Publications

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2010
L. E. Flagel and Wendel, J. F., Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation, New Phytologist, vol. 186, no. 1, pp. 184-193, 2010.
M. E. Dornbush and Wilsey, B. J., Experimental manipulation of soil depth alters species richness and co‐occurrence in restored tallgrass prairie, Journal of ecology, vol. 98, no. 1, pp. 117-125, 2010.
M. Yoon Chung, Nason, J. D., Sun, B. - Y., Moon, M. - O., Chung, J. Min, Park, C. - W., and Chung, M. Gi, Extremely low levels of genetic variation in the critically endangered monotypic fern genus Mankyua chejuense (Ophioglossaceae) from Korea: Implications for conservation, Biochemical Systematics and Ecology, vol. 38, no. 5, pp. 888-896, 2010.
P. Piras, Colangelo, P., Adams, D. C., Buscalioni, A., Cubo, J., Kotsakis, T., Meloro, C., and Raia, P., The Gavialis–Tomistoma debate: the contribution of skull ontogenetic allometry and growth trajectories to the study of crocodylian relationships, Evolution & development, vol. 12, no. 6, pp. 568-579, 2010.
A. S. Rivera, M Pankey, S., Plachetzki, D. C., Villacorta, C., Syme, A. E., Serb, J. M., Omilian, A. R., and Oakley, T. H., Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach, BMC evolutionary biology, vol. 10, no. 1, p. 123, 2010.
R. A. Rapp, Haigler, C. H., Flagel, L., Hovav, R. H., Udall, J. A., and Wendel, J. F., Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication, BMC biology, vol. 8, no. 1, p. 139, 2010.
T. Bureau, Hu, G., Hawkins, J. S., Grover, C. E., and Wendel, J. F., The history and disposition of transposable elements in polyploid Gossypium, Genome, vol. 53, no. 8, pp. 599-607, 2010.
A. Salmon, Flagel, L., Ying, B., Udall, J. A., and Wendel, J. F., Homoeologous nonreciprocal recombination in polyploid cotton, New Phytologist, vol. 186, no. 1, pp. 123-134, 2010.
K. A. Yurkonis, Wilsey, B. J., Moloney, K. A., and van der Valk, A. G., The impact of seeding method on diversity and plant distribution in two restored grasslands, Restoration Ecology, vol. 18, no. 3, pp. 311-321, 2010.
A. E. Russell, Raich, J. W., Arrieta, R. Bedoya, Valverde-Barrantes, O., and González, E., Impacts of individual tree species on carbon dynamics in a moist tropical forest environment, Ecological Applications, vol. 20, no. 4, pp. 1087-1100, 2010.
R. J. Dyer, Nason, J. D., and Garrick, R. C., Landscape modelling of gene flow: improved power using conditional genetic distance derived from the topology of population networks, Molecular Ecology, vol. 19, no. 17, pp. 3746-3759, 2010.
E. Öckinger, Schweiger, O., Crist, T. O., Debinski, D. M., Krauss, J., Kuussaari, M., Petersen, J. D., Pöyry, J., Settele, J., and Summerville, K. S., Life‐history traits predict species responses to habitat area and isolation: a cross‐continental synthesis, Ecology letters, vol. 13, no. 8, pp. 969-979, 2010.
T. L. Dickson, Wilsey, B. J., Busby, R. R., and Gebhart, D. L., Melilotus officinalis (yellow sweetclover) causes large changes in community and ecosystem processes in both the presence and absence of a cover crop, Biological invasions, vol. 12, no. 1, pp. 65-76, 2010.
D. M. Debinski, Wickham, H., Kindscher, K., Caruthers, J. C., and Germino, M., Montane meadow change during drought varies with background hydrologic regime and plant functional group, Ecology, vol. 91, no. 6, pp. 1672-1681, 2010.
Y. Bao, Wendel, J. F., and Ge, S., Multiple patterns of rDNA evolution following polyploidy in Oryza, Molecular phylogenetics and evolution, vol. 55, no. 1, pp. 136-142, 2010.
