remnant and restored tallgrass prairies, Restoration Ecology, vol. 13, no. 3, pp. 480-487, 2005.
A. L. Toth, Sumner, S., and Jeanne, R. L., Patterns of longevity across a sociality gradient in vespid wasps, Current Opinion in Insect Science, 2016.
M. Yoon Chung, Nason, J. D., and Chung, M. Gi, Patterns of hybridization and population genetic structure in the terrestrial orchids Liparis kumokiri and Liparis makinoana (Orchidaceae) in sympatric populations, Molecular Ecology, vol. 14, no. 14, pp. 4389-4402, 2005.
J. D. Nason, Ellstrand, N. C., and Arnold, M. L., Patterns of hybridization and introgression in populations of oaks, manzanitas, and irises, American Journal of Botany, pp. 101-111, 1992.
N. Valenzuela, Adams, D. C., and Janzen, F. J., Pattern does not equal process: exactly when is sex environmentally determined?, The American Naturalist, vol. 161, no. 4, pp. 676-683, 2003.
K. A. Moloney, Levin, S. A., Chiariello, N. R., and Buttel, L., Pattern and scale in a serpentine grassland, Theoretical Population Biology, vol. 41, no. 3, pp. 257-276, 1992.
J. D. Nason, E Herre, A., and Hamrick, J. L., Paternity analysis of the breeding structure of strangler fig populations: evidence for substantial long-distance wasp dispersal, Journal of Biogeography, pp. 501-512, 1996.
R. Hovav, Udall, J. A., Chaudhary, B., Rapp, R., Flagel, L., and Wendel, J. F., Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant, Proceedings of the National Academy of Sciences, vol. 105, no. 16, pp. 6191-6195, 2008.
D. C. Adams and Rosenberg, M. S., Partial warps, phylogeny, and ontogeny: a comment on Fink and Zelditch (1995), Systematic Biology, pp. 168-173, 1998.
M. R. Woodhouse and Hufford, M. B., Parallelism and convergence in post-domestication adaptation in cereal grasses, Philosophical Transactions of the Royal Society B, vol. 374, no. 1777, p. 20180245, 2019.
Y. Bao, Hu, G., Flagel, L. E., Salmon, A., Bezanilla, M., Paterson, A. H., Wang, Z., and Wendel, J. F., Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium), Proceedings of the National Academy of Sciences, vol. 108, no. 52, pp. 21152-21157, 2011.
B. Chaudhary, Hovav, R., Flagel, L., Mittler, R., and Wendel, J. F., Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium), Bmc Genomics, vol. 10, no. 1, p. 378, 2009.
D. C. Adams, Parallel evolution of character displacement driven by competitive selection in terrestrial salamanders, BMC Evolutionary Biology, vol. 10, no. 1, p. 72, 2010.
R. Hovav, Chaudhary, B., Udall, J. A., Flagel, L., and Wendel, J. F., Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton, Genetics, vol. 179, no. 3, pp. 1725-1733, 2008.
B. F. M. Olechnowski, VanNimwegen, R. E., Debinski, D. M., and Reed, W. T., A paper to be submitted to the Journal of Field Ornithology, Brian Frederick Olechnowski, p. 97, 2009.
B. F. M. Olechnowski, Debinski, D. M., and Harms, T. M., A paper to be submitted to Ecological Restoration, Brian Frederick Olechnowski, p. 70, 2009.
B. F. M. Olechnowski and Debinski, D. M., A paper published in the Wilson Journal of Ornithology, Brian Frederick Olechnowski, p. 12, 2009.
B. F. M. Olechnowski, Debinski, D. M., Drobney, P., Viste-Sparkman, K., and Reed, W. T., A paper accepted for publication in Ecological Restoration, Brian Frederick Olechnowski, p. 40, 2009.
D. C. Adams and Otárola-Castillo, E., Package ‘geomorph’: Geometric morphometric analysis of 2d/3d landmark data, R package version, vol. 1, 2012.
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K. Halverson, Heard, S. B., Nason, J. D., and Stireman, J. O., Origins, distribution, and local co-occurrence of polyploid cytotypes in Solidago altissima (Asteraceae), American Journal of Botany, vol. 95, no. 1, pp. 50-58, 2008.
J. Doebley, Wendel, J. F., Smith, J. S. C., Stuber, C. W., and Goodman, M. M., The origin of cornbelt maize: the isozyme evidence, Economic Botany, vol. 42, no. 1, pp. 120-131, 1988.
J. F. Wendel, Brubaker, C. L., and Seelanan, T., The origin and evolution of Gossypium, in Physiology of cotton, Springer Netherlands, 2010, pp. 1-18.
C. L. Brubaker, Bourland, F. M., and Wendel, J. F., The origin and domestication of cotton, Cotton: Origin, history, technology, and production. John Wiley & Sons, New York, pp. 3-31, 1999.
K. L. Adams, Percifield, R., and Wendel, J. F., Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid, Genetics, vol. 168, no. 4, pp. 2217-2226, 2004.
D. C. Adams, Organization of Plethodon salamander communities: guild-based community assembly, Ecology, vol. 88, no. 5, pp. 1292-1299, 2007.
W. Huang and Hall, S. J., Optimized high-throughput methods for quantifying iron biogeochemical dynamics in soil, Geoderma, vol. 306, pp. 67-72, 2017.
S. J. Hall, Huang, W., and Hammel, K. E., An optical method for carbon dioxide isotopes and mole fractions in small gas samples: Tracing microbial respiration from soil, litter, and lignin, Rapid Communications in Mass Spectrometry, 2017.
B. S. Bowen, Debinski, D. M., and Janzen, F. J., OPS 5-1: Evolution of institutional cultures to diversify the professoriate, The 95th ESA Annual Meeting, 2010.
D. C. Adams and Nistri, A., Ontogenetic convergence and evolution of foot morphology in European cave salamanders (Family: Plethodontidae), BMC Evolutionary Biology, vol. 10, no. 1, p. 216, 2010.

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