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D. C. Adams, A generalized K statistic for estimating phylogenetic signal from shape and other high-dimensional multivariate data, Systematic biology, vol. 63, no. 5, pp. 685-697, 2014.
K. L. Adams, Cronn, R., Percifield, R., and Wendel, J. F., Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing, Proceedings of the National Academy of Sciences, vol. 100, no. 8, pp. 4649-4654, 2003.
L. Schmidt, Hu, G., and Wendel, J. F., Genetic Analysis of Seed Storage Proteins in Gossypium, 2009.
A. Madlung and Wendel, J. F., Genetic and epigenetic aspects of polyploid evolution in plants, Cytogenetic and genome research, vol. 140, no. 2-4, pp. 270-285, 2013.
A. Salmon, Ainouche, M. L., and Wendel, J. F., Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae), Molecular ecology, vol. 14, no. 4, pp. 1163-1175, 2005.
J. Doebley, Stec, A., Wendel, J. F., and Edwards, M., Genetic and morphological analysis of a maize-teosinte F2 population: implications for the origin of maize, Proceedings of the National Academy of Sciences, vol. 87, no. 24, pp. 9888-9892, 1990.
M. G. Palacios, Gangloff, E. J., Reding, D. M., and Bronikowski, A. M., Genetic background and thermal environment differentially influence the ontogeny of immune components during early life in an ectothermic vertebrate, Journal of Animal Ecology, 2020.
M. Yoon Chung, Nason, J. D., Lopez-Pujol, J., Yamashiro, T., Yang, B. - Y., Luo, Y. - B., and Chung, M. Gi, Genetic consequences of fragmentation on populations of the terrestrial orchid Cymbidium goeringii, Biological Conservation, vol. 170, pp. 222-231, 2014.
J. F. Wendel and Parks, C. R., Genetic control of isozyme variation in Camellia japonica L., Journal of Heredity, vol. 73, no. 3, pp. 197-204, 1982.
C. R. Parks, Wendel, J. F., Sewell, M. M., and Qui, Y. L., Genetic control of isozyme variation in the genus Liriodendron L.(Magnoliaceae)., Journal of Heredity, vol. 81, no. 4, pp. 317-323, 1990.
C. R. Parks, Miller, N. G., Wendel, J. F., and McDougal, K. M., Genetic divergence within the genus Liriodendron (Magnoliaceae), Annals of the Missouri Botanical Garden, pp. 658-666, 1983.
D. R. DeJoode and Wendel, J. F., Genetic diversity and origin of the Hawaiian Islands cotton, Gossypium tomentosum, American Journal of Botany, pp. 1311-1319, 1992.
J. F. Wendel and Parks, C. R., Genetic diversity and population structure in Camellia japonica L.(Theaceae), American Journal of Botany, pp. 52-65, 1985.
D. M. Debinski, Genetic diversity assessment in a metapopulation of the butterfly Euphydryas gillettii, Biological Conservation, vol. 70, no. 1, pp. 25-31, 1994.
J. M. Pleasants and Wendel, J. F., Genetic diversity in a clonal narrow endemic, Erythronium propullans, and in its widespread progenitor, Erythronium albidum, American Journal of Botany, pp. 1136-1151, 1989.
J. F. Wendel, Rowley, R., and Stewart, J. McD., Genetic diversity in and phylogenetic relationships of the Brazilian endemic cotton, Gossypium mustelinum (Malvaceae), Plant Systematics and Evolution, vol. 192, no. 1-2, pp. 49-59, 1994.
J. L. Hamrick, Nason, J. D., Fleming, T. H., and Nassar, J. M., Genetic diversity in columnar cacti, Columnar cacti and their mutualists: Evolution, Ecology, and Conservation. University of Arizona Press, Tucson, AZ, pp. 122-133, 2002.
J. F. Wendel, Brubaker, C. L., and A Percival, E., Genetic diversity in Gossypium hirsutum and the origin of upland cotton, American Journal of Botany, pp. 1291-1310, 1992.