D. C. Adams and Nistri, A., Ontogenetic convergence and evolution of foot morphology in European cave salamanders (Family: Plethodontidae), BMC Evolutionary Biology, vol. 10, no. 1, p. 216, 2010.
B. S. Bowen, Debinski, D. M., and Janzen, F. J., OPS 5-1: Evolution of institutional cultures to diversify the professoriate, The 95th ESA Annual Meeting, 2010.
J. F. Wendel, Brubaker, C. L., and Seelanan, T., The origin and evolution of Gossypium, in Physiology of cotton, Springer Netherlands, 2010, pp. 1-18.
D. C. Adams, Parallel evolution of character displacement driven by competitive selection in terrestrial salamanders, BMC Evolutionary Biology, vol. 10, no. 1, p. 72, 2010.
L. Betancur, Singh, B., Rapp, R. A., Wendel, J. F., M Marks, D., Roberts, A. W., and Haigler, C. H., Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber, Journal of integrative plant biology, vol. 52, no. 2, pp. 205-220, 2010.
J. M. Orlofske, Ohnesorg, W. J., and Debinski, D. M., Potential terrestrial arthropod indicators for tallgrass prairie restoration in Iowa, Ecological Restoration, vol. 28, no. 3, pp. 250-253, 2010.
B. J. Wilsey, Productivity and subordinate species response to dominant grass species and seed source during restoration, Restoration Ecology, vol. 18, no. 5, pp. 628-637, 2010.
L. C. Jesse, Nason, J. D., Obrycki, J. J., and Moloney, K. A., Quantifying the levels of sexual reproduction and clonal spread in the invasive plant, Rosa multiflora, Biological invasions, vol. 12, no. 6, pp. 1847-1854, 2010.
C. E. Grover and Wendel, J. F., Recent insights into mechanisms of genome size change in plants, Journal of Botany, vol. 2010, 2010.
J. M. Pleasants and Wendel, J. F., Reproductive and Pollination Biology of the Endemic Hawaiian Cotton, Gossypium tomentosum (Malvaceae) 1, Pacific Science, vol. 64, no. 1, pp. 45-55, 2010.
K. A. Yurkonis, Wilsey, B. J., Moloney, K. A., Drobney, P., and Larson, D. L., Seeding Method Influences Warm‐Season Grass Abundance and Distribution but not Local Diversity in Grassland Restoration, Restoration Ecology, vol. 18, no. s2, pp. 344-353, 2010.
A. H. Paterson, Rong, J. -kang, Gingle, A. R., Chee, P. W., Dennis, E. S., Llewellyn, D., III, L. S. Dure, Haigler, C., Myers, G. O., and Peterson, D. G., Sequencing and utilization of the Gossypium genomes, Tropical Plant Biology, vol. 3, no. 2, pp. 71-74, 2010.
C. D. Kelly and Adams, D. C., Sexual selection, ontogenetic acceleration, and hypermorphosis generates male trimorphism in Wellington tree weta, Evolutionary Biology, vol. 37, no. 4, pp. 200-209, 2010.
H. U. I. Yu, Nason, J. D., Ge, X., and Zeng, J., Slatkin’s Paradox: when direct observation and realized gene flow disagree. A case study in Ficus, Molecular Ecology, vol. 19, no. 20, pp. 4441-4453, 2010.
D. M. Debinski, Wickham, H., Kindscher, K., Caruthers, J., and Germino, M. J., SYMP 22-8: Montane meadow change during drought varies with background hydrologic regime and plant functional group, The 95th ESA Annual Meeting, 2010.
J. M. Serb, Orr, M. C., and M Greenlee, H. West, Using evolutionary conserved modules in gene networks as a strategy to leverage high throughput gene expression queries, PloS one, vol. 5, no. 10.1371, 2010.
2009
D. C. Adams, Berns, C. M., Kozak, K. H., and Wiens, J. J., Are rates of species diversification correlated with rates of morphological evolution?, Proceedings of the Royal Society of London B: Biological Sciences, p. rspb. 2009.0543, 2009.
