Publications

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2011
D. C. Adams, Cardini, A., Monteiro, L. R., O'Higgins, P., and Rohlf, F. J., “Morphometrics and phylogenetics: principal components of shape from cranial modules are neither appropriate nor effective cladistic characters”, Journal of Human Evolution, vol. 60, no. 2, pp. 240-243, 2011.
X. Zhang, Serb, J. M., and M Greenlee, H. West, “Mouse retinal development: a dark horse model for systems biology research”, Bioinformatics and biology insights, vol. 5, p. 99, 2011.
Y. Bao, Hu, G., Flagel, L. E., Salmon, A., Bezanilla, M., Paterson, A. H., Wang, Z., and Wendel, J. F., “Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium)”, Proceedings of the National Academy of Sciences, vol. 108, no. 52, pp. 21152-21157, 2011.
T. J. Hovick, Miller, J. R., Koford, R. R., Engle, D. M., and Debinski, D. M., “Postfledging survival of grasshopper sparrows in grasslands managed with fire and grazing”, The Condor, vol. 113, no. 2, pp. 429-437, 2011.
D. C. Adams, “Quantitative genetics and evolution of head shape in Plethodon salamanders”, Evolutionary Biology, vol. 38, no. 3, pp. 278-286, 2011.
F. I. Isbell and Wilsey, B. J., “Rapid biodiversity declines in both ungrazed and intensely grazed exotic grasslands”, Plant Ecology, vol. 212, no. 10, pp. 1663-1674, 2011.
A. J. Krause, Pairett, A. N., and Serb, J. M., “The role of gene duplication and convergence in the molecular evolution of scallop opsins”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 51. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E73-E73, 2011.
M. Yoon Chung, Nason, J. D., and Chung, M. Gi, “Significant demographic and fine-scale genetic structure in expanding and senescing populations of the terrestrial orchid Cymbidium goeringii (Orchidaceae)”, American journal of botany, vol. 98, no. 12, pp. 2027-2039, 2011.
J. A. Sherwood, Debinski, D. M., and Germino, M. J., “Testing the Effects of Simulated Climate Change Effects Using Open Sided Warming Chambers”, University of Wyoming National Park Service Research Center Annual Report, vol. 33, no. 1, pp. 147-153, 2011.
2010
F. C. Pillsbury, Miller, J. R., Debinski, D. M., and Engle, D. M., “AVIAN COMMUNITY STRUCTURE IN FRAGMENTED GRASSLANDS MANAGED USING A FIRE-GRAZING INTERACTION”, Grassland bird responses to a fire-grazing interaction in a fragmented landscape, p. 5, 2010.
C. M. Berns and Adams, D. C., “Bill shape and sexual shape dimorphism between two species of temperate hummingbirds: Black-Chinned hummingbird (Archilochus alexandri) and Ruby-Throated hummingbird (A. colubris)”, The Auk, vol. 127, no. 3, pp. 626-635, 2010.
E. S. A. Home, “Carbon Dynamics in the Tropics”, 2010.
R. M. Maher, Asbjornsen, H., Kolka, R. K., Cambardella, C. A., and Raich, J. W., “Changes in soil respiration across a chronosequence of tallgrass prairie reconstructions”, Agriculture, ecosystems & environment, vol. 139, no. 4, pp. 749-753, 2010.
Y. Jin Chun, Kim, C. - G., and Moloney, K. A., “Comparison of life history traits between invasive and native populations of purple loosestrife (Lythrum salicaria) using nonlinear mixed effects model”, Aquatic Botany, vol. 93, no. 4, pp. 221-226, 2010.
D. M. Debinski, “DB Lindenmayer, Large-scale landscape experiments: lessons from Tumut”, Landscape Ecology, vol. 25, no. 1, pp. 161-162, 2010.
J. A. Vogel, Koford, R. R., and Debinski, D. M., “Direct and indirect responses of tallgrass prairie butterflies to prescribed burning”, Journal of Insect Conservation, vol. 14, no. 6, pp. 663-677, 2010.
L. Lin, Pierce, G. J., Bowers, J. E., Estill, J. C., Compton, R. O., Rainville, L. K., Kim, C., Lemke, C., Rong, J., and Tang, H., “A draft physical map of a D-genome cotton species (Gossypium raimondii)”, BMC genomics, vol. 11, no. 1, p. 395, 2010.