R. J. Percifield, Hawkins, J. S., McCoy, J. - A., Widrlechner, M. P., and Wendel, J. F., Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L., Planta medica, vol. 73, no. 15, p. 1614, 2007.
J. F. Wendel, Olson, P. D., and McD, J., Genetic diversity, introgression, and independent domestication of old world cultivated cottons, American Journal of Botany, pp. 1795-1806, 1989.
J. Rong, Pierce, G. J., Waghmare, V. N., Rogers, C. J., Desai, A., Chee, P. W., O May, L., Gannaway, J. R., Wendel, J. F., and Wilkins, T. A., Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton, Theoretical and applied genetics, vol. 111, no. 6, pp. 1137-1146, 2005.
V. N. Waghmare, Rong, J., Rogers, C. J., Pierce, G. J., Wendel, J. F., and Paterson, A. H., Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum, Theoretical and Applied Genetics, vol. 111, no. 4, pp. 665-676, 2005.
J. Rong, F Feltus, A., Waghmare, V. N., Pierce, G. J., Chee, P. W., Draye, X., Saranga, Y., Wright, R. J., Wilkins, T. A., and O May, L., Genetics of complex traits-Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development, Genetics, vol. 176, no. 4, pp. 2577-2588, 2007.
J. F. Wendel and Adams, K. L., Genome evolution and gene silencing in polyploid cotton, REGNUM VEGETABILE, vol. 143, p. 271, 2005.
M. Branstetter, Childers, A. K., Cox-Foster, D., Hopper, K. R., Kapheim, K. M., Toth, A. L., and Worley, K. C., Genomes of the Hymenoptera, Current Opinion in Insect Science, 2017.
J. - F. Cao, Huang, J. - Q., Liu, X., Huang, C. - C., Zheng, Z. - S., Zhang, X. - F., Shangguan, X. - X., Wang, L. - J., Zhang, Y. - G., and Wendel, J. F., Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium, BMC genomics, vol. 21, no. 1, pp. 1-16, 2020.
C. Xu, Bai, Y., Lin, X., Zhao, N., Hu, L., Gong, Z., Wendel, J. F., and Liu, B., Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies, Molecular biology and evolution, vol. 31, no. 5, pp. 1066-1076, 2014.
B. Wang, Lin, Z., Li, X., Zhao, Y., Zhao, B., Wu, G., Ma, X., Wang, H., Xie, Y., and Li, Q., Genome-wide selection and genetic improvement during modern maize breeding, Nature Genetics, pp. 1-7, 2020.
P. Bilinski, Han, Y., Hufford, M. B., Lorant, A., Zhang, P., Estep, M. C., Jiang, J., and Ross-Ibarra, J., Genomic abundance is not predictive of tandem repeat localization in grass genomes, PloS one, vol. 12, no. 6, p. e0177896, 2017.
R. A. Rapp, Udall, J. A., and Wendel, J. F., Genomic expression dominance in allopolyploids, Bmc Biology, vol. 7, no. 1, p. 18, 2009.
Y. Wu, Lin, F., Zhou, Y., Wang, J., Sun, S., Wang, B., Zhang, Z., Li, G., Lin, X., and Wang, X., Genomic mosaicism due to homoeologous exchange generates extensive phenotypic diversity in nascent allopolyploids, National Science Review, 2020.
G. Hu, Houston, N. L., Pathak, D., Schmidt, L., Thelen, J. J., and Wendel, J. F., Genomically biased accumulation of seed storage proteins in allopolyploid cotton, Genetics, vol. 189, no. 3, pp. 1103-1115, 2011.
G. Nieto Feliner, Casacuberta, J., and Wendel, J. F., Genomics of evolutionary novelty in hybrids and polyploids, Frontiers in Genetics, vol. 11, 2020.
E. S. Krafsur, Cummings, M. A., Endsley, M. A., Marquez, J. G., and Nason, J. D., Geographic differentiation in the house fly estimated by microsatellite and mitochondrial variation, Journal of Heredity, vol. 96, no. 5, pp. 502-512, 2005.
