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2014

A. C. Kraemer and Adams, D. C., “Predator perception of Batesian mimicry and conspicuousness in a salamander”, Evolution, vol. 68, no. 4, pp. 1197-1206, 2014.

E. L. Mudrak, Schafer, J. L., Fuentes-Ramirez, A., Holzapfel, C., and Moloney, K. A., “Predictive modeling of spatial patterns of soil nutrients related to fertility islands”, Landscape ecology, vol. 29, no. 3, pp. 491-505, 2014.

G. Hu, Koh, J., Yoo, M. - J., Pathak, D., Chen, S., and Wendel, J. F., “Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.)”, Planta, vol. 240, no. 6, pp. 1237-1251, 2014.

G. Rivera, Davis, J. N., Godwin, J. C., and Adams, D. C., “Repeatability of Habitat-Associated Divergence in Shell Shape of Turtles”, Evolutionary Biology, vol. 41, pp. 29-37, 2014.

B. A Duthie, Abbott, K. C., and Nason, J. D., “Trade-Offs and Coexistence: A Lottery Model Applied to Fig Wasp Communities”, The American Naturalist, vol. 183, no. 6, pp. 826-841, 2014.

B. A Duthie, Abbott, K. C., and Nason, J. D., “Trade-offs and coexistence: a lottery model applied to fig wasp communities”, The American Naturalist, vol. 183, no. 6, pp. 826-841, 2014.

J. M. Serb, Krause-Porath, A. J., and Pairett, A. N., “Uncovering patterns underlying the molecular evolution of non-visual photoreception in molluscs”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 54. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E189-E189, 2014.

D. I. Speiser, M Pankey, S., Zaharoff, A. K., Battelle, B. A., Bracken-Grissom, H. D., Breinholt, J. W., Bybee, S. M., Cronin, T. W., Garm, A., and Lindgren, A. R., “Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms”, BMC bioinformatics, vol. 15, no. 1, p. 350, 2014.

J. L. Donnelly, Adams, D. C., and Dekker, J., “Weedy Adaptation in Setaria spp.: VI. S. faberi Seed hull shape as soil germination signal antenna”, arXiv preprint arXiv:1403.7064, 2014.

N. M. Caruso, Sears, M. W., Adams, D. C., and Lips, K. R., “Widespread rapid reductions in body size of adult salamanders in response to climate change”, Global change biology, vol. 20, no. 6, pp. 1751-1759, 2014.

2013

C. M. Berns and Adams, D. C., “Becoming different but staying alike: patterns of sexual size and shape dimorphism in bills of hummingbirds”, Evolutionary Biology, vol. 40, no. 2, pp. 246-260, 2013.

B. J. Cardinale, Gross, K., Fritschie, K., Flombaum, P., Fox, J. W., Rixen, C., van Ruijven, J., Reich, P. B., Scherer-Lorenzen, M., and Wilsey, B. J., “Biodiversity simultaneously enhances the production and stability of community biomass, but the effects are independent”, Ecology, vol. 94, no. 8, pp. 1697-1707, 2013.

K. M. Olsen and Wendel, J. F., “A bountiful harvest: genomic insights into crop domestication phenotypes”, Annual Review of Plant Biology, vol. 64, pp. 47-70, 2013.

D. M. Debinski, Caruthers, J., Cook, D., Crowley, J., and Wickham, H., “Coenonympha haydenii Responds to Drought”, Bulletin of the Ecological Society of America, vol. 94, no. 2, pp. 182-182, 2013.

Y. Huang, Martin, L. M., Isbell, F. I., and Wilsey, B. J., “Is community persistence related to diversity? A test with prairie species in a long-term experiment”, Basic and Applied Ecology, vol. 14, no. 3, pp. 199-207, 2013.

J. Deitloff, Petersen, J. D., and Adams, D. C., “Complex species interactions lead to unpredictable outcomes in Plethodon”, Herpetologica, vol. 69, no. 1, pp. 1-10, 2013.

L. Gong, Kakrana, A., Arikit, S., Meyers, B. C., and Wendel, J. F., “Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species”, Genome biology and evolution, vol. 5, no. 12, pp. 2449-2459, 2013.

