Publications

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2013
C. Mazancourt, Isbell, F., Larocque, A., Berendse, F., Luca, E., Grace, J. B., Haegeman, B., H Polley, W., Roscher, C., and Schmid, B., “Predicting ecosystem stability from community composition and biodiversity”, Ecology Letters, vol. 16, no. 5, pp. 617-625, 2013.
G. Hu, Koh, J., Yoo, M. ‐J., Grupp, K., Chen, S., and Wendel, J. F., “Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense”, New Phytologist, vol. 200, no. 2, pp. 570-582, 2013.
D. C. Adams, “Quantifying and comparing phylogenetic evolutionary rates for shape and other high-dimensional phenotypic data”, Systematic biology, p. syt105, 2013.
P. P. Daneshgar, H Polley, W., and Wilsey, B. J., “Simple plant traits explain functional group diversity decline in novel grassland communities of Texas”, Plant ecology, vol. 214, no. 2, pp. 231-241, 2013.
S. A. Weiner, Galbraith, D. A., Adams, D. C., Valenzuela, N., Noll, F. B., Grozinger, C. M., and Toth, A. L., “A survey of DNA methylation across social insect species, life stages, and castes reveals abundant and caste-associated methylation in a primitively social wasp”, Naturwissenschaften, vol. 100, no. 8, pp. 795-799, 2013.
J. M. Serb, Porath-Krause, A. J., and Pairett, A. N., “Uncovering a gene duplication of the photoreceptive protein, opsin, in scallops (bivalvia: Pectinidae)”, Integrative and comparative biology, p. ict063, 2013.
J. M. Serb and Krause, A. J., “Uncovering gene family expansion and molecular convergence of the photoreceptive protein opsin in scallop (Bivalvia: Pectinidae)”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 53. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E194-E194, 2013.
D. Outomuro, Adams, D. C., and Johansson, F., “Wing shape allometry and aerodynamics in calopterygid damselflies: a comparative approach”, BMC evolutionary biology, vol. 13, no. 1, p. 118, 2013.
2012
J. M. Serb, Zhang, X., and Greenlee, W. M. H., “Applying Seed Networks to Genomic Data in an EvoDevo Context: A New Analysis Tool”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 52. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E157-E157, 2012.
L. M. Martin and Wilsey, B. J., “Assembly history alters alpha and beta diversity, exotic–native proportions and functioning of restored prairie plant communities”, Journal of Applied Ecology, vol. 49, no. 6, pp. 1436-1445, 2012.
C. E. Grover, Grupp, K. K., Wanzek, R. J., and Wendel, J. F., “Assessing the monophyly of polyploid Gossypium species”, Plant systematics and evolution, vol. 298, no. 6, pp. 1177-1183, 2012.
J. L. Schafer, Mudrak, E. L., Haines, C. E., Parag, H. A., Moloney, K. A., and Holzapfel, C., “The association of native and non-native annual plants with Larrea tridentata (creosote bush) in the Mojave and Sonoran Deserts”, Journal of Arid Environments, vol. 87, pp. 129-135, 2012.
D. C. Adams, “Comparing evolutionary rates for different phenotypic traits on a phylogeny using likelihood”, Systematic biology, p. sys083, 2012.
L. Gong, Salmon, A., Yoo, M. - J., Grupp, K. K., Wang, Z., Paterson, A. H., and Wendel, J. F., “The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco”, Molecular biology and evolution, vol. 29, no. 10, pp. 3023-3036, 2012.
T. L. Dickson, Hopwood, J. L., and Wilsey, B. J., “Do priority effects benefit invasive plants more than native plants? An experiment with six grassland species”, Biological Invasions, vol. 14, no. 12, pp. 2617-2624, 2012.
L. E. Flagel, Wendel, J. F., and Udall, J. A., “Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton”, BMC genomics, vol. 13, no. 1, p. 302, 2012.
T. Blankers, Adams, D. C., and Wiens, J. J., “Ecological radiation with limited morphological diversification in salamanders”, Journal of evolutionary biology, vol. 25, no. 4, pp. 634-646, 2012.
