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Journal Article
M. Branstetter, Childers, A. K., Cox-Foster, D., Hopper, K. R., Kapheim, K. M., Toth, A. L., and Worley, K. C., Genomes of the Hymenoptera, Current Opinion in Insect Science, 2017.
C. Xu, Bai, Y., Lin, X., Zhao, N., Hu, L., Gong, Z., Wendel, J. F., and Liu, B., Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies, Molecular biology and evolution, vol. 31, no. 5, pp. 1066-1076, 2014.
P. Bilinski, Han, Y., Hufford, M. B., Lorant, A., Zhang, P., Estep, M. C., Jiang, J., and Ross-Ibarra, J., Genomic abundance is not predictive of tandem repeat localization in grass genomes, PloS one, vol. 12, no. 6, p. e0177896, 2017.
R. A. Rapp, Udall, J. A., and Wendel, J. F., Genomic expression dominance in allopolyploids, Bmc Biology, vol. 7, no. 1, p. 18, 2009.
G. Hu, Houston, N. L., Pathak, D., Schmidt, L., Thelen, J. J., and Wendel, J. F., Genomically biased accumulation of seed storage proteins in allopolyploid cotton, Genetics, vol. 189, no. 3, pp. 1103-1115, 2011.
E. S. Krafsur, Cummings, M. A., Endsley, M. A., Marquez, J. G., and Nason, J. D., Geographic differentiation in the house fly estimated by microsatellite and mitochondrial variation, Journal of Heredity, vol. 96, no. 5, pp. 502-512, 2005.
B. L. Bodensteiner, Warner, D. A., Iverson, J. B., Milne‐Zelman, C. L., Mitchell, T. S., Refsnider, J. M., and Janzen, F. J., Geographic variation in thermal sensitivity of early life traits in a widespread reptile, Ecology and Evolution, 2019.
N. Valenzuela, Adams, D. C., Bowden, R. M., Gauger, A. C., and Douglas, M. E., Geometric morphometric sex estimation for hatchling turtles: a powerful alternative for detecting subtle sexual shape dimorphism, Copeia, vol. 2004, no. 4, pp. 735-742, 2004.
D. C. Adams, F Rohlf, J., and Slice, D. E., Geometric morphometrics: ten years of progress following the ‘revolution’, Italian Journal of Zoology, vol. 71, no. 1, pp. 5-16, 2004.
D. C. Adams and OTÁROLA‐CASTILLO, E. R. I. K., geomorph: an R package for the collection and analysis of geometric morphometric shape data, Methods in Ecology and Evolution, vol. 4, no. 4, pp. 393-399, 2013.
B. Chaudhary, Hovav, R., Rapp, R., Verma, N., Udall, J. A., and Wendel, J. F., Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense, Evolution & development, vol. 10, no. 5, pp. 567-582, 2008.
J. A. Udall, Swanson, J. M., Haller, K., Rapp, R. A., Sparks, M. E., Hatfield, J., Yu, Y., Wu, Y., Dowd, C., and Arpat, A. B., A global assembly of cotton ESTs, Genome research, vol. 16, no. 3, pp. 441-450, 2006.
J. W. Raich and Schlesinger, W. H., The global carbon dioxide flux in soil respiration and its relationship to vegetation and climate, Tellus B, vol. 44, no. 2, pp. 81-99, 1992.
Z. Yu, Wang, J., Liu, S., Rentch, J. S., Sun, P., and Lu, C., Global gross primary productivity and water use efficiency changes under drought stress, Environmental Research Letters, vol. 12, no. 1, p. 014016, 2017.
B. Zhang, Tian, H., Lu, C., Dangal, S. R. S., Yang, J., and Pan, S., Global manure nitrogen production and application in cropland during 1860–2014: a 5 arcmin gridded global dataset for Earth system modeling, Earth System Science Data, vol. 9, no. 2, pp. 667-678, 2017.
C. Lu and Tian, H., Global nitrogen and phosphorus fertilizer use for agriculture production in the past half century: shifted hot spots and nutrient imbalance, Earth System Science Data, vol. 9, no. 1, p. 181, 2017.
J. W. Raich and Potter, C. S., Global patterns of carbon dioxide emission from soils, Global Biogeochemical Cycles, vol. 9, no. 1, pp. 23-36, 1995.
