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A
J. A. Audino, Serb, J. M., and Marian, J. Eduardo A. R., Phylogeny and anatomy of marine mussels (Bivalvia: Mytilidae) reveal convergent evolution of siphon traits, Zoological Journal of the Linnean Society, 2020.
J. Alves Audino, Serb, J. Marie, and Marian, J. Eduardo Am, Hard to get, easy to lose: Evolution of mantle photoreceptor organs in bivalves (Bivalvia, Pteriomorphia), Evolution, 2020.
J. N. Auckland, Debinski, D. M., and Clark, W. R., Survival, movement, and resource use of the butterfly Parnassius clodius, Ecological Entomology, vol. 29, no. 2, pp. 139-149, 2004.
L. Attigala, Wysocki, W. P., Duvall, M. R., and Clark, L. G., Phylogenetic estimation and morphological evolution of Arundinarieae (Bambusoideae: Poaceae) based on plastome phylogenomic analysis, Molecular Phylogenetics and Evolution, 2016.
L. Attigala, FUENTES, A. L. F. R. E. D. O. F., and Clark, L. G., Chusquea sect. Tenellae (Bambuseae, Bambusoideae, Poaceae), a taxonomic revision of a new section from South America, Phytotaxa, vol. 324, no. 3, pp. 239-265, 2017.
C. Aslan, Beckman, N., Rogers, H., Bronstein, J., Zurell, D., Hartig, F., Shea, K., Pejchar, L., Neubert, M., and Poulsen, J., Employing plant functional groups to advance seed dispersal ecology and conservation, AoB PLANTS, 2019.
D. Ashlock, Adams, D. C., and Doty, D., Morphometric grayscale texture analysis using foot patterns, Evolutionary Computation, 2003. CEC'03. The 2003 Congress on, vol. 3. IEEE, pp. 1575-1581, 2003.
S. Arif, Adams, D. C., and Wicknick, J. A., Bioclimatic modelling, morphology, and behaviour reveal alternative mechanisms regulating the distributions of two parapatric salamander species, Evolutionary Ecology Research, vol. 9, no. 5, pp. 843-854, 2007.
V. J. Apsit, Hamrick, J. L., and Nason, J. D., Estimating pollen flow and effective population sizes of fragmented Enterolobium cyclocarpum populations in Costa Rica. Estimando el flujo de polen y tamaños efectivos de población en poblaciones fragmentadas de Enterolobium cyclocarpum en Costa Rica., International Botanical Congress. XVI, St Louis, MO, US, 1-7 August 1999, 1999-08-01., 1999.
V. J. Apsit, Hamrick, J. L., and Nason, J. D., Breeding population size of a fragmented population of a Costa Rican dry forest tree species, Journal of Heredity, vol. 92, no. 5, pp. 415-420, 2001.
W. L. Applequist, Cronn, R., and Wendel, J. F., Comparative development of fiber in wild and cultivated cotton, Evolution & development, vol. 3, no. 1, pp. 3-17, 2001.
R. A. Y. S. ANDRADE, PIANISSOLA, E. V. A. N. D. R. O. M., VIDAL, K. A. I. O. V. I. N. I. C. I. U. S. D., DA MOTA, A. L. I. N. E. C. O. S. T. A., Clark, L. G., and OLIVEIRA, R. E. Y. J. A. N. E. P., Chusquea parviligulata (Poaceae: Bambusoideae: Bambuseae): a new species of C. subg. Chusquea endemic to the Atlantic rainforest of Bahia, Brazil, Phytotaxa, vol. 405, no. 1, pp. 27-36, 2019.
C. Andorf, Beavis, W. D., Hufford, M., Smith, S., Suza, W. P., Wang, K., Woodhouse, M., Yu, J., and Lübberstedt, T., Technological advances in maize breeding: past, present and future, Theoretical and Applied Genetics, pp. 1-33, 2019.
T. M. Anderson, Griffith, D. M., Grace, J. B., Lind, E. M., Adler, P. B., Biederman, L. A., Blumenthal, D. M., Daleo, P., Firn, J., and Hagenah, N., Herbivory and eutrophication mediate grassland plant nutrient responses across a global climatic gradient., Ecology, 2018.
A
S. Altenbach, Anderson, O., Bigwood, D., Cantinhour, S., Coe, E., Datko, A., Heller, S., Kaleikau, E., McCouch, S., and Kohel, R., USDA plant genome research program, ADVANCES IN AGRONOMY, VOL 55, vol. 55, pp. 113-166, 1995.
C. Alonso, Vuorisalo, T., Wilsey, B., and Honkanen, T., Yponomeuta evonymellus outbreaks in southern Finland: spatial synchrony but different local magnitudes, Annales Zoologici Fennici, pp. 179-188, 2000.
G. R. Almany, De Arruda, M. P., Arthofer, W., Atallah, Z. K., Beissinger, S. R., Berumen, M. L., Bogdanowicz, S. M., Brown, S. D., Bruford, M. W., and Burdine, C., Permanent genetic resources added to molecular ecology resources database 1 May 2009–31 July 2009, Molecular Ecology Resources, vol. 9, no. 6, pp. 1460-1466, 2009.
A. Alejandrino, Puslednik, L., and Serb, J. M., Convergent and parallel evolution in life habit of the scallops (Bivalvia: Pectinidae), BMC Evolutionary Biology, vol. 11, no. 1, p. 164, 2011.
