Publications

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2013
X. Zhang, M Greenlee, H. West, and Serb, J. M., “EnRICH: extraction and ranking using integration and criteria heuristics”, BMC systems biology, vol. 7, no. 1, p. 4, 2013.
D. Outomuro, Adams, D. C., and Johansson, F., “The evolution of wing shape in ornamented-winged damselflies (Calopterygidae, Odonata)”, Evolutionary biology, vol. 40, no. 2, pp. 300-309, 2013.
D. C. Adams, F Rohlf, J., and Slice, D. E., “A field comes of age: geometric morphometrics in the 21st century”, Hystrix, the Italian journal of Mammalogy, vol. 24, no. 1, pp. 7-14, 2013.
A. J. Krause and Serb, J. M., “Functional divergence? Comparing opsin expression in extra-ocular tissues and eyes of the scallop (Pectinidae).”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 53. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E116-E116, 2013.
A. Madlung and Wendel, J. F., “Genetic and epigenetic aspects of polyploid evolution in plants”, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
J. Greilhuber and Leitch, I. J., “Genome size and the phenotype”, in Plant Genome Diversity Volume 2, Springer Vienna, 2013, pp. 323-344.
D. C. Adams and OTÁROLA‐CASTILLO, E. R. I. K., “geomorph: an R package for the collection and analysis of geometric morphometric shape data”, Methods in Ecology and Evolution, vol. 4, no. 4, pp. 393-399, 2013.
D. M. Debinski, Caruthers, J. C., Cook, D., Crowley, J., and Wickham, H., “Gradient-based habitat affinities predict species vulnerability to drought”, Ecology, vol. 94, no. 5, pp. 1036-1045, 2013.
T. Wiegand and Moloney, K. A., Handbook of spatial point-pattern analysis in ecology. CRC Press, 2013.
S. M. Thomas and Moloney, K. A., “Hierarchical factors impacting the distribution of an invasive species: landscape context and propagule pressure”, Landscape ecology, vol. 28, no. 1, pp. 81-93, 2013.
M. J. Yoo, Szadkowski, E., and Wendel, J. F., “Homoeolog expression bias and expression level dominance in allopolyploid cotton”, Heredity, vol. 110, no. 2, pp. 171-180, 2013.
D. Allen McGranahan, Engle, D. M., Fuhlendorf, S. D., Winter, S. L., Miller, J. R., and Debinski, D. M., “Inconsistent outcomes of heterogeneity-based management underscore importance of matching evaluation to conservation objectives”, Environmental Science & Policy, vol. 31, pp. 53-60, 2013.
M. Schat, Schafer, J. L., Mudrak, E. L., Parag, H. A., Moloney, K. A., Holzapfel, C., Close, S. L., Menge, B. A., Van Appledorn, M., and Baker, M. E., “Influence of soil disturbance, seed pressure, aridity, and burn history on community structure of winter annuals in North American deserts”, 98th ESA Annual Meeting, 2013.
J. T. Page, Huynh, M. D., Liechty, Z. S., Grupp, K., Stelly, D., Hulse, A. M., Ashrafi, H., Van Deynze, A., Wendel, J. F., and Udall, J. A., “Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing”, G3: Genes| Genomes| Genetics, vol. 3, no. 10, pp. 1809-1818, 2013.
C. D. Kelly, Folinsbee, K. E., Adams, D. C., and Jennions, M. D., “Intraspecific sexual size and shape dimorphism in an Australian freshwater fish differs with respect to a biogeographic barrier and latitude”, Evolutionary Biology, vol. 40, no. 3, pp. 408-419, 2013.
D. Allen McGranahan, Engle, D. M., Miller, J. R., and Debinski, D. M., “An invasive grass increases live fuel proportion and reduces fire spread in a simulated grassland”, Ecosystems, vol. 16, no. 1, pp. 158-169, 2013.
J. F. Wendel, “Jeans, Genes, and The Independent Domestications Of Cotton”, Plant and Animal Genome XXI Conference. Plant and Animal Genome, 2013.