J. W. Raich and Potter, C. S., Global patterns of carbon dioxide emissions from soils on a 0.5 degree grid cell basis, ORNL/CDIAC DB-1015 (3-1996). Carbon Dioxide Information Analysis Center, US Department of Energy, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA, 1996.
K. J. Nadelhoffer, Raich, J. W., and Aber, J. D., A global trend in belowground carbon allocation: comment, Ecology, vol. 79, no. 5, pp. 1822-1825, 1998.
J. McD. Stewart, Craven, L. A., Brubaker, C., and Wendel, J. F., Gossypium anapoides (Malvaceae), a new species from Western Australia, Novon, vol. 23, no. 4, pp. 447-451, 2015.
D. M. Debinski, Caruthers, J. C., Cook, D., Crowley, J., and Wickham, H., Gradient-based habitat affinities predict species vulnerability to drought, Ecology, vol. 94, no. 5, pp. 1036-1045, 2013.
T. L. Dickson, Wilsey, B. J., Busby, R. R., and Gebhart, D. L., Grassland plant composition alters vehicular disturbance effects in Kansas, USA, Environmental management, vol. 41, no. 5, pp. 676-684, 2008.
D. Allen McGranahan, Engle, D. M., Wilsey, B. J., Fuhlendorf, S. D., Miller, J. R., and Debinski, D. M., Grazing and an invasive grass confound spatial pattern of exotic and native grassland plant species richness, Basic and Applied Ecology, vol. 13, no. 8, pp. 654-662, 2012.
M. W. Hester, Wilsey, B. J., and Mendelssohn, I. A., Grazing of Panicum amarum in a Louisiana barrier island dune plant community: management implications for dune restoration projects, Ocean & Coastal Management, vol. 23, no. 3, pp. 213-224, 1994.
S. M. Mitchell, Bodensteiner, B. L., Strickland, J. T., Quick, J. K., and Janzen, F. J., Habitat alteration and survival rates of the ornate box turtle, The Journal of Wildlife Management, 2016.
S. A. Kelchner and Wendel, J. F., Hairpins create minute inversions in non-coding regions of chloroplast DNA, Current genetics, vol. 30, no. 3, pp. 259-262, 1996.
C. L. Richards and Wendel, J. F., The hairy problem of epigenetics in evolution, New Phytologist, vol. 191, no. 1, pp. 7-9, 2011.
T. M. Anderson, Griffith, D. M., Grace, J. B., Lind, E. M., Adler, P. B., Biederman, L. A., Blumenthal, D. M., Daleo, P., Firn, J., and Hagenah, N., Herbivory and eutrophication mediate grassland plant nutrient responses across a global climatic gradient., Ecology, 2018.
S. M. Thomas and Moloney, K. A., Hierarchical factors impacting the distribution of an invasive species: landscape context and propagule pressure, Landscape ecology, vol. 28, no. 1, pp. 81-93, 2013.
J. M. Serb and Oakley, T. H., Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology, Bioessays, vol. 27, no. 11, pp. 1158-1166, 2005.
J. M. M. Lewthwaite, Debinski, D. M., and Kerr, J. T., High community turnover and dispersal limitation relative to rapid climate change, Global Ecology and Biogeography, 2016.
F. Isbell, Calcagno, V., Hector, A., Connolly, J., W Harpole, S., Reich, P. B., Scherer-Lorenzen, M., Schmid, B., Tilman, D., and van Ruijven, J., High plant diversity is needed to maintain ecosystem services, Nature, vol. 477, no. 7363, pp. 199-202, 2011.
D. C. Adams and Beachy, C. K., Historical explanations of phenotypic variation in the plethodontid salamander Gyrinophilus porphyriticus, Herpetologica, pp. 353-364, 2001.
J. D. Nason, Hamrick, J. L., Fleming, T. H., and Tonsor, S., Historical vicariance and postglacial colonization effects on the evolution of genetic structure in Lophocereus, a Sonoran Desert columnar cactus, Evolution, vol. 56, no. 11, pp. 2214-2226, 2002.
T. Bureau, Hu, G., Hawkins, J. S., Grover, C. E., and Wendel, J. F., The history and disposition of transposable elements in polyploid Gossypium, Genome, vol. 53, no. 8, pp. 599-607, 2010.
