Publications

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Book Chapter
D. C. Adams and Naylor, G. J. P., A Comparison of Methods for Assessing the Structural Similarity of Proteins, in Mathematical Methods for Protein Structure Analysis and Design, Springer Berlin Heidelberg, 2003, pp. 109-115.
D. C. Adams, Divergence of trophic morphology and resource use among populations of Plethodon cinereus and P. hoffmani in Pennsylvania, in The biology of Plethodontid salamanders, Springer US, 2000, pp. 383-394.
J. F. Wendel, Brubaker, C., Álvarez, I., Cronn, R., and Stewart, J. McD., Evolution and natural history of the cotton genus, in Genetics and genomics of cotton, Springer US, 2009, pp. 3-22.
J. F. Wendel, Flagel, L. E., and Adams, K. L., Jeans, genes, and genomes: cotton as a model for studying polyploidy, in Polyploidy and genome evolution, Springer Berlin Heidelberg, 2012, pp. 181-207.
M. L. Ainouche and Wendel, J. F., Polyploid speciation and genome evolution: Lessons from recent allopolyploids, in Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life, Springer International Publishing, 2014, pp. 87-113.
K. L. Adams, Flagel, L., and Wendel, J. F., Responses of the cotton genome to polyploidy, in Genetics and Genomics of Cotton, Springer US, 2009, pp. 419-429.
J. Bohórquez-Herrera, Aurioles-Gamboa, D., Hernandez-Camacho, C., and Adams, D. C., Variability in the Skull Morphology of Adult Male California Sea Lions and Galapagos Sea Lions, in Tropical pinnipeds: Bio-ecology, threats and conservation, CRC Press, 2017, pp. 22-49.
J. Bohórquez-Herrera, Aurioles-Gamboa, D., Hernandez-Camacho, C., and Adams, D. C., Variability in the Skull Morphology of Adult Male California Sea Lions and Galapagos Sea Lions, in Tropical pinnipeds: Bio-ecology, threats and conservation, CRC Press, 2017, pp. 22-49.
Conference Proceedings
A. C. Kraemer, Serb, J. M., and Adams, D. C., Coevolution of Coloration and Conspicuousness in a Batesian Mimic, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 54. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E114-E114, 2014.
M. L. Ainouche and Wendel, J. F., Genome technologies, polyploidy and evolution, Ecole thématique CNRS “High-throughput molecular biology methods in the environmental sciences”. 2005.
E. Sherratt, Adams, D. C., and Serb, J. M., Macroevolution, phylomorphospace and directional evolution in recessing scallops, INTEGRATIVE AND COMPARATIVE BIOLOGY, vol. 55. OXFORD UNIV PRESS INC JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA, pp. E166-E166, 2015.
D. Ashlock, Adams, D. C., and Doty, D., Morphometric grayscale texture analysis using foot patterns, Evolutionary Computation, 2003. CEC'03. The 2003 Congress on, vol. 3. IEEE, pp. 1575-1581, 2003.
D. Ashlock, Adams, D. C., and Doty, D., Morphometric grayscale texture analysis using foot patterns, Evolutionary Computation, 2003. CEC'03. The 2003 Congress on, vol. 3. IEEE, pp. 1575-1581, 2003.
H. Twyman, Valenzuela, N., Literman, R., Andersson, S., and Mundy, N. I., Seeing red to being red: conserved genetic mechanism for red cone oil droplets and co-option for red coloration in birds and turtles, Proc. R. Soc. B, vol. 283, no. 1836. The Royal Society, p. 20161208, 2016.
M. M. Cerney and Adams, D. C., Sequestering Size: The Role of Allometry and Gender in Digital Human Modeling, Proceedings of the SAE Digital Human Modeling Conference. pp. 2004-04DHM-38, 2004.
Journal Article
J. Rong, Abbey, C., Bowers, J. E., Brubaker, C. L., Chang, C., Chee, P. W., Delmonte, T. A., Ding, X., Garza, J. J., and Marler, B. S., A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium), Genetics, vol. 166, no. 1, pp. 389-417, 2004.
