Publications

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Journal Article
Z. Chen, Grover, C. E., Li, P., Wang, Y., Nie, H., Zhao, Y., Wang, M., Liu, F., Zhou, Z., and Wang, X., Molecular evolution of the plastid genome during diversification of the cotton genus, Molecular Phylogenetics and Evolution, 2017.
J. F. Wendel, McD, J., and Rettig, J. H., Molecular evidence for homoploid reticulate evolution among Australian species of Gossypium, Evolution, pp. 694-711, 1991.
J. F. Wendel and Percival, A. E., Molecular divergence in the Galapagos Islands—Baja California species pair, Gossypium klotzschianum andG. davidsonii (Malvaceae), Plant Systematics and Evolution, vol. 171, no. 1-4, pp. 99-115, 1990.
C. R. Parks and Wendel, J. F., Molecular divergence between Asian and North American species of Liriodendron (Magnoliaceae) with implications for interpretation of fossil floras, American Journal of Botany, pp. 1243-1256, 1990.
R. A. Rapp, Álvarez, I., and Wendel, J. F., Molecular confirmation of the position of Gossypium trifurcatum Vollesen, Genetic Resources and Crop Evolution, vol. 52, no. 6, pp. 749-753, 2005.
R. A. Rapp, Álvarez, I., and Wendel, J. F., Molecular confirmation of the position of Gossypium trifurcatum Vollesen, Genetic Resources and Crop Evolution, vol. 52, no. 6, pp. 749-753, 2005.
C. E. Grover, Zhu, X., Grupp, K. K., Jareczek, J. J., Gallagher, J. P., Szadkowski, E., Seijo, J. G., and Wendel, J. F., Molecular confirmation of species status for the allopolyploid cotton species, Gossypium ekmanianum Wittmack, Genetic Resources and Crop Evolution, vol. 62, no. 1, pp. 103-114, 2014.
B. W. Perry, Card, D. C., McGlothlin, J. W., Pasquesi, G. I. M., Adams, R. H., Schield, D. R., Hales, N. R., Corbin, A. B., Demuth, J. P., and Hoffmann, F. G., Molecular adaptations for sensing and securing prey and insight into amniote genome diversity from the garter snake genome, Genome biology and evolution, 2018.
D. A. Losure, Moloney, K. A., and Wilsey, B. J., Modes of crown vetch invasion and persistence, The American Midland Naturalist, vol. 161, no. 2, pp. 232-242, 2009.
D. A. Losure, Moloney, K. A., and Wilsey, B. J., Modes of crown vetch invasion and persistence, The American Midland Naturalist, vol. 161, no. 2, pp. 232-242, 2009.
F. Jeltsch, Milton, S. J., Dean, W. R. J., van Rooyen, N., and Moloney, K. A., Modelling the impact of small‐scale heterogeneities on tree—grass coexistence in semi‐arid savannas, Journal of Ecology, vol. 86, no. 5, pp. 780-793, 1998.
D. M. Debinski, Jakubauskas, M. E., and Kindscher, K., Modeling Spatial and Temporal Dynamics of Montane Meadows and Biodiversity in the Greater Yellowstone Ecosystem, University of Wyoming National Park Service Research Center Annual Report, vol. 24, no. 1, pp. 128-143, 2000.
D. Debinski, Jakubauskas, M., and Kindscher, K., Modeling Spatial and Temporal Dynamics of Montane Meadows and Biodiversity in the Greater Yellowstone Ecosystem, University of Wyoming National Park Service Research Center Annual Report, vol. 23, no. 1, pp. 152-158, 1999.
D. Debinski, Jakubauskas, M., and Kindscher, K., Modeling Spatial and Temporal Dynamics of Montane Meadows and Biodiversity in the Greater Yellowstone Ecosystem, University of Wyoming National Park Service Research Center Annual Report, vol. 21, no. 1, pp. 77-80, 1997.