C. E. Grover, Gallagher, J. P., Szadkowski, E. P., Yoo, M. J., Flagel, L. E., and Wendel, J. F., Homoeolog expression bias and expression level dominance in allopolyploids, New Phytologist, vol. 196, no. 4, pp. 966-971, 2012.
M. J. Yoo, Szadkowski, E., and Wendel, J. F., Homoeolog expression bias and expression level dominance in allopolyploid cotton, Heredity, vol. 110, no. 2, pp. 171-180, 2013.
A. Salmon, Flagel, L., Ying, B., Udall, J. A., and Wendel, J. F., Homoeologous nonreciprocal recombination in polyploid cotton, New Phytologist, vol. 186, no. 1, pp. 123-134, 2010.
A. G. Dolezal, Hendrix, S. D., Scavo, N. A., Carrillo-Tripp, J., Harris, M. A., M Wheelock, J., O’Neal, M. E., and Toth, A. L., Honey Bee Viruses in Wild Bees: Viral Prevalence, Loads, and Experimental Inoculation, PLOS ONE, vol. 11, no. 11, p. e0166190, 2016.
E. J. Gangloff, Holden, K. G., Telemeco, R. S., Baumgard, L. H., and Bronikowski, A. M., Hormonal and metabolic responses to upper temperature extremes in divergent life-history ecotypes of a garter snake, Journal of Experimental Biology, p. jeb. 143107, 2016.
J. O. StiremanIII, Nason, J. D., and Heard, S. B., Host‐associated genetic differentiation in phytophagous insects: general phenomenon or isolated exceptions? Evidence from a goldenrod‐insect community, Evolution, vol. 59, no. 12, pp. 2573-2587, 2005.
J. D. Nason, Heard, S. B., and Williams, F. R., Host‐associated genetic differentiation in the goldenrod elliptical‐gall moth, Gnorimoschema gallaesolidaginis (Lepidoptera: Gelechiidae), Evolution, vol. 56, no. 7, pp. 1475-1488, 2002.
K. Klier, Leoschke, M. J., and Wendel, J. F., Hybridization and introgression in white and yellow ladyslipper orchids (Cypripedium candidum and C. pubescens), Journal of Heredity, vol. 82, no. 4, pp. 305-318, 1991.
J. Dewoody, Nason, J. D., and Smith, M., Hybridization between the threatened herb Boltonia decurrens (Asteraceae) and its widespread congener, B. asteroides, Botany, vol. 89, no. 3, pp. 191-201, 2011.
D. L. Peterson, Jakubauskas, M. E., Kindscher, K., and Debinski, D., HYPERSPECTRAL REMOTE SENSING OF NONFORESTED MONTANE VEGETATION COMMUNITIES, 3rd international conference on geospatial information in agriculture and forestry, pp. 5-7, 2001.
J. S. Hawkins, Pleasants, J., and Wendel, J. F., Identification of AFLP markers that discriminate between cultivated cotton and the Hawaiian island endemic, Gossypium tomentosumNuttall ex Seeman, Genetic Resources and Crop Evolution, vol. 52, no. 8, pp. 1069-1078, 2005.
D. C. Campbell, Johnson, P. D., Williams, J. D., Rindsberg, A. K., Serb, J. M., Small, K. K., and Lydeard, C., Identification of ‘extinct’freshwater mussel species using DNA barcoding, Molecular Ecology Resources, vol. 8, no. 4, pp. 711-724, 2008.
K. Kindscher, Fraser, A., Jakubauskas, M. E., and Debinski, D. M., Identifying wetland meadows in Grand Teton National Park using remote sensing and average wetland values, Wetlands Ecology and Management, vol. 5, no. 4, pp. 265-273, 1997.
K. A. Yurkonis, Wilsey, B. J., Moloney, K. A., and van der Valk, A. G., The impact of seeding method on diversity and plant distribution in two restored grasslands, Restoration Ecology, vol. 18, no. 3, pp. 311-321, 2010.
W. H Polley, Derner, J. D., Jackson, R. B., Wilsey, B. J., and Fay, P. A., Impacts of climate change drivers on C4 grassland productivity: scaling driver effects through the plant community, Journal of experimental botany, p. eru009, 2014.

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