K. M. Olsen and Wendel, J. F., “Crop plants as models for understanding plant adaptation and diversification”, Frontiers in plant science, vol. 4, 2013.

A. N. Pairett, Serb, J. M., and Foulkes, N. S., “De Novo Assembly and Characterization of Two Transcriptomes Reveal Multiple Light-Mediated Functions in the Scallop Eye”, 2013.

A. N. Pairett and Serb, J. M., “De novo assembly and characterization of two transcriptomes reveal multiple light-mediated functions in the scallop eye (Bivalvia: Pectinidae)”, 2013.

L. Jesse, Collyer, M., Moloney, K., and Obrycki, J. J., “Distribution of Megastigmus aculeatus (Hymenoptera: Torymidae) and the levels of seed predation of Rosa multiflora (Rosaceae)”, Weed Biology and Management, vol. 13, no. 3, pp. 79-88, 2013.

K. L. Adams and Wendel, J. F., “Dynamics of duplicated gene expression in Polyploid Cotton”, Polyploid and hybrid genomics, pp. 187-194, 2013.

R. C. Garrick, Nason, J. D., Fernández‐Manjarrés, J. F., and Dyer, R. J., “Ecological coassociations influence species' responses to past climatic change: an example from a Sonoran Desert bark beetle”, Molecular ecology, vol. 22, no. 12, pp. 3345-3361, 2013.

R. A. Moranz, Debinski, D. M., Winkler, L., Trager, J., McGranahan, D. A., Engle, D. M., and Miller, J. R., “Effects of grassland management practices on ant functional groups in central North America”, Journal of insect conservation, vol. 17, no. 4, pp. 699-713, 2013.

X. Zhang, M Greenlee, H. West, and Serb, J. M., “EnRICH: extraction and ranking using integration and criteria heuristics”, BMC systems biology, vol. 7, no. 1, p. 4, 2013.

D. Outomuro, Adams, D. C., and Johansson, F., “The evolution of wing shape in ornamented-winged damselflies (Calopterygidae, Odonata)”, Evolutionary biology, vol. 40, no. 2, pp. 300-309, 2013.

D. C. Adams, F Rohlf, J., and Slice, D. E., “A field comes of age: geometric morphometrics in the 21st century”, Hystrix, the Italian journal of Mammalogy, vol. 24, no. 1, pp. 7-14, 2013.

A. J. Krause and Serb, J. M., “Functional divergence? Comparing opsin expression in extra-ocular tissues and eyes of the scallop (Pectinidae).”, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 53. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E116-E116, 2013.

A. Madlung and Wendel, J. F., “Genetic and epigenetic aspects of polyploid evolution in plants”, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.

J. Greilhuber and Leitch, I. J., “Genome size and the phenotype”, in Plant Genome Diversity Volume 2, Springer Vienna, 2013, pp. 323-344.

D. C. Adams and OTÁROLA‐CASTILLO, E. R. I. K., “geomorph: an R package for the collection and analysis of geometric morphometric shape data”, Methods in Ecology and Evolution, vol. 4, no. 4, pp. 393-399, 2013.

D. M. Debinski, Caruthers, J. C., Cook, D., Crowley, J., and Wickham, H., “Gradient-based habitat affinities predict species vulnerability to drought”, Ecology, vol. 94, no. 5, pp. 1036-1045, 2013.

T. Wiegand and Moloney, K. A., Handbook of spatial point-pattern analysis in ecology. CRC Press, 2013.

S. M. Thomas and Moloney, K. A., “Hierarchical factors impacting the distribution of an invasive species: landscape context and propagule pressure”, Landscape ecology, vol. 28, no. 1, pp. 81-93, 2013.

M. J. Yoo, Szadkowski, E., and Wendel, J. F., “Homoeolog expression bias and expression level dominance in allopolyploid cotton”, Heredity, vol. 110, no. 2, pp. 171-180, 2013.