I. Ibáñez, Gornish, E. S., Buckley, L., Debinski, D. M., Hellmann, J., Helmuth, B., HilleRisLambers, J., Latimer, A. M., Miller‐Rushing, A. J., and Uriarte, M., “Moving forward in global‐change ecology: capitalizing on natural variability”, Ecology and evolution, vol. 3, no. 1, pp. 170-181, 2013.
D. Allen McGranahan, Engle, D. M., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., “Multivariate analysis of rangeland vegetation and soil organic carbon describes degradation, informs restoration and conservation”, Land, vol. 2, no. 3, pp. 328-350, 2013.
H. U. I. Yu and Nason, J. D., “Nuclear and chloroplast DNA phylogeography of Ficus hirta: obligate pollination mutualism and constraints on range expansion in response to climate change”, New Phytologist, vol. 197, no. 1, pp. 276-289, 2013.
M. Lloyd Collyer and Adams, D. C., “Phenotypic trajectory analysis: comparison of shape change patterns in evolution and ecology”, Hystrix, the Italian Journal of Mammalogy, vol. 24, no. 1, pp. 75-83, 2013.
C. P. Ceballos, Adams, D. C., Iverson, J. B., and Valenzuela, N., “Phylogenetic patterns of sexual size dimorphism in turtles and their implications for Rensch’s rule”, Evolutionary Biology, vol. 40, no. 2, pp. 194-208, 2013.
W. H Polley, Isbell, F. I., and Wilsey, B. J., “Plant functional traits improve diversity‐based predictions of temporal stability of grassland productivity”, Oikos, vol. 122, no. 9, pp. 1275-1282, 2013.
C. Mazancourt, Isbell, F., Larocque, A., Berendse, F., Luca, E., Grace, J. B., Haegeman, B., H Polley, W., Roscher, C., and Schmid, B., “Predicting ecosystem stability from community composition and biodiversity”, Ecology Letters, vol. 16, no. 5, pp. 617-625, 2013.
G. Hu, Koh, J., Yoo, M. ‐J., Grupp, K., Chen, S., and Wendel, J. F., “Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense”, New Phytologist, vol. 200, no. 2, pp. 570-582, 2013.
D. C. Adams, “Quantifying and comparing phylogenetic evolutionary rates for shape and other high-dimensional phenotypic data”, Systematic biology, p. syt105, 2013.
P. P. Daneshgar, H Polley, W., and Wilsey, B. J., “Simple plant traits explain functional group diversity decline in novel grassland communities of Texas”, Plant ecology, vol. 214, no. 2, pp. 231-241, 2013.
S. A. Weiner, Galbraith, D. A., Adams, D. C., Valenzuela, N., Noll, F. B., Grozinger, C. M., and Toth, A. L., “A survey of DNA methylation across social insect species, life stages, and castes reveals abundant and caste-associated methylation in a primitively social wasp”, Naturwissenschaften, vol. 100, no. 8, pp. 795-799, 2013.
J. M. Serb, Porath-Krause, A. J., and Pairett, A. N., “Uncovering a gene duplication of the photoreceptive protein, opsin, in scallops (bivalvia: Pectinidae)”, Integrative and comparative biology, p. ict063, 2013.
J. M. Serb and Krause, A. J., “Uncovering gene family expansion and molecular convergence of the photoreceptive protein opsin in scallop (Bivalvia: Pectinidae)”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 53. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E194-E194, 2013.
D. Outomuro, Adams, D. C., and Johansson, F., “Wing shape allometry and aerodynamics in calopterygid damselflies: a comparative approach”, BMC evolutionary biology, vol. 13, no. 1, p. 118, 2013.
2012
J. M. Serb, Zhang, X., and Greenlee, W. M. H., “Applying Seed Networks to Genomic Data in an EvoDevo Context: A New Analysis Tool”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 52. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E157-E157, 2012.
L. M. Martin and Wilsey, B. J., “Assembly history alters alpha and beta diversity, exotic–native proportions and functioning of restored prairie plant communities”, Journal of Applied Ecology, vol. 49, no. 6, pp. 1436-1445, 2012.
