Publications

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Journal Article
J. M. Serb, Orr, M. C., and M Greenlee, H. West, Using evolutionary conserved modules in gene networks as a strategy to leverage high throughput gene expression queries, PloS one, vol. 5, no. 10.1371, 2010.
J. M. Serb, Porath-Krause, A. J., and Pairett, A. N., Uncovering a gene duplication of the photoreceptive protein, opsin, in scallops (bivalvia: Pectinidae), Integrative and comparative biology, p. ict063, 2013.
J. M. Serb, Toward Developing Models to Study the Disease, Ecology, and Evolution of the Eye in Mollusca*, American Malacological Bulletin, vol. 26, no. 1/2, pp. 3-18, 2008.
A. J. Porath-Krause, Pairett, A. N., Faggionato, D., Birla, B. S., Sankar, K., and Serb, J. M., Structural differences and differential expression among rhabdomeric opsins reveal functional change after gene duplication in the bay scallop, Argopecten irradians (Pectinidae), BMC Evolutionary Biology, vol. 16, no. 1, p. 250, 2016.
A. M. Sparkman, Schwartz, T. S., Madden, J. A., Boyken, S. E., Ford, N. B., Serb, J. M., and Bronikowski, A. M., Rates of molecular evolution vary in vertebrates for insulin-like growth factor-1 (IGF-1), a pleiotropic locus that regulates life history traits, General and comparative endocrinology, vol. 178, no. 1, pp. 164-173, 2012.
D. C. Campbell, Serb, J. M., Buhay, J. E., Roe, K. J., Minton, R. L., and Lydeard, C., Phylogeny of North American amblemines (Bivalvia, Unionoida): prodigious polyphyly proves pervasive across genera, Invertebrate Biology, vol. 124, no. 2, pp. 131-164, 2005.
J. M. Serb, Sherratt, E., Alejandrino, A., and Adams, D. C., Phylogenetic convergence and multiple shell shape optima for gliding scallops (Bivalvia: Pectinidae), Journal of Evolutionary Biology, 2017.
C. A. Phillips, Uzzell, T., Spolsky, C. M., Serb, J. M., Szafoni, R. E., and Pollowy, T. R., Persistent high levels of tetraploidy in salamanders of the Ambystoma jeffersonianum complex, Journal of Herpetology, pp. 530-535, 1997.
D. C. Plachetzki, Serb, J. M., and Oakley, T. H., New insights into the evolutionary history of photoreceptor cells, Trends in ecology & evolution, vol. 20, no. 9, pp. 465-467, 2005.
X. Zhang, Serb, J. M., and M Greenlee, H. West, Mouse retinal development: a dark horse model for systems biology research, Bioinformatics and biology insights, vol. 5, p. 99, 2011.
J. M. Serb, Alejandrino, A., OTÁROLA‐CASTILLO, E. R. I. K., and Adams, D. C., Morphological convergence of shell shape in distantly related scallop species (Mollusca: Pectinidae), Zoological Journal of the Linnean Society, vol. 163, no. 2, pp. 571-584, 2011.
G. Mynhardt, Alejandrino, A., Puslednik, L., Corrales, J., and Serb, J. M., Molluscan Studies, Journal of Molluscan Studies, vol. 80, pp. 400-411, 2014.
J. M. Serb, Buhay, J. E., and Lydeard, C., Molecular systematics of the North American freshwater bivalve genus Quadrula (Unionidae: Ambleminae) based on mitochondrial ND1 sequences, Molecular phylogenetics and evolution, vol. 28, no. 1, pp. 1-11, 2003.
J. M. Serb, Phillips, C. A., and Iverson, J. B., Molecular phylogeny and biogeography of Kinosternon flavescens based on complete mitochondrial control region sequences, Molecular Phylogenetics and Evolution, vol. 18, no. 1, pp. 149-162, 2001.
L. Puslednik and Serb, J. M., Molecular phylogenetics of the Pectinidae (Mollusca: Bivalvia) and effect of increased taxon sampling and outgroup selection on tree topology, Molecular Phylogenetics and Evolution, vol. 48, no. 3, pp. 1178-1188, 2008.
A. C. Kraemer, Serb, J. M., and Adams, D. C., Model toxin level does not directly influence the evolution of mimicry in the salamander Plethodon cinereus, Evolutionary Ecology, pp. 1-13, 2015.
A. C. Kraemer, Serb, J. M., and Adams, D. C., Model toxin level does not directly influence the evolution of mimicry in the salamander Plethodon cinereus, Evolutionary Ecology, pp. 1-13, 2015.