D. Debinski, Jakubaukas, M., and Kindscher, K., Modeling Spatial and Temporal Dynamics of Montane Meadows and Biodiversity in the Greater Yellowstone Ecosystem, University of Wyoming National Park Service Research Center Annual Report, vol. 22, no. 1, pp. 59-64, 1998.
J. Tews, Moloney, K., and Jeltsch, F., Modeling seed dispersal in a variable environment: a case study of the fleshy-fruited savanna shrub Grewia flava, Ecological Modelling, vol. 175, no. 1, pp. 65-76, 2004.
A. M. Wright, Lloyd, G. T., and Hillis, D. M., Modeling character change heterogeneity in phylogenetic analyses of morphology through the use of priors, Systematic Biology, p. syv122, 2015.
A. C. Kraemer, Serb, J. M., and Adams, D. C., Model toxin level does not directly influence the evolution of mimicry in the salamander Plethodon cinereus, Evolutionary Ecology, pp. 1-13, 2015.
A. C. Kraemer, Serb, J. M., and Adams, D. C., Model toxin level does not directly influence the evolution of mimicry in the salamander Plethodon cinereus, Evolutionary Ecology, pp. 1-13, 2015.
S. Tavaré, Adams, D. C., Fedrigo, O., and Naylor, G. J. P., A model for phylogenetic inference using structural and chemical covariates., Pacific Symposium on Biocomputing, vol. 6, pp. 215-225, 2001.
W. Pett and Lavrov, D., Mito-nuclear interactions in the evolution of animal mitochondrial tRNA metabolism, Genome Biology and Evolution, p. evv124, 2015.
R. L. Small and Wendel, J. F., The mitochondrial genome of allotetraploid cotton (Gossypium L.)., The Journal of heredity, vol. 90, no. 1, pp. 251-253, 1998.
T. S. Schwartz, Arendsee, Z. W., and Bronikowski, A. M., Mitochondrial divergence between slow-and fast-aging garter snakes, Experimental Gerontology, 2015.
J. Dewoody, Nason, J. D., and Hipkins, V. D., Mitigating scoring errors in microsatellite data from wild populations, Molecular Ecology Notes, vol. 6, no. 4, pp. 951-957, 2006.
J. Pleasants, Milkweed restoration in the Midwest for monarch butterfly recovery: estimates of milkweeds lost, milkweeds remaining and milkweeds that must be added to increase the monarch population, Insect Conservation and Diversity, 2016.
A. P. Kuester and Nason, J. D., Microsatellite loci for Gossypium davidsonii (Malvaceae) and other D-genome, Sonoran Desert endemic cotton species, American journal of botany, vol. 99, no. 3, pp. e91-e93, 2012.
C. Grover, Kim, H., Wing, R. A., and Wendel, J. F., Microcolinearity in the Allotetraploid Gossypium hirsutum, Genome Exploitation: Data Mining the Genome, p. 231, 2007.
C. E. Grover, Kim, H. R., Wing, R. A., Paterson, A. H., and Wendel, J. F., Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium), The Plant Journal, vol. 50, no. 6, pp. 995-1006, 2007.
D. C. Adams, Methods for shape analysis of landmark data from articulated structures, Evolutionary Ecology Research, vol. 1, no. 8, pp. 959-970, 1999.
D. C. Adams, A METHOD FOR ASSESSING PHYLOGENETIC LEAST SQUARES MODELS FOR SHAPE AND OTHER HIGH‐DIMENSIONAL MULTIVARIATE DATA, Evolution, vol. 68, no. 9, pp. 2675-2688, 2014.
M. L. Collyer, Sekora, D. J., and Adams, D. C., A method for analysis of phenotypic change for phenotypes described by high-dimensional data, Heredity, 2014.
S. R. S. Dangal, Tian, H., Zhang, B., Pan, S., Lu, C., and Yang, J., Methane emission from global livestock sector during 1890‐2014: magnitude, trends and spatio‐temporal patterns, Global Change Biology, 2017.