C. E. Grover, Grupp, K. K., Wanzek, R. J., and Wendel, J. F., “Assessing the monophyly of polyploid Gossypium species”, Plant systematics and evolution, vol. 298, no. 6, pp. 1177-1183, 2012.
J. L. Schafer, Mudrak, E. L., Haines, C. E., Parag, H. A., Moloney, K. A., and Holzapfel, C., “The association of native and non-native annual plants with Larrea tridentata (creosote bush) in the Mojave and Sonoran Deserts”, Journal of Arid Environments, vol. 87, pp. 129-135, 2012.
D. C. Adams, “Comparing evolutionary rates for different phenotypic traits on a phylogeny using likelihood”, Systematic biology, p. sys083, 2012.
L. Gong, Salmon, A., Yoo, M. - J., Grupp, K. K., Wang, Z., Paterson, A. H., and Wendel, J. F., “The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco”, Molecular biology and evolution, vol. 29, no. 10, pp. 3023-3036, 2012.
T. L. Dickson, Hopwood, J. L., and Wilsey, B. J., “Do priority effects benefit invasive plants more than native plants? An experiment with six grassland species”, Biological Invasions, vol. 14, no. 12, pp. 2617-2624, 2012.
L. E. Flagel, Wendel, J. F., and Udall, J. A., “Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton”, BMC genomics, vol. 13, no. 1, p. 302, 2012.
T. Blankers, Adams, D. C., and Wiens, J. J., “Ecological radiation with limited morphological diversification in salamanders”, Journal of evolutionary biology, vol. 25, no. 4, pp. 634-646, 2012.
T. J. Hovick, Miller, J. R., Dinsmore, S. J., Engle, D. M., Debinski, D. M., and Fuhlendorf, S. D., “Effects of fire and grazing on grasshopper sparrow nest survival”, The Journal of Wildlife Management, vol. 76, no. 1, pp. 19-27, 2012.
D. J. Gates and Nason, J. D., “Flowering asynchrony and mating system effects on reproductive assurance and mutualism persistence in fragmented fig–fig wasp populations”, American journal of botany, vol. 99, no. 4, pp. 757-768, 2012.
D. Allen McGranahan, Engle, D. M., Wilsey, B. J., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., “Grazing and an invasive grass confound spatial pattern of exotic and native grassland plant species richness”, Basic and Applied Ecology, vol. 13, no. 8, pp. 654-662, 2012.
C. E. Grover, Gallagher, J. P., Szadkowski, E. P., Yoo, M. J., Flagel, L. E., and Wendel, J. F., “Homoeolog expression bias and expression level dominance in allopolyploids”, New Phytologist, vol. 196, no. 4, pp. 966-971, 2012.
K. A. Yurkonis, Wilsey, B. J., and Moloney, K. A., “Initial species pattern affects invasion resistance in experimental grassland plots”, Journal of Vegetation science, vol. 23, no. 1, pp. 4-12, 2012.
C. Kueffer, Edwards, P. J., Widmer, A., Matthies, D., and Moloney, K. A., “Integrative studies in plant ecology, evolution and systematics: Sharpening the focus”, Perspectives in Plant Ecology, Evolution and Systematics, vol. 14, no. 1, pp. 1-2, 2012.
D. Allen McGranahan, Engle, D. M., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., “An invasive cool-season grass complicates prescribed fire management in a native warm-season grassland”, Natural Areas Journal, vol. 32, no. 2, pp. 208-214, 2012.
D. E. Soltis, Isozymes in plant biology. Springer Science & Business Media, 2012.
J. F. Wendel, Flagel, L. E., and Adams, K. L., “Jeans, genes, and genomes: cotton as a model for studying polyploidy”, in Polyploidy and genome evolution, Springer Berlin Heidelberg, 2012, pp. 181-207.
A. P. Kuester and Nason, J. D., “Microsatellite loci for Gossypium davidsonii (Malvaceae) and other D-genome, Sonoran Desert endemic cotton species”, American journal of botany, vol. 99, no. 3, pp. e91-e93, 2012.

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