T. J. Hovick, Miller, J. R., Dinsmore, S. J., Engle, D. M., Debinski, D. M., and Fuhlendorf, S. D., “Effects of fire and grazing on grasshopper sparrow nest survival”, The Journal of Wildlife Management, vol. 76, no. 1, pp. 19-27, 2012.
D. J. Gates and Nason, J. D., “Flowering asynchrony and mating system effects on reproductive assurance and mutualism persistence in fragmented fig–fig wasp populations”, American journal of botany, vol. 99, no. 4, pp. 757-768, 2012.
D. Allen McGranahan, Engle, D. M., Wilsey, B. J., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., “Grazing and an invasive grass confound spatial pattern of exotic and native grassland plant species richness”, Basic and Applied Ecology, vol. 13, no. 8, pp. 654-662, 2012.
C. E. Grover, Gallagher, J. P., Szadkowski, E. P., Yoo, M. J., Flagel, L. E., and Wendel, J. F., “Homoeolog expression bias and expression level dominance in allopolyploids”, New Phytologist, vol. 196, no. 4, pp. 966-971, 2012.
K. A. Yurkonis, Wilsey, B. J., and Moloney, K. A., “Initial species pattern affects invasion resistance in experimental grassland plots”, Journal of Vegetation science, vol. 23, no. 1, pp. 4-12, 2012.
C. Kueffer, Edwards, P. J., Widmer, A., Matthies, D., and Moloney, K. A., “Integrative studies in plant ecology, evolution and systematics: Sharpening the focus”, Perspectives in Plant Ecology, Evolution and Systematics, vol. 14, no. 1, pp. 1-2, 2012.
D. Allen McGranahan, Engle, D. M., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., “An invasive cool-season grass complicates prescribed fire management in a native warm-season grassland”, Natural Areas Journal, vol. 32, no. 2, pp. 208-214, 2012.
D. E. Soltis, Isozymes in plant biology. Springer Science & Business Media, 2012.
J. F. Wendel, Flagel, L. E., and Adams, K. L., “Jeans, genes, and genomes: cotton as a model for studying polyploidy”, in Polyploidy and genome evolution, Springer Berlin Heidelberg, 2012, pp. 181-207.
A. P. Kuester and Nason, J. D., “Microsatellite loci for Gossypium davidsonii (Malvaceae) and other D-genome, Sonoran Desert endemic cotton species”, American journal of botany, vol. 99, no. 3, pp. e91-e93, 2012.
A. C. Kraemer, Kissner, J., and Adams, D. C., “Morphological color-change in the red-backed salamander (Plethodon cinereus) while kept in captivity”, Copeia, vol. 2012, no. 4, pp. 748-755, 2012.
J. R. Miller, Morton, L. Wright, Engle, D. M., Debinski, D. M., and Harr, R. N., “Nature reserves as catalysts for landscape change”, Frontiers in Ecology and the Environment, vol. 10, no. 3, pp. 144-152, 2012.
N. Bjarnholt, Nakonieczny, M., Kędziorski, A., Debinski, D. M., Matter, S. F., Olsen, C. Erik, and Zagrobelny, M., “Occurrence of sarmentosin and other hydroxynitrile glucosides in Parnassius (Papilionidae) butterflies and their food plants”, Journal of chemical ecology, vol. 38, no. 5, pp. 525-537, 2012.
D. C. Adams and Otárola-Castillo, E., “Package ‘geomorph’: Geometric morphometric analysis of 2d/3d landmark data”, R package version, vol. 1, 2012.
J. Greilhuber, Dolezel, J., Leitch, I. J., and Wendel, J. F., Plant Genome Diversity: Vol. 1: Plant Genomes, Their Residents, and Their Evolutionary Dynamics. Springer, 2012.
I. J. Leitch, Greilhuber, J., Dolezel, J., and Wendel, J. F., Plant Genome Diversity Volume 2: Physical Structure, Behaviour and Evolution of Plant Genomes, vol. 2. Springer Science & Business Media, 2012.
A. P. Kuester, Jones, R. W., Sappington, T. W., Kim, K. Seok, Barr, N. B., Roehrdanz, R. L., Senechal, P., and Nason, J. D., “Population structure and genetic diversity of the boll weevil (Coleoptera: Curculionidae) on Gossypium in North America”, Annals of the Entomological Society of America, vol. 105, no. 6, pp. 902-916, 2012.