C. I. Castillo-Davis, Miller, D. J., Ball, E. E., Technau, U., Adams, K. L., Wendel, J. F., Neeman, Y., Dahary, D., Levanon, E. Y., and Sorek, R., 553 Multievidence microarray mining, Genetics, vol. 21, no. 10, pp. 533-582, 2005.
A. Marck, Berthelot, G., Foulonneau, V., Marc, A., Antero-Jacquemin, J., Noirez, P., Bronikowski, A. M., Morgan, T. J., Garland, T., and Carter, P. A., Age-Related Changes in Locomotor Performance Reveal a Similar Pattern for Caenorhabditis elegans, Mus domesticus, Canis familiaris, Equus caballus, and Homo sapiens, The Journals of Gerontology Series A: Biological Sciences and Medical Sciences, p. glw136, 2016.
K. L. Adams and Wendel, J. F., Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids, Genetics, vol. 171, no. 4, pp. 2139-2142, 2005.
J. F. Jackson, Adams, D. C., and Jackson, U. B., Allometry of constitutive defense: a model and a comparative test with tree bark and fire regime, The American Naturalist, vol. 153, no. 6, pp. 614-632, 1999.
D. C. Adams and Church, J. O., Amphibians do not follow Bergmann's rule, Evolution, vol. 62, no. 2, pp. 413-420, 2008.
D. C. Adams and Collyer, M. L., Analysis of character divergence along environmental gradients and other covariates, Evolution, vol. 61, no. 3, pp. 510-515, 2007.
M. L. Collyer and Adams, D. C., Analysis of two-state multivariate phenotypic change in ecological studies, Ecology, vol. 88, no. 3, pp. 683-692, 2007.
P. G. HARNIK, Serb, J. M., Adams, D. C., RIEMANN, R., and SMITH, T., ARE CHANGING ENVIRONMENTS REFLECTED IN THE MORPHOLOGICAL DISPARITY OF FOSSIL AND RECENT SCALLOPS FROM THE TROPICAL AMERICAS?, 2014 GSA Annual Meeting in Vancouver, British Columbia, 2014.
D. C. Adams, Berns, C. M., Kozak, K. H., and Wiens, J. J., Are rates of species diversification correlated with rates of morphological evolution?, Proceedings of the Royal Society of London B: Biological Sciences, p. rspb. 2009.0543, 2009.
G. J. P. Naylor and Adams, D. C., Are the fossil data really at odds with the molecular data? Morphological evidence for Cetartiodactyla phylogeny reexamined, Systematic Biology, pp. 444-453, 2001.
G. J. P. Naylor and Adams, D. C., Are the fossil data really at odds with the molecular data?(vol 50, pg 444, 2001), SYSTEMATIC BIOLOGY, vol. 50, no. 6, pp. 1026-1026, 2001.
D. C. Adams and Felice, R. N., Assessing trait covariation and morphological integration on phylogenies using evolutionary covariance matrices, PloS one, vol. 9, no. 4, p. e94335, 2014.
D. C. Adams, Di Bitetti, M. S., Janson, C. H., Slobodkin, L. B., and Valenzuela, N., An" audience effect" for ecological terminology: use and misuse of jargon, Oikos, pp. 632-636, 1997.
A. C. Kraemer, Serb, J. M., and Adams, D. C., Batesian mimics influence the evolution of conspicuousness in an aposematic salamander, Journal of evolutionary biology, 2015.
C. M. Berns and Adams, D. C., Becoming different but staying alike: patterns of sexual size and shape dimorphism in bills of hummingbirds, Evolutionary Biology, vol. 40, no. 2, pp. 246-260, 2013.
A. E. Bennett, Preedy, K., Golubski, A., Umbanhowar, J., Borrett, S. R., Byrne, L., Apostol, K., Bever, J. D., Biederman, L., and Classen, A. T., Beyond the black box: promoting mathematical collaborations for elucidating interactions in soil ecology, Ecosphere, vol. 10, no. 7, p. e02799, 2019.