D. Allen McGranahan, Engle, D. M., Fuhlendorf, S. D., Winter, S. L., Miller, J. R., and Debinski, D. M., “Inconsistent outcomes of heterogeneity-based management underscore importance of matching evaluation to conservation objectives”, Environmental Science & Policy, vol. 31, pp. 53-60, 2013.

M. Schat, Schafer, J. L., Mudrak, E. L., Parag, H. A., Moloney, K. A., Holzapfel, C., Close, S. L., Menge, B. A., Van Appledorn, M., and Baker, M. E., “Influence of soil disturbance, seed pressure, aridity, and burn history on community structure of winter annuals in North American deserts”, 98th ESA Annual Meeting, 2013.

J. T. Page, Huynh, M. D., Liechty, Z. S., Grupp, K., Stelly, D., Hulse, A. M., Ashrafi, H., Van Deynze, A., Wendel, J. F., and Udall, J. A., “Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing”, G3: Genes| Genomes| Genetics, vol. 3, no. 10, pp. 1809-1818, 2013.

C. D. Kelly, Folinsbee, K. E., Adams, D. C., and Jennions, M. D., “Intraspecific sexual size and shape dimorphism in an Australian freshwater fish differs with respect to a biogeographic barrier and latitude”, Evolutionary Biology, vol. 40, no. 3, pp. 408-419, 2013.

D. Allen McGranahan, Engle, D. M., Miller, J. R., and Debinski, D. M., “An invasive grass increases live fuel proportion and reduces fire spread in a simulated grassland”, Ecosystems, vol. 16, no. 1, pp. 158-169, 2013.

J. F. Wendel, “Jeans, Genes, and The Independent Domestications Of Cotton”, Plant and Animal Genome XXI Conference. Plant and Animal Genome, 2013.

I. Ibáñez, Gornish, E. S., Buckley, L., Debinski, D. M., Hellmann, J., Helmuth, B., HilleRisLambers, J., Latimer, A. M., Miller‐Rushing, A. J., and Uriarte, M., “Moving forward in global‐change ecology: capitalizing on natural variability”, Ecology and evolution, vol. 3, no. 1, pp. 170-181, 2013.

D. Allen McGranahan, Engle, D. M., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., “Multivariate analysis of rangeland vegetation and soil organic carbon describes degradation, informs restoration and conservation”, Land, vol. 2, no. 3, pp. 328-350, 2013.

H. U. I. Yu and Nason, J. D., “Nuclear and chloroplast DNA phylogeography of Ficus hirta: obligate pollination mutualism and constraints on range expansion in response to climate change”, New Phytologist, vol. 197, no. 1, pp. 276-289, 2013.

M. Lloyd Collyer and Adams, D. C., “Phenotypic trajectory analysis: comparison of shape change patterns in evolution and ecology”, Hystrix, the Italian Journal of Mammalogy, vol. 24, no. 1, pp. 75-83, 2013.

C. P. Ceballos, Adams, D. C., Iverson, J. B., and Valenzuela, N., “Phylogenetic patterns of sexual size dimorphism in turtles and their implications for Rensch’s rule”, Evolutionary Biology, vol. 40, no. 2, pp. 194-208, 2013.

W. H Polley, Isbell, F. I., and Wilsey, B. J., “Plant functional traits improve diversity‐based predictions of temporal stability of grassland productivity”, Oikos, vol. 122, no. 9, pp. 1275-1282, 2013.

C. Mazancourt, Isbell, F., Larocque, A., Berendse, F., Luca, E., Grace, J. B., Haegeman, B., H Polley, W., Roscher, C., and Schmid, B., “Predicting ecosystem stability from community composition and biodiversity”, Ecology Letters, vol. 16, no. 5, pp. 617-625, 2013.

G. Hu, Koh, J., Yoo, M. ‐J., Grupp, K., Chen, S., and Wendel, J. F., “Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense”, New Phytologist, vol. 200, no. 2, pp. 570-582, 2013.

D. C. Adams, “Quantifying and comparing phylogenetic evolutionary rates for shape and other high-dimensional phenotypic data”, Systematic biology, p. syt105, 2013.

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