B. J. Wilsey, “An empirical comparison of beta diversity indices in establishing prairies”, Ecology, vol. 91, no. 7, pp. 1984-1988, 2010.
B. S. Bowen, Debinski, D. M., and Janzen, F. J., “EVOLUTION OF INSTITUTIONAL CULTURE TO DIVERSIFY THE PROFESSORIATE”, 2010.
L. E. Flagel and Wendel, J. F., “Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation”, New Phytologist, vol. 186, no. 1, pp. 184-193, 2010.
M. E. Dornbush and Wilsey, B. J., “Experimental manipulation of soil depth alters species richness and co‐occurrence in restored tallgrass prairie”, Journal of ecology, vol. 98, no. 1, pp. 117-125, 2010.
M. Yoon Chung, Nason, J. D., Sun, B. - Y., Moon, M. - O., Chung, J. Min, Park, C. - W., and Chung, M. Gi, “Extremely low levels of genetic variation in the critically endangered monotypic fern genus Mankyua chejuense (Ophioglossaceae) from Korea: Implications for conservation”, Biochemical Systematics and Ecology, vol. 38, no. 5, pp. 888-896, 2010.
P. Piras, Colangelo, P., Adams, D. C., Buscalioni, A., Cubo, J., Kotsakis, T., Meloro, C., and Raia, P., “The Gavialis–Tomistoma debate: the contribution of skull ontogenetic allometry and growth trajectories to the study of crocodylian relationships”, Evolution & development, vol. 12, no. 6, pp. 568-579, 2010.
A. S. Rivera, M Pankey, S., Plachetzki, D. C., Villacorta, C., Syme, A. E., Serb, J. M., Omilian, A. R., and Oakley, T. H., “Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach”, BMC evolutionary biology, vol. 10, no. 1, p. 123, 2010.
R. A. Rapp, Haigler, C. H., Flagel, L., Hovav, R. H., Udall, J. A., and Wendel, J. F., “Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication”, BMC biology, vol. 8, no. 1, p. 139, 2010.
T. Bureau, Hu, G., Hawkins, J. S., Grover, C. E., and Wendel, J. F., “The history and disposition of transposable elements in polyploid Gossypium”, Genome, vol. 53, no. 8, pp. 599-607, 2010.
A. Salmon, Flagel, L., Ying, B., Udall, J. A., and Wendel, J. F., “Homoeologous nonreciprocal recombination in polyploid cotton”, New Phytologist, vol. 186, no. 1, pp. 123-134, 2010.
K. A. Yurkonis, Wilsey, B. J., Moloney, K. A., and van der Valk, A. G., “The impact of seeding method on diversity and plant distribution in two restored grasslands”, Restoration Ecology, vol. 18, no. 3, pp. 311-321, 2010.
A. E. Russell, Raich, J. W., Arrieta, R. Bedoya, Valverde-Barrantes, O., and González, E., “Impacts of individual tree species on carbon dynamics in a moist tropical forest environment”, Ecological Applications, vol. 20, no. 4, pp. 1087-1100, 2010.
R. J. Dyer, Nason, J. D., and Garrick, R. C., “Landscape modelling of gene flow: improved power using conditional genetic distance derived from the topology of population networks”, Molecular Ecology, vol. 19, no. 17, pp. 3746-3759, 2010.
E. Öckinger, Schweiger, O., Crist, T. O., Debinski, D. M., Krauss, J., Kuussaari, M., Petersen, J. D., Pöyry, J., Settele, J., and Summerville, K. S., “Life‐history traits predict species responses to habitat area and isolation: a cross‐continental synthesis”, Ecology letters, vol. 13, no. 8, pp. 969-979, 2010.
T. L. Dickson, Wilsey, B. J., Busby, R. R., and Gebhart, D. L., “Melilotus officinalis (yellow sweetclover) causes large changes in community and ecosystem processes in both the presence and absence of a cover crop”, Biological invasions, vol. 12, no. 1, pp. 65-76, 2010.