A. E. Russell and Raich, J. W., “Rapidly growing tropical trees mobilize remarkable amounts of nitrogen, in ways that differ surprisingly among species”, Proceedings of the National Academy of Sciences, vol. 109, no. 26, pp. 10398-10402, 2012.
A. M. Sparkman, Schwartz, T. S., Madden, J. A., Boyken, S. E., Ford, N. B., Serb, J. M., and Bronikowski, A. M., “Rates of molecular evolution vary in vertebrates for insulin-like growth factor-1 (IGF-1), a pleiotropic locus that regulates life history traits”, General and comparative endocrinology, vol. 178, no. 1, pp. 164-173, 2012.
D. L. Rabosky and Adams, D. C., “Rates of morphological evolution are correlated with species richness in salamanders”, Evolution, vol. 66, no. 6, pp. 1807-1818, 2012.
A. Kaliontzopoulou, Adams, D. C., van der Meijden, A., Perera, A., and Carretero, M. A., “Relationships between head morphology, bite performance and ecology in two species of Podarcis wall lizards”, Evolutionary Ecology, vol. 26, no. 4, pp. 825-845, 2012.
A. H. Paterson, Wendel, J. F., Gundlach, H., Guo, H., Jenkins, J., Jin, D., Llewellyn, D., Showmaker, K. C., Shu, S., and Udall, J., “Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres”, Nature, vol. 492, no. 7429, pp. 423-427, 2012.
D. A. McGranahan, Engle, D. M., Fuhlendorf, S. D., Winter, S. J., Miller, J. R., and Debinski, D. M., “Spatial heterogeneity across five rangelands managed with pyric‐herbivory”, Journal of Applied Ecology, vol. 49, no. 4, pp. 903-910, 2012.
A. Salmon, Udall, J. A., Jeddeloh, J. A., and Wendel, J. F., “Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton”, G3: Genes| Genomes| Genetics, vol. 2, no. 8, pp. 921-930, 2012.
C. E. Grover, Salmon, A., and Wendel, J. F., “Targeted sequence capture as a powerful tool for evolutionary analysis1”, American journal of botany, vol. 99, no. 2, pp. 312-319, 2012.
R. A. Moranz, Debinski, D. M., McGranahan, D. A., Engle, D. M., and Miller, J. R., “Untangling the effects of fire, grazing, and land-use legacies on grassland butterfly communities”, Biodiversity and Conservation, vol. 21, no. 11, pp. 2719-2746, 2012.
2011
F. C. Pillsbury, Miller, J. R., Debinski, D. M., and Engle, D. M., “Another tool in the toolbox? Using fire and grazing to promote bird diversity in highly fragmented landscapes”, Ecosphere, vol. 2, no. 3, p. art28, 2011.
J. Zhang, Loynachan, T. E., and Raich, J. W., “Artificial soils to assess temperature sensitivity of the decomposition of model organic compounds: effects of chemical recalcitrance and clay‐mineral composition”, European Journal of Soil Science, vol. 62, no. 6, pp. 863-873, 2011.
B. J. Wilsey, Daneshgar, P. P., and H Polley, W., “Biodiversity, phenology and temporal niche differences between native-and novel exotic-dominated grasslands”, Perspectives in Plant Ecology, Evolution and Systematics, vol. 13, no. 4, pp. 265-276, 2011.
N. Valenzuela and Adams, D. C., “Chromosome number and sex determination coevolve in turtles”, Evolution, vol. 65, no. 6, pp. 1808-1813, 2011.
A. N. Pairett and Serb, J. M., “Comparative transcriptomics: A study using the mirror eye of the scallop, Argopecten irradians”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 51. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E234-E234, 2011.
J. M. Orlofske, Ohnesorg, W. J., and Debinski, D. M., “A comparison of the arthropod communities in remnant, restored, and reconstructed Iowa tallgrass prairies”, Natural Areas Journal, vol. 31, no. 2, pp. 148-155, 2011.
F. Jeltsch, Moloney, K. A., Schwager, M., Körner, K., and Blaum, N., “Consequences of correlations between habitat modifications and negative impact of climate change for regional species survival”, Agriculture, ecosystems & environment, vol. 145, no. 1, pp. 49-58, 2011.

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