B. L. Bodensteiner, Warner, D. A., Iverson, J. B., Milne‐Zelman, C. L., Mitchell, T. S., Refsnider, J. M., and Janzen, F. J., Geographic variation in thermal sensitivity of early life traits in a widespread reptile, Ecology and Evolution, 2019.
N. Valenzuela, Adams, D. C., Bowden, R. M., Gauger, A. C., and Douglas, M. E., Geometric morphometric sex estimation for hatchling turtles: a powerful alternative for detecting subtle sexual shape dimorphism, Copeia, vol. 2004, no. 4, pp. 735-742, 2004.
D. C. Adams, F Rohlf, J., and Slice, D. E., Geometric morphometrics: ten years of progress following the ‘revolution’, Italian Journal of Zoology, vol. 71, no. 1, pp. 5-16, 2004.
D. C. Adams and OTÁROLA‐CASTILLO, E. R. I. K., geomorph: an R package for the collection and analysis of geometric morphometric shape data, Methods in Ecology and Evolution, vol. 4, no. 4, pp. 393-399, 2013.
B. Chaudhary, Hovav, R., Rapp, R., Verma, N., Udall, J. A., and Wendel, J. F., Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense, Evolution & development, vol. 10, no. 5, pp. 567-582, 2008.
J. A. Udall, Swanson, J. M., Haller, K., Rapp, R. A., Sparks, M. E., Hatfield, J., Yu, Y., Wu, Y., Dowd, C., and Arpat, A. B., A global assembly of cotton ESTs, Genome research, vol. 16, no. 3, pp. 441-450, 2006.
J. W. Raich and Schlesinger, W. H., The global carbon dioxide flux in soil respiration and its relationship to vegetation and climate, Tellus B, vol. 44, no. 2, pp. 81-99, 1992.
Z. Yu, Wang, J., Liu, S., Rentch, J. S., Sun, P., and Lu, C., Global gross primary productivity and water use efficiency changes under drought stress, Environmental Research Letters, vol. 12, no. 1, p. 014016, 2017.
B. Zhang, Tian, H., Lu, C., Dangal, S. R. S., Yang, J., and Pan, S., Global manure nitrogen production and application in cropland during 1860–2014: a 5 arcmin gridded global dataset for Earth system modeling, Earth System Science Data, vol. 9, no. 2, pp. 667-678, 2017.
C. Lu and Tian, H., Global nitrogen and phosphorus fertilizer use for agriculture production in the past half century: shifted hot spots and nutrient imbalance, Earth System Science Data, vol. 9, no. 1, p. 181, 2017.
J. W. Raich and Potter, C. S., Global patterns of carbon dioxide emission from soils, Global Biogeochemical Cycles, vol. 9, no. 1, pp. 23-36, 1995.
J. W. Raich and Potter, C. S., Global patterns of carbon dioxide emissions from soils on a 0.5 degree grid cell basis, ORNL/CDIAC DB-1015 (3-1996). Carbon Dioxide Information Analysis Center, US Department of Energy, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA, 1996.
K. J. Nadelhoffer, Raich, J. W., and Aber, J. D., A global trend in belowground carbon allocation: comment, Ecology, vol. 79, no. 5, pp. 1822-1825, 1998.
A. Walton, Sheehan, M. J., and Toth, A. L., Going wild for functional genomics: RNA interference as a tool to study gene-behavior associations in diverse species and ecological contexts, Hormones and Behavior, vol. 124, p. 104774, 2020.
J. McD. Stewart, Craven, L. A., Brubaker, C., and Wendel, J. F., Gossypium anapoides (Malvaceae), a new species from Western Australia, Novon, vol. 23, no. 4, pp. 447-451, 2015.
D. M. Debinski, Caruthers, J. C., Cook, D., Crowley, J., and Wickham, H., Gradient-based habitat affinities predict species vulnerability to drought, Ecology, vol. 94, no. 5, pp. 1036-1045, 2013.