M. L. Ainouche and Wendel, J. F., Genome technologies, polyploidy and evolution, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
M. L. Ainouche and Wendel, J. F., Polyploid speciation and genome evolution: Lessons from recent allopolyploids, in Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life, Springer International Publishing, 2014, pp. 87-113.
E. A. Addis, Gangloff, E. J., Palacios, M. G., Carr, K. E., and Bronikowski, A. M., Merging the “Morphology–Performance–Fitness” Paradigm and Life-History Theory in the Eagle Lake Garter Snake Research Project, Integrative and Comparative Biology, 2017.
D. C. Adams and Beachy, C. K., Historical explanations of phenotypic variation in the plethodontid salamander Gyrinophilus porphyriticus, Herpetologica, pp. 353-364, 2001.
D. C. Adams and Naylor, G. J. P., A Comparison of Methods for Assessing the Structural Similarity of Proteins, in Mathematical Methods for Protein Structure Analysis and Design, Springer Berlin Heidelberg, 2003, pp. 109-115.
D. C. Adams and Otárola-Castillo, E., Package ‘geomorph’: Geometric morphometric analysis of 2d/3d landmark data, R package version, vol. 1, 2012.
D. C. Adams and Rosenberg, M. S., Partial warps, phylogeny, and ontogeny: a comment on Fink and Zelditch (1995), Systematic Biology, pp. 168-173, 1998.
K. L. Adams, Percifield, R., and Wendel, J. F., Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid, Genetics, vol. 168, no. 4, pp. 2217-2226, 2004.
D. C. Adams and Collyer, M. L., A general framework for the analysis of phenotypic trajectories in evolutionary studies, Evolution, vol. 63, no. 5, pp. 1143-1154, 2009.
K. L. Adams and Wendel, J. F., Dynamics of duplicated gene expression in Polyploid Cotton, Polyploid and hybrid genomics, pp. 187-194, 2013.
D. C. Adams, Ecological character displacement in Plethodon and methods for shape analysis of articulated structures. 1999.
D. C. Adams, Review of: Morphology, Shape and Phylogeny, Biometrics, vol. 58, pp. 694-695, 2002.
D. C. Adams, Gurevitch, J., and Rosenberg, M. S., Resampling tests for meta-analysis of ecological data, Ecology, vol. 78, no. 4, pp. 1277-1283, 1997.
D. C. Adams and Collyer, M. L., Permutation tests for phylogenetic comparative analyses of high‐dimensional shape data: What you shuffle matters, Evolution, vol. 69, no. 3, pp. 823-829, 2015.
D. C. Adams, Glynne, E., and Kaliontzopoulou, A., Interspecific allometry for sexual shape dimorphism: Macroevolution of multivariate sexual phenotypes with application to Rensch's Rule, Evolution, 2020.
D. C. Adams and Collyer, M. L., Analysis of character divergence along environmental gradients and other covariates, Evolution, vol. 61, no. 3, pp. 510-515, 2007.
K. L. Adams and Wendel, J. F., Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids, Genetics, vol. 171, no. 4, pp. 2139-2142, 2005.
D. C. Adams and Nistri, A., Ontogenetic convergence and evolution of foot morphology in European cave salamanders (Family: Plethodontidae), BMC Evolutionary Biology, vol. 10, no. 1, p. 216, 2010.
D. C. Adams, Quantitative genetics and evolution of head shape in Plethodon salamanders, Evolutionary Biology, vol. 38, no. 3, pp. 278-286, 2011.
D. C. Adams, Evaluating modularity in morphometric data: challenges with the RV coefficient and a new test measure, Methods in Ecology and Evolution, 2015.
D. C. Adams, Quantifying and comparing phylogenetic evolutionary rates for shape and other high-dimensional phenotypic data, Systematic biology, p. syt105, 2013.
D. C. Adams and Collyer, M. L., Phylogenetic anova: group‐clade aggregation, biological challenges, and a refined permutation procedure, Evolution, 2018.
D. C. Adams, Methods for shape analysis of landmark data from articulated structures, Evolutionary Ecology Research, vol. 1, no. 8, pp. 959-970, 1999.
K. L. Adams and Wendel, J. F., Polyploidy and genome evolution in plants, Current opinion in plant biology, vol. 8, no. 2, pp. 135-141, 2005.
D. C. Adams, Divergence of trophic morphology and resource use among populations of Plethodon cinereus and P. hoffmani in Pennsylvania, in The biology of Plethodontid salamanders, Springer US, 2000, pp. 383-394.
K. L. Adams, Flagel, L., and Wendel, J. F., Responses of the cotton genome to polyploidy, in Genetics and Genomics of Cotton, Springer US, 2009, pp. 419-429.
D. C. Adams, Di Bitetti, M. S., Janson, C. H., Slobodkin, L. B., and Valenzuela, N., An" audience effect" for ecological terminology: use and misuse of jargon, Oikos, pp. 632-636, 1997.
D. C. Adams, Review of: Sampling and Statistical Methods for Behavioral Ecologists, Quarterly Review of Biology, vol. 75, p. 76, 2000.
D. C. Adams and Collyer, M. L., Multivariate Phylogenetic Comparative Methods: Evaluations, Comparisons, and Recommendations, Systematic Biology, 2017.

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