T. L. Dickson and Wilsey, B. J., Biodiversity and tallgrass prairie decomposition: the relative importance of species identity, evenness, richness, and micro-topography, Plant ecology, vol. 201, no. 2, pp. 639-649, 2009.
B. J. Wilsey, Teaschner, T. B., Daneshgar, P. P., Isbell, F. I., and H Polley, W., Biodiversity maintenance mechanisms differ between native and novel exotic‐dominated communities, Ecology Letters, vol. 12, no. 5, pp. 432-442, 2009.
F. I. Isbell, H Polley, W., and Wilsey, B. J., Biodiversity, productivity and the temporal stability of productivity: patterns and processes, Ecology letters, vol. 12, no. 5, pp. 443-451, 2009.
B. F. M. Olechnowski, Debinski, D. M., Drobney, P., Viste-Sparkman, K., and Reed, W. T., Changes in vegetation structure through time in a restored tallgrass prairie ecosystem and implications for avian diversity and community composition, Ecological Restoration, vol. 27, no. 4, pp. 449-457, 2009.
Y. Jin Chun, Nason, J. D., and Moloney, K. A., Comparison of quantitative and molecular genetic variation of native vs. invasive populations of purple loosestrife (Lythrum salicaria L., Lythraceae), Molecular Ecology, vol. 18, no. 14, pp. 3020-3035, 2009.
L. E. Flagel, Chen, L., Chaudhary, B., and Wendel, J. F., Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton, Journal of heredity, p. esp003, 2009.
L. Gutiérrez, Nason, J. D., and Jannink, J. - L., Diversity and mega-targets of selection from the characterization of a barley collection, Crop science, vol. 49, no. 2, pp. 483-497, 2009.
K. A. Moloney, Knaus, F., and Dietz, H., Evidence for a shift in life-history strategy during the secondary phase of a plant invasion, Biological invasions, vol. 11, no. 3, pp. 625-634, 2009.
J. F. Wendel, Brubaker, C., Álvarez, I., Cronn, R., and Stewart, J. McD., Evolution and natural history of the cotton genus, in Genetics and genomics of cotton, Springer US, 2009, pp. 3-22.
J. A. Sherwood and Debinski, D. M., An Examination of Reproductive Phenology with Implications for Understanding Climate Change Effects, University of Wyoming National Park Service Research Center Annual Report, vol. 32, no. 1, pp. 63-67, 2009.
J. W. Raich, Russell, A. E., and Valverde-Barrantes, O., Fine root decay rates vary widely among lowland tropical tree species, Oecologia, vol. 161, no. 2, pp. 325-330, 2009.
L. E. Flagel and Wendel, J. F., Gene duplication and evolutionary novelty in plants, New Phytologist, vol. 183, no. 3, pp. 557-564, 2009.
D. C. Adams and Collyer, M. L., A general framework for the analysis of phenotypic trajectories in evolutionary studies, Evolution, vol. 63, no. 5, pp. 1143-1154, 2009.
L. Schmidt, Hu, G., and Wendel, J. F., Genetic Analysis of Seed Storage Proteins in Gossypium, 2009.
R. A. Rapp, Udall, J. A., and Wendel, J. F., Genomic expression dominance in allopolyploids, Bmc Biology, vol. 7, no. 1, p. 18, 2009.
K. M. Butterworth, Adams, D. C., Horner, H. T., and Wendel, J. F., Initiation and early development of fiber in wild and cultivated cotton, International Journal of Plant Sciences, vol. 170, no. 5, pp. 561-574, 2009.
J. Deitloff, Church, J. O., Adams, D. C., and Jaeger, R. G., Interspecific agonistic behaviors in a salamander community: Implications for alpha selection, Herpetologica, vol. 65, no. 2, pp. 174-182, 2009.
A. H. Hemmingsen, Roe, K. J., and Serb, J. M., Isolation and characterization of nine microsatellite markers for the endangered winged-mapleleaf mussel, Quadrula fragosa (Bivalvia, Unionidae), Mol Ecol Resour, vol. 9, pp. 1460-1466, 2009.

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