D. M. Debinski, Wickham, H., Kindscher, K., Caruthers, J. C., and Germino, M., “Montane meadow change during drought varies with background hydrologic regime and plant functional group”, Ecology, vol. 91, no. 6, pp. 1672-1681, 2010.
Y. Bao, Wendel, J. F., and Ge, S., “Multiple patterns of rDNA evolution following polyploidy in Oryza”, Molecular phylogenetics and evolution, vol. 55, no. 1, pp. 136-142, 2010.
D. C. Adams and Nistri, A., “Ontogenetic convergence and evolution of foot morphology in European cave salamanders (Family: Plethodontidae)”, BMC Evolutionary Biology, vol. 10, no. 1, p. 216, 2010.
B. S. Bowen, Debinski, D. M., and Janzen, F. J., “OPS 5-1: Evolution of institutional cultures to diversify the professoriate”, The 95th ESA Annual Meeting, 2010.
J. F. Wendel, Brubaker, C. L., and Seelanan, T., “The origin and evolution of Gossypium”, in Physiology of cotton, Springer Netherlands, 2010, pp. 1-18.
D. C. Adams, “Parallel evolution of character displacement driven by competitive selection in terrestrial salamanders”, BMC Evolutionary Biology, vol. 10, no. 1, p. 72, 2010.
L. Betancur, Singh, B., Rapp, R. A., Wendel, J. F., M Marks, D., Roberts, A. W., and Haigler, C. H., “Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber”, Journal of integrative plant biology, vol. 52, no. 2, pp. 205-220, 2010.
J. M. Orlofske, Ohnesorg, W. J., and Debinski, D. M., “Potential terrestrial arthropod indicators for tallgrass prairie restoration in Iowa”, Ecological Restoration, vol. 28, no. 3, pp. 250-253, 2010.
B. J. Wilsey, “Productivity and subordinate species response to dominant grass species and seed source during restoration”, Restoration Ecology, vol. 18, no. 5, pp. 628-637, 2010.
L. C. Jesse, Nason, J. D., Obrycki, J. J., and Moloney, K. A., “Quantifying the levels of sexual reproduction and clonal spread in the invasive plant, Rosa multiflora”, Biological invasions, vol. 12, no. 6, pp. 1847-1854, 2010.
C. E. Grover and Wendel, J. F., “Recent insights into mechanisms of genome size change in plants”, Journal of Botany, vol. 2010, 2010.
J. M. Pleasants and Wendel, J. F., “Reproductive and Pollination Biology of the Endemic Hawaiian Cotton, Gossypium tomentosum (Malvaceae) 1”, Pacific Science, vol. 64, no. 1, pp. 45-55, 2010.
K. A. Yurkonis, Wilsey, B. J., Moloney, K. A., Drobney, P., and Larson, D. L., “Seeding Method Influences Warm‐Season Grass Abundance and Distribution but not Local Diversity in Grassland Restoration”, Restoration Ecology, vol. 18, no. s2, pp. 344-353, 2010.
A. H. Paterson, Rong, J. -kang, Gingle, A. R., Chee, P. W., Dennis, E. S., Llewellyn, D., III, L. S. Dure, Haigler, C., Myers, G. O., and Peterson, D. G., “Sequencing and utilization of the Gossypium genomes”, Tropical Plant Biology, vol. 3, no. 2, pp. 71-74, 2010.
C. D. Kelly and Adams, D. C., “Sexual selection, ontogenetic acceleration, and hypermorphosis generates male trimorphism in Wellington tree weta”, Evolutionary Biology, vol. 37, no. 4, pp. 200-209, 2010.
H. U. I. Yu, Nason, J. D., Ge, X., and Zeng, J., “Slatkin’s Paradox: when direct observation and realized gene flow disagree. A case study in Ficus”, Molecular Ecology, vol. 19, no. 20, pp. 4441-4453, 2010.
D. M. Debinski, Wickham, H., Kindscher, K., Caruthers, J., and Germino, M. J., “SYMP 22-8: Montane meadow change during drought varies with background hydrologic regime and plant functional group”, The 95th ESA Annual Meeting, 2010.
J. M. Serb, Orr, M. C., and M Greenlee, H. West, “Using evolutionary conserved modules in gene networks as a strategy to leverage high throughput gene expression queries”, PloS one, vol. 5, no. 10.1371, 2010.

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