C. M. Berns and Adams, D. C., Bill shape and sexual shape dimorphism between two species of temperate hummingbirds: Black-Chinned hummingbird (Archilochus alexandri) and Ruby-Throated hummingbird (A. colubris), The Auk, vol. 127, no. 3, pp. 626-635, 2010.
S. Arif, Adams, D. C., and Wicknick, J. A., Bioclimatic modelling, morphology, and behaviour reveal alternative mechanisms regulating the distributions of two parapatric salamander species, Evolutionary Ecology Research, vol. 9, no. 5, pp. 843-854, 2007.
S. Arif, Adams, D. C., and Wicknick, J. A., Bioclimatic modelling, morphology, and behaviour reveal alternative mechanisms regulating the distributions of two parapatric salamander species, Evolutionary Ecology Research, vol. 9, no. 5, pp. 843-854, 2007.
P. M. Vitousek, Aplet, G. H., Raich, J. W., and Lockwood, J. P., Biological perspectives on Mauna Loa Volcano: a model system for ecological research, Mauna Loa revealed: structure, composition, history, and hazards, pp. 117-126, 1995.
D. D. Kassam, Adams, D. C., Ambali, A. J. D., and Yamaoka, K., Body shape variation in relation to resource partitioning within cichlid trophic guilds coexisting along the rocky shore of Lake Malawi, Animal Biology, vol. 53, no. 1, pp. 59-70, 2003.
D. D. Kassam, Adams, D. C., Ambali, A. J. D., and Yamaoka, K., Body shape variation in relation to resource partitioning within cichlid trophic guilds coexisting along the rocky shore of Lake Malawi, Animal Biology, vol. 53, no. 1, pp. 59-70, 2003.
V. J. Apsit, Hamrick, J. L., and Nason, J. D., Breeding population size of a fragmented population of a Costa Rican dry forest tree species, Journal of Heredity, vol. 92, no. 5, pp. 415-420, 2001.
R. M. Maher, Asbjornsen, H., Kolka, R. K., Cambardella, C. A., and Raich, J. W., Changes in soil respiration across a chronosequence of tallgrass prairie reconstructions, Agriculture, ecosystems & environment, vol. 139, no. 4, pp. 749-753, 2010.
R. G. Jaeger, Prosen, E. D., Adams, D. C., and Montgomery, W. L., Character Displacement and Aggression in Two Species ofTerrestrial Salamanders, Copeia, vol. 2002, no. 2, pp. 391-401, 2002.
D. C. Adams, Character displacement via aggressive interference in Appalachian salamanders, Ecology, vol. 85, no. 10, pp. 2664-2670, 2004.
N. Valenzuela and Adams, D. C., Chromosome number and sex determination coevolve in turtles, Evolution, vol. 65, no. 6, pp. 1808-1813, 2011.
R. A. Y. S. ANDRADE, PIANISSOLA, E. V. A. N. D. R. O. M., VIDAL, K. A. I. O. V. I. N. I. C. I. U. S. D., DA MOTA, A. L. I. N. E. C. O. S. T. A., Clark, L. G., and OLIVEIRA, R. E. Y. J. A. N. E. P., Chusquea parviligulata (Poaceae: Bambusoideae: Bambuseae): a new species of C. subg. Chusquea endemic to the Atlantic rainforest of Bahia, Brazil, Phytotaxa, vol. 405, no. 1, pp. 27-36, 2019.
L. Attigala, FUENTES, A. L. F. R. E. D. O. F., and Clark, L. G., Chusquea sect. Tenellae (Bambuseae, Bambusoideae, Poaceae), a taxonomic revision of a new section from South America, Phytotaxa, vol. 324, no. 3, pp. 239-265, 2017.
W. L. Applequist, Cronn, R., and Wendel, J. F., Comparative development of fiber in wild and cultivated cotton, Evolution & development, vol. 3, no. 1, pp. 3-17, 2001.
D. C. Adams, Comparing evolutionary rates for different phenotypic traits on a phylogeny using likelihood, Systematic biology, p. sys083, 2012.
D. C. Adams and Collyer, M. L., On the comparison of the strength of morphological integration across morphometric datasets, Evolution, 2016.

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