M. S. Rosenberg, Adams, D. C., and Gurevitch, J., Metawin: Statistical software for meta-analysis with resampling tests., 1997.
J. Rong, F Feltus, A., Waghmare, V. N., Pierce, G. J., Chee, P. W., Draye, X., Saranga, Y., Wright, R. J., Wilkins, T. A., and O May, L., Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development, Genetics, vol. 176, no. 4, pp. 2577-2588, 2007.
E. A. Addis, Gangloff, E. J., Palacios, M. G., Carr, K. E., and Bronikowski, A. M., Merging the “Morphology–Performance–Fitness” Paradigm and Life-History Theory in the Eagle Lake Garter Snake Research Project, Integrative and Comparative Biology, 2017.
T. L. Dickson, Wilsey, B. J., Busby, R. R., and Gebhart, D. L., Melilotus officinalis (yellow sweetclover) causes large changes in community and ecosystem processes in both the presence and absence of a cover crop, Biological invasions, vol. 12, no. 1, pp. 65-76, 2010.
H. S. Rogers and Fricke, E. C., Maternal microbes complicate coexistence for tropical trees, Proceedings of the National Academy of Sciences, p. 201902736, 2019.
J. L. Conover, Karimi, N., Stenz, N., Ané, C., Grover, C. E., Skema, C., Tate, J. A., Wolff, K., Logan, S. A., and Wendel, J. F., A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?, Journal of Integrative Plant Biology, 2018.
J. W. Raich and Christensen, N. L., Malaysian dipterocarp forest: tree seedling and sapling species composition and small-scale disturbance patterns, National Geographic research (USA), 1989.
R. Hovav, Udall, J. A., Hovav, E., Rapp, R., Flagel, L., and Wendel, J. F., A majority of cotton genes are expressed in single-celled fiber, Planta, vol. 227, no. 2, pp. 319-329, 2008.
E. K. Baken and Adams, D. C., Macroevolution of arboreality in salamanders, Ecology and Evolution, 2019.
R. L. Small, Ryburn, J. A., and Wendel, J. F., Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.)., Molecular biology and evolution, vol. 16, no. 4, pp. 491-501, 1999.
Z. Yu, Lu, C., Cao, P., and Tian, H., Long‐term terrestrial carbon dynamics in the Midwestern United States during 1850‐2015: Roles of land use and cover change and agricultural management, Global change biology, 2018.
M. L. Pace, ,, and Wilkinson, G. M., Long‐term studies and reproducibility: Lessons from whole‐lake experiments, Limnology and Oceanography, 2018.
D. Debinski and Kindscher, K., Long-Term Monitoring of Montane Meadow Biodiversity in the Greater Yellowstone Ecosystem, University of Wyoming National Park Service Research Center Annual Report, vol. 25, no. 1, pp. 140-143, 2001.
J. F. Wendel, Lisch, D., Hu, G., and Mason, A. S., The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation, Current Opinion in Genetics & Development, vol. 49, pp. 1-7, 2018.
D. C. Adams, West, M. E., and Collyer, M. L., Location‐specific sympatric morphological divergence as a possible response to species interactions in West Virginia Plethodon salamander communities, Journal of Animal Ecology, vol. 76, no. 2, pp. 289-295, 2007.
J. D. Davis, Debinski, D. M., and Danielson, B. J., Local and landscape effects on the butterfly community in fragmented Midwest USA prairie habitats, Landscape Ecology, vol. 22, no. 9, pp. 1341-1354, 2007.
K. A. Suiter, Wendel, J. F., and J Case, S., LINKAGE-1: a PASCAL computer program for the detection and analysis of genetic linkage, Journal of Heredity, vol. 74, no. 3, pp. 203-204, 1983.
J. W. Raich, Russell, A. E., and Bedoya-Arrieta, R., Lignin and enhanced litter turnover in tree plantations of lowland Costa Rica, Forest ecology and management, vol. 239, no. 1, pp. 128-135, 2007.

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