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P. Piras, Colangelo, P., Adams, D. C., Buscalioni, A., Cubo, J., Kotsakis, T., Meloro, C., and Raia, P., The Gavialis–Tomistoma debate: the contribution of skull ontogenetic allometry and growth trajectories to the study of crocodylian relationships, Evolution & development, vol. 12, no. 6, pp. 568-579, 2010.
L. E. Flagel and Wendel, J. F., Gene duplication and evolutionary novelty in plants, New Phytologist, vol. 183, no. 3, pp. 557-564, 2009.
A. S. Rivera, M Pankey, S., Plachetzki, D. C., Villacorta, C., Syme, A. E., Serb, J. M., Omilian, A. R., and Oakley, T. H., Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach, BMC evolutionary biology, vol. 10, no. 1, p. 123, 2010.
R. A. Rapp, Haigler, C. H., Flagel, L., Hovav, R. H., Udall, J. A., and Wendel, J. F., Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication, BMC biology, vol. 8, no. 1, p. 139, 2010.
K. Goodell, Elam, D., Nason, J., and Ellstrand, N., Gene flow among small populations of a self-incompatible plant: an interaction between demography and genetics., American Journal of Botany, vol. 84, no. 10, pp. 1362-1362, 1997.
J. L. Hamrick, Nason, J. D., Young, A., Boshier, D., and Boyle, T., Gene flow in forest trees., Forest conservation genetics: principles and practice, pp. 81-90, 2000.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective, Genetics, vol. 200, no. 1, pp. 91-104, 2015.
G. Hu, Koh, J., Yoo, M. - J., Chen, S., and Wendel, J. F., Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective, Genetics, 2015.
D. C. Adams and Collyer, M. L., A general framework for the analysis of phenotypic trajectories in evolutionary studies, Evolution, vol. 63, no. 5, pp. 1143-1154, 2009.
K. A. Moloney, A generalized algorithm for determining category size, Oecologia, vol. 69, no. 2, pp. 176-180, 1986.
D. C. Adams, A generalized K statistic for estimating phylogenetic signal from shape and other high-dimensional multivariate data, Systematic biology, vol. 63, no. 5, pp. 685-697, 2014.
K. L. Adams, Cronn, R., Percifield, R., and Wendel, J. F., Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing, Proceedings of the National Academy of Sciences, vol. 100, no. 8, pp. 4649-4654, 2003.
L. Schmidt, Hu, G., and Wendel, J. F., Genetic Analysis of Seed Storage Proteins in Gossypium, 2009.
A. Madlung and Wendel, J. F., Genetic and epigenetic aspects of polyploid evolution in plants, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
A. Salmon, Ainouche, M. L., and Wendel, J. F., Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae), Molecular ecology, vol. 14, no. 4, pp. 1163-1175, 2005.
J. Doebley, Stec, A., Wendel, J. F., and Edwards, M., Genetic and morphological analysis of a maize-teosinte F2 population: implications for the origin of maize, Proceedings of the National Academy of Sciences, vol. 87, no. 24, pp. 9888-9892, 1990.
M. G. Palacios, Gangloff, E. J., Reding, D. M., and Bronikowski, A. M., Genetic background and thermal environment differentially influence the ontogeny of immune components during early life in an ectothermic vertebrate, Journal of Animal Ecology, 2020.
M. Yoon Chung, Nason, J. D., Lopez-Pujol, J., Yamashiro, T., Yang, B. - Y., Luo, Y. - B., and Chung, M. Gi, Genetic consequences of fragmentation on populations of the terrestrial orchid Cymbidium goeringii, Biological Conservation, vol. 170, pp. 222-231, 2014.
J. F. Wendel and Parks, C. R., Genetic control of isozyme variation in Camellia japonica L., Journal of Heredity, vol. 73, no. 3, pp. 197-204, 1982.
C. R. Parks, Wendel, J. F., Sewell, M. M., and Qui, Y. L., Genetic control of isozyme variation in the genus Liriodendron L.(Magnoliaceae)., Journal of Heredity, vol. 81, no. 4, pp. 317-323, 1990.
C. R. Parks, Miller, N. G., Wendel, J. F., and McDougal, K. M., Genetic divergence within the genus Liriodendron (Magnoliaceae), Annals of the Missouri Botanical Garden, pp. 658-666, 1983.
D. R. DeJoode and Wendel, J. F., Genetic diversity and origin of the Hawaiian Islands cotton, Gossypium tomentosum, American Journal of Botany, pp. 1311-1319, 1992.
J. F. Wendel and Parks, C. R., Genetic diversity and population structure in Camellia japonica L.(Theaceae), American Journal of Botany, pp. 52-65, 1985.
D. M. Debinski, Genetic diversity assessment in a metapopulation of the butterfly Euphydryas gillettii, Biological Conservation, vol. 70, no. 1, pp. 25-31, 1994.
J. M. Pleasants and Wendel, J. F., Genetic diversity in a clonal narrow endemic, Erythronium propullans, and in its widespread progenitor, Erythronium albidum, American Journal of Botany, pp. 1136-1151, 1989.
J. F. Wendel, Rowley, R., and Stewart, J. McD., Genetic diversity in and phylogenetic relationships of the Brazilian endemic cotton, Gossypium mustelinum (Malvaceae), Plant Systematics and Evolution, vol. 192, no. 1-2, pp. 49-59, 1994.
J. L. Hamrick, Nason, J. D., Fleming, T. H., and Nassar, J. M., Genetic diversity in columnar cacti, Columnar cacti and their mutualists: Evolution, Ecology, and Conservation. University of Arizona Press, Tucson, AZ, pp. 122-133, 2002.
