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J. Alves Audino, Serb, J. Marie, and Marian, J. Eduardo Am, Hard to get, easy to lose: Evolution of mantle photoreceptor organs in bivalves (Bivalvia, Pteriomorphia), Evolution, 2020.
J. A. Audino, Serb, J. M., and Marian, J. Eduardo A. R., Phylogeny and anatomy of marine mussels (Bivalvia: Mytilidae) reveal convergent evolution of siphon traits, Zoological Journal of the Linnean Society, 2020.
J. A. Audino, Serb, J. M., and Marian, J. Eduardo A. R., Untangling the diversity and evolution of tentacles in scallops, oysters, and their relatives (Bivalvia: Pteriomorphia), Organisms Diversity & Evolution, pp. 1-16, 2021.
J. N. Auckland, Debinski, D. M., and Clark, W. R., Survival, movement, and resource use of the butterfly Parnassius clodius, Ecological Entomology, vol. 29, no. 2, pp. 139-149, 2004.
L. Attigala, FUENTES, A. L. F. R. E. D. O. F., and Clark, L. G., Chusquea sect. Tenellae (Bambuseae, Bambusoideae, Poaceae), a taxonomic revision of a new section from South America, Phytotaxa, vol. 324, no. 3, pp. 239-265, 2017.
L. Attigala, Wysocki, W. P., Duvall, M. R., and Clark, L. G., Phylogenetic estimation and morphological evolution of Arundinarieae (Bambusoideae: Poaceae) based on plastome phylogenomic analysis, Molecular Phylogenetics and Evolution, 2016.
C. Aslan, Beckman, N., Rogers, H., Bronstein, J., Zurell, D., Hartig, F., Shea, K., Pejchar, L., Neubert, M., and Poulsen, J., Employing plant functional groups to advance seed dispersal ecology and conservation, AoB PLANTS, 2019.
D. Ashlock, Adams, D. C., and Doty, D., Morphometric grayscale texture analysis using foot patterns, Evolutionary Computation, 2003. CEC'03. The 2003 Congress on, vol. 3. IEEE, pp. 1575-1581, 2003.
S. Arif, Adams, D. C., and Wicknick, J. A., Bioclimatic modelling, morphology, and behaviour reveal alternative mechanisms regulating the distributions of two parapatric salamander species, Evolutionary Ecology Research, vol. 9, no. 5, pp. 843-854, 2007.
V. J. Apsit, Hamrick, J. L., and Nason, J. D., Estimating pollen flow and effective population sizes of fragmented Enterolobium cyclocarpum populations in Costa Rica. Estimando el flujo de polen y tamaños efectivos de población en poblaciones fragmentadas de Enterolobium cyclocarpum en Costa Rica., International Botanical Congress. XVI, St Louis, MO, US, 1-7 August 1999, 1999-08-01., 1999.
V. J. Apsit, Hamrick, J. L., and Nason, J. D., Breeding population size of a fragmented population of a Costa Rican dry forest tree species, Journal of Heredity, vol. 92, no. 5, pp. 415-420, 2001.
W. L. Applequist, Cronn, R., and Wendel, J. F., Comparative development of fiber in wild and cultivated cotton, Evolution & development, vol. 3, no. 1, pp. 3-17, 2001.
R. A. Y. S. ANDRADE, PIANISSOLA, E. V. A. N. D. R. O. M., VIDAL, K. A. I. O. V. I. N. I. C. I. U. S. D., DA MOTA, A. L. I. N. E. C. O. S. T. A., Clark, L. G., and OLIVEIRA, R. E. Y. J. A. N. E. P., Chusquea parviligulata (Poaceae: Bambusoideae: Bambuseae): a new species of C. subg. Chusquea endemic to the Atlantic rainforest of Bahia, Brazil, Phytotaxa, vol. 405, no. 1, pp. 27-36, 2019.
C. Andorf, Beavis, W. D., Hufford, M., Smith, S., Suza, W. P., Wang, K., Woodhouse, M., Yu, J., and Lübberstedt, T., Technological advances in maize breeding: past, present and future, Theoretical and Applied Genetics, pp. 1-33, 2019.
T. M. Anderson, Griffith, D. M., Grace, J. B., Lind, E. M., Adler, P. B., Biederman, L. A., Blumenthal, D. M., Daleo, P., Firn, J., and Hagenah, N., Herbivory and eutrophication mediate grassland plant nutrient responses across a global climatic gradient., Ecology, 2018.
A
S. Altenbach, Anderson, O., Bigwood, D., Cantinhour, S., Coe, E., Datko, A., Heller, S., Kaleikau, E., McCouch, S., and Kohel, R., USDA plant genome research program, ADVANCES IN AGRONOMY, VOL 55, vol. 55, pp. 113-166, 1995.
C. Alonso, Vuorisalo, T., Wilsey, B., and Honkanen, T., Yponomeuta evonymellus outbreaks in southern Finland: spatial synchrony but different local magnitudes, Annales Zoologici Fennici, pp. 179-188, 2000.
G. R. Almany, De Arruda, M. P., Arthofer, W., Atallah, Z. K., Beissinger, S. R., Berumen, M. L., Bogdanowicz, S. M., Brown, S. D., Bruford, M. W., and Burdine, C., Permanent genetic resources added to molecular ecology resources database 1 May 2009–31 July 2009, Molecular Ecology Resources, vol. 9, no. 6, pp. 1460-1466, 2009.