A. H. Hemmingsen, Roe, K. J., and Serb, J. M., Isolation and characterization of nine microsatellite markers for the endangered winged-mapleleaf mussel, Quadrula fragosa (Bivalvia, Unionidae), Mol Ecol Resour, vol. 9, pp. 1460-1466, 2009.
J. M. Serb, Introduction to the Symposium “Molluscan Models: Advancing Our Understanding of the Eye”*, American Malacological Bulletin, vol. 26, no. 1/2, pp. 1-2, 2008.
D. C. Campbell, Johnson, P. D., Williams, J. D., Rindsberg, A. K., Serb, J. M., Small, K. K., and Lydeard, C., Identification of ‘extinct’freshwater mussel species using DNA barcoding, Molecular Ecology Resources, vol. 8, no. 4, pp. 711-724, 2008.
J. M. Serb and Oakley, T. H., Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology, Bioessays, vol. 27, no. 11, pp. 1158-1166, 2005.
A. S. Rivera, M Pankey, S., Plachetzki, D. C., Villacorta, C., Syme, A. E., Serb, J. M., Omilian, A. R., and Oakley, T. H., Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach, BMC evolutionary biology, vol. 10, no. 1, p. 123, 2010.
X. Zhang, M Greenlee, H. West, and Serb, J. M., EnRICH: extraction and ranking using integration and criteria heuristics, BMC systems biology, vol. 7, no. 1, p. 4, 2013.
J. M. Serb, Discovery of genetically distinct sympatric lineages in the freshwater mussel Cyprogenia aberti (Bivalvia: Unionidae), Journal of Molluscan Studies, vol. 72, no. 4, pp. 425-434, 2006.
A. N. Pairett and Serb, J. M., De novo assembly and characterization of two transcriptomes reveal multiple light-mediated functions in the scallop eye (Bivalvia: Pectinidae), 2013.
A. Alejandrino, Puslednik, L., and Serb, J. M., Convergent and parallel evolution in life habit of the scallops (Bivalvia: Pectinidae), BMC Evolutionary Biology, vol. 11, no. 1, p. 164, 2011.
J. E. Buhay, Serb, J. M., C Dean, R. E. N. É. E., Parham, Q. S. H. E. Q. U. I. L. L. A., and Lydeard, C., Conservation genetics of two endangered unionid bivalve species, Epioblasma florentina walkeri and E. capsaeformis (Unionidae: Lampsilini), Journal of Molluscan Studies, vol. 68, no. 4, pp. 385-392, 2002.
J. M. Serb and M Barnhart, C., Congruence and Conflict Between Molecular and Reproductive Characters When Assessing Biological Diversity in the Western Fanshell Cyprogenia aberti (Bivalvia, Unionidae) 1, Annals of the Missouri Botanical Garden, vol. 95, no. 2, pp. 248-261, 2008.
J. M. Serb and Lydeard, C., Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): an examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca), Molecular Biology and Evolution, vol. 20, no. 11, pp. 1854-1866, 2003.
J. M. Serb and Eernisse, D. J., Charting evolution’s trajectory: using molluscan eye diversity to understand parallel and convergent evolution, Evolution: Education and Outreach, vol. 1, no. 4, pp. 439-447, 2008.
A. C. Kraemer, Serb, J. M., and Adams, D. C., Batesian mimics influence the evolution of conspicuousness in an aposematic salamander, Journal of evolutionary biology, 2015.
P. G. HARNIK, Serb, J. M., Adams, D. C., RIEMANN, R., and SMITH, T., ARE CHANGING ENVIRONMENTS REFLECTED IN THE MORPHOLOGICAL DISPARITY OF FOSSIL AND RECENT SCALLOPS FROM THE TROPICAL AMERICAS?, 2014 GSA Annual Meeting in Vancouver, British Columbia, 2014.
Conference Proceedings
J. M. Serb and Puslednik, L., Phylogenetic relationships of the pectinidae and the evolution of sexual reproductive modes: How important is dispersal life history?, JOURNAL OF SHELLFISH RESEARCH, vol. 26, no. 4. NATL SHELLFISHERIES ASSOC C/O DR. SANDRA E. SHUMWAY, UNIV CONNECTICUT, 1080 SHENNECOSSETT RD, GROTON, CT 06340 USA, pp. 1344-1345, 2007.
A. N. Pairett and Serb, J. M., Comparative transcriptomics: A study using the mirror eye of the scallop, Argopecten irradians, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 51. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E234-E234, 2011.