J. F. Wendel, Brubaker, C. L., and A Percival, E., Genetic diversity in Gossypium hirsutum and the origin of upland cotton, American Journal of Botany, pp. 1291-1310, 1992.
R. J. Percifield, Hawkins, J. S., McCoy, J. - A., Widrlechner, M. P., and Wendel, J. F., Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L., Planta medica, vol. 73, no. 15, p. 1614, 2007.
J. F. Wendel, Olson, P. D., and McD, J., Genetic diversity, introgression, and independent domestication of old world cultivated cottons, American Journal of Botany, pp. 1795-1806, 1989.
J. Rong, Pierce, G. J., Waghmare, V. N., Rogers, C. J., Desai, A., Chee, P. W., O May, L., Gannaway, J. R., Wendel, J. F., and Wilkins, T. A., Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton, Theoretical and applied genetics, vol. 111, no. 6, pp. 1137-1146, 2005.
V. N. Waghmare, Rong, J., Rogers, C. J., Pierce, G. J., Wendel, J. F., and Paterson, A. H., Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum, Theoretical and Applied Genetics, vol. 111, no. 4, pp. 665-676, 2005.
M. D. Edwards, Stuber, C. W., and Wendel, J. F., THE GENETIC-BASIS OF QUANTITATIVE TRAITS-EVIDENCE FROM AN EXPERIMENTAL MAIZE POPULATION, AMERICAN JOURNAL OF BOTANY, vol. 72, no. 6. BOTANICAL SOC AMER INC OHIO STATE UNIV-DEPT BOTANY 1735 NEIL AVE, COLUMBUS, OH 43210, pp. 875-876, 1985.
J. Rong, F Feltus, A., Waghmare, V. N., Pierce, G. J., Chee, P. W., Draye, X., Saranga, Y., Wright, R. J., Wilkins, T. A., and O May, L., Genetics of complex traits-Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development, Genetics, vol. 176, no. 4, pp. 2577-2588, 2007.
N. F. Weeden and Wendel, J. F., Genetics of plant isozymes, in Isozymes in plant biology, Springer Netherlands, 1989, pp. 46-72.
J. F. Wendel and Adams, K. L., Genome evolution and gene silencing in polyploid cotton, REGNUM VEGETABILE, vol. 143, p. 271, 2005.
J. F. Wendel, Genome evolution in polyploids, in Plant molecular evolution, Springer Netherlands, 2000, pp. 225-249.
J. Greilhuber and Leitch, I. J., Genome size and the phenotype, in Plant Genome Diversity Volume 2, Springer Vienna, 2013, pp. 323-344.
M. L. Ainouche and Wendel, J. F., Genome technologies, polyploidy and evolution, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
M. Branstetter, Childers, A. K., Cox-Foster, D., Hopper, K. R., Kapheim, K. M., Toth, A. L., and Worley, K. C., Genomes of the Hymenoptera, Current Opinion in Insect Science, 2017.
J. - F. Cao, Huang, J. - Q., Liu, X., Huang, C. - C., Zheng, Z. - S., Zhang, X. - F., Shangguan, X. - X., Wang, L. - J., Zhang, Y. - G., and Wendel, J. F., Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium, BMC genomics, vol. 21, no. 1, pp. 1-16, 2020.
C. Xu, Bai, Y., Lin, X., Zhao, N., Hu, L., Gong, Z., Wendel, J. F., and Liu, B., Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies, Molecular biology and evolution, vol. 31, no. 5, pp. 1066-1076, 2014.
B. Wang, Lin, Z., Li, X., Zhao, Y., Zhao, B., Wu, G., Ma, X., Wang, H., Xie, Y., and Li, Q., Genome-wide selection and genetic improvement during modern maize breeding, Nature Genetics, pp. 1-7, 2020.
P. Bilinski, Han, Y., Hufford, M. B., Lorant, A., Zhang, P., Estep, M. C., Jiang, J., and Ross-Ibarra, J., Genomic abundance is not predictive of tandem repeat localization in grass genomes, PloS one, vol. 12, no. 6, p. e0177896, 2017.
R. A. Rapp, Udall, J. A., and Wendel, J. F., Genomic expression dominance in allopolyploids, Bmc Biology, vol. 7, no. 1, p. 18, 2009.
G. Hu, Houston, N. L., Pathak, D., Schmidt, L., Thelen, J. J., and Wendel, J. F., Genomically biased accumulation of seed storage proteins in allopolyploid cotton, Genetics, vol. 189, no. 3, pp. 1103-1115, 2011.
G. Nieto Feliner, Casacuberta, J., and Wendel, J. F., Genomics of evolutionary novelty in hybrids and polyploids, Frontiers in Genetics, vol. 11, 2020.
E. S. Krafsur, Cummings, M. A., Endsley, M. A., Marquez, J. G., and Nason, J. D., Geographic differentiation in the house fly estimated by microsatellite and mitochondrial variation, Journal of Heredity, vol. 96, no. 5, pp. 502-512, 2005.
B. L. Bodensteiner, Warner, D. A., Iverson, J. B., Milne‐Zelman, C. L., Mitchell, T. S., Refsnider, J. M., and Janzen, F. J., Geographic variation in thermal sensitivity of early life traits in a widespread reptile, Ecology and Evolution, 2019.
N. Valenzuela, Adams, D. C., Bowden, R. M., Gauger, A. C., and Douglas, M. E., Geometric morphometric sex estimation for hatchling turtles: a powerful alternative for detecting subtle sexual shape dimorphism, Copeia, vol. 2004, no. 4, pp. 735-742, 2004.

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