A. Alejandrino, Puslednik, L., and Serb, J. M., Convergent and parallel evolution in life habit of the scallops (Bivalvia: Pectinidae), BMC Evolutionary Biology, vol. 11, no. 1, p. 164, 2011.
M. Al-Traboulsi, Wilsey, B., and Potvin, C., The effect of long-term CO, Folia Oecologica, vol. 48, no. 2, 2021.
M. L. Ainouche and Wendel, J. F., Genome technologies, polyploidy and evolution, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
M. L. Ainouche and Wendel, J. F., Polyploid speciation and genome evolution: Lessons from recent allopolyploids, in Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life, Springer International Publishing, 2014, pp. 87-113.
E. A. Addis, Gangloff, E. J., Palacios, M. G., Carr, K. E., and Bronikowski, A. M., Merging the “Morphology–Performance–Fitness” Paradigm and Life-History Theory in the Eagle Lake Garter Snake Research Project, Integrative and Comparative Biology, 2017.
D. C. Adams and Felice, R. N., Assessing trait covariation and morphological integration on phylogenies using evolutionary covariance matrices, PloS one, vol. 9, no. 4, p. e94335, 2014.
D. C. Adams and Church, J. O., Amphibians do not follow Bergmann's rule, Evolution, vol. 62, no. 2, pp. 413-420, 2008.
K. L. Adams and Wendel, J. F., Novel patterns of gene expression in polyploid plants, TRENDS in Genetics, vol. 21, no. 10, pp. 539-543, 2005.
D. C. Adams, Parallel evolution of character displacement driven by competitive selection in terrestrial salamanders, BMC Evolutionary Biology, vol. 10, no. 1, p. 72, 2010.
D. C. Adams and Naylor, G. J. P., A new method for evaluating the structural similarity of proteins using geometric morphometrics, Currents in computational molecular biology). Universal Academy Press, Tokyo, 2000.
D. C. Adams, Comparing evolutionary rates for different phenotypic traits on a phylogeny using likelihood, Systematic biology, p. sys083, 2012.
D. C. Adams and Anthony, C. D., Using randomization techniques to analyse behavioural data, Animal Behaviour, vol. 51, no. 4, pp. 733-738, 1996.
D. C. Adams, A Possible Case of Character Displacement, The Biology of Plethodontid Salamanders, p. 383, 2000.
D. C. Adams, West, M. E., and Collyer, M. L., Location‐specific sympatric morphological divergence as a possible response to species interactions in West Virginia Plethodon salamander communities, Journal of Animal Ecology, vol. 76, no. 2, pp. 289-295, 2007.
D. C. Adams and Beachy, C. K., Historical explanations of phenotypic variation in the plethodontid salamander Gyrinophilus porphyriticus, Herpetologica, pp. 353-364, 2001.
D. C. Adams and Naylor, G. J. P., A Comparison of Methods for Assessing the Structural Similarity of Proteins, in Mathematical Methods for Protein Structure Analysis and Design, Springer Berlin Heidelberg, 2003, pp. 109-115.
D. C. Adams and Otárola-Castillo, E., Package ‘geomorph’: Geometric morphometric analysis of 2d/3d landmark data, R package version, vol. 1, 2012.
D. C. Adams and Rosenberg, M. S., Partial warps, phylogeny, and ontogeny: a comment on Fink and Zelditch (1995), Systematic Biology, pp. 168-173, 1998.
K. L. Adams, Percifield, R., and Wendel, J. F., Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid, Genetics, vol. 168, no. 4, pp. 2217-2226, 2004.
D. C. Adams and Collyer, M. L., A general framework for the analysis of phenotypic trajectories in evolutionary studies, Evolution, vol. 63, no. 5, pp. 1143-1154, 2009.
K. L. Adams and Wendel, J. F., Dynamics of duplicated gene expression in Polyploid Cotton, Polyploid and hybrid genomics, pp. 187-194, 2013.
D. C. Adams, Ecological character displacement in Plethodon and methods for shape analysis of articulated structures. 1999.
D. C. Adams, Review of: Morphology, Shape and Phylogeny, Biometrics, vol. 58, pp. 694-695, 2002.
D. C. Adams, Gurevitch, J., and Rosenberg, M. S., Resampling tests for meta-analysis of ecological data, Ecology, vol. 78, no. 4, pp. 1277-1283, 1997.
D. C. Adams and Collyer, M. L., Permutation tests for phylogenetic comparative analyses of high‐dimensional shape data: What you shuffle matters, Evolution, vol. 69, no. 3, pp. 823-829, 2015.
D. C. Adams, Glynne, E., and Kaliontzopoulou, A., Interspecific allometry for sexual shape dimorphism: Macroevolution of multivariate sexual phenotypes with application to Rensch's Rule, Evolution, 2020.
D. C. Adams and Collyer, M. L., Analysis of character divergence along environmental gradients and other covariates, Evolution, vol. 61, no. 3, pp. 510-515, 2007.
K. L. Adams and Wendel, J. F., Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids, Genetics, vol. 171, no. 4, pp. 2139-2142, 2005.
D. C. Adams and Nistri, A., Ontogenetic convergence and evolution of foot morphology in European cave salamanders (Family: Plethodontidae), BMC Evolutionary Biology, vol. 10, no. 1, p. 216, 2010.

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